mRNA_S-ischiensis_contig85.20169.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20169.1
Unique NamemRNA_S-ischiensis_contig85.20169.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A6H5K5X9_9PHAE (Uroporphyrinogen decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5X9_9PHAE)

HSP 1 Score: 458 bits (1178), Expect = 3.650e-158
Identity = 219/265 (82.64%), Postives = 244/265 (92.08%), Query Frame = 3
Query:  165 CSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQ 959
            C     CMS++D+HDILLRVA+GE+A+R+PVWLMRQAGRYM AFRK+SD YPFRHRSETPEIAIELSLQPW+ FGVDGVIMFSDILTPLP+MGV+FDVVKG GPVI NPIRT +DVEAVR ++DIDGKLPFVGETL+ALRSETEGK+TL+GFVGAPWTL AY+ EGGSSKHALHTK MMM +PALFHSLM K+A S+GDYACYQ E GAQVIQVFESWAHQM+PSQFETFAKPYAD+AMSILK +HP+VPVIYFANGGSSYLESQ
Sbjct:   68 CGRSRPCMSSSDEHDILLRVAKGEKAERAPVWLMRQAGRYMSAFRKYSDSYPFRHRSETPEIAIELSLQPWRTFGVDGVIMFSDILTPLPSMGVDFDVVKGTGPVISNPIRTKADVEAVRVMEDIDGKLPFVGETLKALRSETEGKSTLIGFVGAPWTLAAYSIEGGSSKHALHTKKMMMEDPALFHSLMTKLANSIGDYACYQVENGAQVIQVFESWAHQMIPSQFETFAKPYADLAMSILKQRHPDVPVIYFANGGSSYLESQ 332          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2UYW2_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYW2_9STRA)

HSP 1 Score: 390 bits (1003), Expect = 4.300e-132
Identity = 185/266 (69.55%), Postives = 223/266 (83.83%), Query Frame = 3
Query:  177 PMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            P  ++ A DHDILLRVARGE A+R+PVWLMRQAGRYMKAFR++SD YPFR RSETPEIA+ELSLQPW+AFGVDGVIMFSDILTPLP++GVEFDV+KG GPVI NP+RTA+D+E + PL D   KL FVGETL+AL+ E EGK TL+GF+GAPWT+ AY+ EGGSSK+ + TK MMM +P LF  LM  +A ++ DYACYQ E GAQV+Q+FESWAHQ+ P+ F TFAKPYAD+ M ++K ++P+VPVIYFANGGSSYLE Q  M+A
Sbjct:   47 PASVNIATDHDILLRVARGEDAERTPVWLMRQAGRYMKAFREYSDKYPFRVRSETPEIAVELSLQPWKAFGVDGVIMFSDILTPLPSLGVEFDVIKGHGPVISNPLRTAADIEQMTPLGDPSDKLGFVGETLQALKKEVEGKTTLVGFIGAPWTMAAYSCEGGSSKNCMITKKMMMEQPQLFDRLMNHLAVNLADYACYQVENGAQVLQIFESWAHQLSPAFFSTFAKPYADLTMKLIKERYPDVPVIYFANGGSSYLERQSDMNA 312          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A836CKK7_9STRA (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKK7_9STRA)

HSP 1 Score: 373 bits (958), Expect = 3.250e-125
Identity = 191/280 (68.21%), Postives = 221/280 (78.93%), Query Frame = 3
Query:  147 GRTTRTCSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQ---DIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGS---SKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGM 968
            G T R  +   M M+A  DHDILLRVARGEQA R PVWLMRQAGRYMK FR +SD Y FRHRSETPEIAIELSLQPW+AFGVDGVIMFSDILTP PAMGVEFD+VKGKGP   +P+RTA+D+ A++ L    DID  LPFVG+TLRALR ETEG ATLLGFVGAPWTL AYA EG +   +  A H + MM  +P LF   M K+A SVG+YACYQAEQGAQVIQ FESWAH+M  + FE + +PYA+M+M++++ +HP VPVIYFANGGS+YLES  GM
Sbjct:   34 GATHRHAAARGMTMAANADHDILLRVARGEQAHRPPVWLMRQAGRYMKDFRAYSDKYAFRHRSETPEIAIELSLQPWRAFGVDGVIMFSDILTPFPAMGVEFDIVKGKGPAFASPVRTAADIAAMKILGEQVDIDAALPFVGQTLRALRKETEGGATLLGFVGAPWTLGAYAMEGSAPAEAGRAPHMRAMMDADPRLFGEYMTKLAVSVGEYACYQAEQGAQVIQFFESWAHRMTVADFEKWGRPYAEMSMNMVRERHPGVPVIYFANGGSAYLESMRGM 313          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2BY39_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BY39_9STRA)

HSP 1 Score: 371 bits (952), Expect = 2.310e-124
Identity = 194/310 (62.58%), Postives = 236/310 (76.13%), Query Frame = 3
Query:   45 RLYVLLATILLWATASSLVLRADVVRSLRAPRITGR-TTRTCSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMS 971
            RL   LA +L+ +T ++L+ R  + RS R+    GR +T     P     +  DHD+LLRVARGE  +R+PVWLMRQAGRYMK FR +SD YPFR RSETPE+A ELSLQ W+AFG+DGVIMFSDILTPLPAMG+EFD+VKGKGPVI NP R+   V A++PL+D    LPFVGETL+ LRSETEG+ATL+GFVG+P+TL AY+  G + K  + TK MM   P L H+L+  +A ++GDYACYQ E GAQVIQ FESWAH + P+QF+ FAKPYA+ AMSILKAKHP+VPVIYFANGGSSYLE Q  M+
Sbjct:   12 RLLFPLAGLLIGST-TALLSRHSLSRSTRSY---GRPSTLRMGSPTDAPFSNPDHDLLLRVARGEDGERTPVWLMRQAGRYMKDFRAYSDKYPFRQRSETPEMATELSLQCWRAFGMDGVIMFSDILTPLPAMGIEFDMVKGKGPVISNPPRSPEAVAALKPLEDPATSLPFVGETLKNLRSETEGRATLIGFVGSPFTLAAYSVNGMADKSCIETKKMMFHAPELLHALLDHLATAIGDYACYQVEHGAQVIQYFESWAHHLTPAQFDVFAKPYANKAMSILKAKHPDVPVIYFANGGSSYLELQTDMA 317          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2FRM6_9EUKA (Uroporphyrinogen decarboxylase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FRM6_9EUKA)

HSP 1 Score: 365 bits (938), Expect = 3.260e-122
Identity = 174/262 (66.41%), Postives = 215/262 (82.06%), Query Frame = 3
Query:  189 SAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            +A+D+HDILLR ARGE  DR+PVWLMRQAGRYM AFR+FS    FR RSETP+IA ELSLQPW+A+GVDGVIMFSDILTPLPA+G+EFDVV+G GPVI +P+RT +DV A+ PL D + KLPF+ E L  LR ETEG++TLLGFVGAP+TLVAYA EG +++H +H+K MMM  P + H+ +  +A ++G+YACYQ E GAQ IQ FESWAH + P+QF TFAKPYAD AM+ +KA+HP+VPV+Y+ANGGSSYLE Q  M+A
Sbjct:   60 AASDNHDILLRAARGEVVDRTPVWLMRQAGRYMGAFREFSTTIEFRQRSETPDIATELSLQPWRAYGVDGVIMFSDILTPLPALGIEFDVVRGSGPVISSPLRTLADVAAMTPLDDPEAKLPFIREILGNLRRETEGRSTLLGFVGAPFTLVAYAVEGQANRHCIHSKKMMMNNPEVLHAALDNLAVAIGEYACYQIESGAQAIQFFESWAHHLSPAQFATFAKPYADRAMAYVKARHPDVPVLYYANGGSSYLELQRDMAA 321          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A6T5PC14_HETAK (Uroporphyrinogen decarboxylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PC14_HETAK)

HSP 1 Score: 365 bits (937), Expect = 3.920e-122
Identity = 181/268 (67.54%), Postives = 214/268 (79.85%), Query Frame = 3
Query:  180 MCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPL---QDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            M M+   +HDIL+R ARGE+ +R+PVWLMRQAGRYM  FRK+SD  PFR RSETPEIA ELSLQ W+A+G+DGVIMFSDILTPLP  G+E+DVVKGKGP I +PIRT + VEA+  L    +I+  L FVGETLR LR+ETEGK +LLGF+GAPWTL AYA+EGGSSKH +  K MMM+EP LFH+ + K+A+ +G+YACYQ E GAQVIQVFESWAHQ+ P  FE FAKPYA   M  +KAKHP+VPVIYFANGGSSYLE Q  M +
Sbjct:   40 MRMAVDPEHDILVRAARGEKTERTPVWLMRQAGRYMADFRKYSDKLPFRERSETPEIATELSLQCWRAYGMDGVIMFSDILTPLPGFGIEWDVVKGKGPQIKDPIRTKAQVEALTSLGGSAEIEATLGFVGETLRNLRAETEGKTSLLGFIGAPWTLAAYATEGGSSKHCMVIKQMMMKEPELFHTYLGKLAEDMGNYACYQIENGAQVIQVFESWAHQLSPFFFEHFAKPYAQKTMETIKAKHPDVPVIYFANGGSSYLELQKDMKS 307          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A7S2C3G9_9STRA (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3G9_9STRA)

HSP 1 Score: 362 bits (930), Expect = 1.080e-121
Identity = 180/286 (62.94%), Postives = 220/286 (76.92%), Query Frame = 3
Query:  117 VRSLRAPRITGRTTRTCSVPPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            VRS RA      TT T  VP     A  DHD+L+R A+GE+ +R+PVWLMRQAGRYM  FRK+SD YPFR RSETPEIA ELSLQ W+A+G+DGVIMFSDILTPLPAMG++FDV+KGKGPVI NP R A+D+  +  L+D   +LPFVGETLR LR ETEG+ +LLGFVGAP+TL AY+  G ++KH   TK MM  +P + H+    +A ++G+YAC+Q E+GAQVIQ FESWAH + P QF  FAKPYA+ AM+I+KAKHP+VPVIYFANGGSSYLE Q  M++
Sbjct:   30 VRSRRAT-----TTTTMGVPTDTPFANPDHDLLVRAAKGEECERTPVWLMRQAGRYMADFRKYSDNYPFRVRSETPEIATELSLQCWKAYGMDGVIMFSDILTPLPAMGIDFDVIKGKGPVISNPPRCAADIAKLTHLEDPGAQLPFVGETLRNLRKETEGRTSLLGFVGAPFTLAAYSVNGMANKHCFETKKMMSHDPEVMHAFCDHLATNIGEYACHQIEEGAQVIQFFESWAHHLSPDQFSEFAKPYANKAMAIVKAKHPDVPVIYFANGGSSYLERQTDMTS 310          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: W7UA58_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA58_9STRA)

HSP 1 Score: 363 bits (932), Expect = 8.760e-121
Identity = 177/258 (68.60%), Postives = 210/258 (81.40%), Query Frame = 3
Query:  201 DHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            DHDILLRVARGEQ  R+PVWLMRQAGRYM AFR++S+ YPFR RSETP +AIELS+QP +AFGVDGVIMFSDILTPLPA+G+EFDV+ GKGPVI N I TA DV+ VR L D    LPFVGETLR L++E  G+ATLLGFVGAP+TL AY  EGGSSK+ L TK MMM +P L H  + K+A ++GDYACYQ E GA+VIQVFESWAHQ+ PSQF  ++KPYAD   +I+K +HPEVP+I+F +G SS+LE QG M+A
Sbjct:   74 DHDILLRVARGEQTHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPLPALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPASSLPFVGETLRTLKNEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVYLDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVTTIVKERHPEVPIIFFGHGASSFLELQGDMAA 331          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: L1K3R9_GUITC (Uroporphyrinogen decarboxylase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1K3R9_GUITC)

HSP 1 Score: 354 bits (908), Expect = 4.540e-118
Identity = 167/260 (64.23%), Postives = 209/260 (80.38%), Query Frame = 3
Query:  195 ADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            A DHDILLRVARGE+A+R+PVWLMRQAGRYMKAFR++SD YPFR RSETPEIAIELSLQPW+AFG DGVIMFSDILTPLP+MG+EFDVVKG GPVI +PIR+   +++++P+ D D  +PF+ E L++LR ET+GK TLLGFVG+P+TL AY+ EG + K+   TK MM  +P + H+ +  +A+++  YA +Q + GAQV+QVFESWAH + P  F  F KPYAD A+S++K KHP VP+IYFANGGSSYLE Q  M A
Sbjct:   25 ASDHDILLRVARGEEANRAPVWLMRQAGRYMKAFREYSDKYPFRQRSETPEIAIELSLQPWKAFGTDGVIMFSDILTPLPSMGIEFDVVKGSGPVIFDPIRSMDQIKSLKPIDDPDASVPFLREILQSLRKETDGKTTLLGFVGSPFTLAAYSVEGKADKNCFQTKKMMYNQPEILHAFLDHIAENIAAYAIHQIDCGAQVLQVFESWAHHLSPEDFLIFGKPYADKAISLIKQKHPNVPIIYFANGGSSYLELQRDMKA 284          
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Match: A0A4D9CWJ7_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWJ7_9STRA)

HSP 1 Score: 362 bits (929), Expect = 1.110e-116
Identity = 177/258 (68.60%), Postives = 209/258 (81.01%), Query Frame = 3
Query:  201 DHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPFRHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKGPVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFVGAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACYQAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIYFANGGSSYLESQGGMSA 974
            DHDILLRVARGEQ  R+PVWLMRQAGRYM AFR++S+ YPFR RSETP +AIELS+QP +AFGVDGVIMFSDILTPLPA+G+EFDV+ GKGPVI N I TA DV+ VR L D    LPFVGETLR L+ E  G+ATLLGFVGAP+TL AY  EGGSSK+ L TK MMM +P L H  + K+A ++GDYACYQ E GA+VIQVFESWAHQ+ PSQF  ++KPYAD   +I+K +HPEVP+I+F +G SS+LE QG M+A
Sbjct:  365 DHDILLRVARGEQTHRTPVWLMRQAGRYMAAFREYSEKYPFRQRSETPSMAIELSMQPLEAFGVDGVIMFSDILTPLPALGIEFDVISGKGPVIPNRIATAMDVDNVRRLDDPARSLPFVGETLRTLKKEVAGRATLLGFVGAPFTLAAYTIEGGSSKNCLKTKRMMMYDPTLLHVYLDKLATAIGDYACYQIENGAEVIQVFESWAHQLSPSQFLKYSKPYADKVTAIVKERHPEVPIIFFGHGASSFLELQGDMAA 622          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5X9_9PHAE3.650e-15882.64Uroporphyrinogen decarboxylase n=2 Tax=Ectocarpus ... [more]
A0A7S2UYW2_9STRA4.300e-13269.55Uroporphyrinogen decarboxylase n=1 Tax=Fibrocapsa ... [more]
A0A836CKK7_9STRA3.250e-12568.21Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A7S2BY39_9STRA2.310e-12462.58Uroporphyrinogen decarboxylase n=1 Tax=Dictyocha s... [more]
A0A7S2FRM6_9EUKA3.260e-12266.41Uroporphyrinogen decarboxylase n=1 Tax=Haptolina b... [more]
A0A6T5PC14_HETAK3.920e-12267.54Uroporphyrinogen decarboxylase n=1 Tax=Heterosigma... [more]
A0A7S2C3G9_9STRA1.080e-12162.94Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
W7UA58_9STRA8.760e-12168.60Uroporphyrinogen decarboxylase n=1 Tax=Nannochloro... [more]
L1K3R9_GUITC4.540e-11864.23Uroporphyrinogen decarboxylase n=3 Tax=Guillardia ... [more]
A0A4D9CWJ7_9STRA1.110e-11668.60Uroporphyrinogen decarboxylase n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:568066..571639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.3
Seed ortholog evalue1.4e-98
Seed eggNOG ortholog2880.D7FQS7
Preferred nameUROD3
KEGG rclassRC00872
KEGG koko:K01599
KEGG ReactionR03197,R04972
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
EggNOG free text desc.uroporphyrinogen decarboxylase activity
EggNOG OGsCOG0407@1,KOG2872@2759
EC4.1.1.37
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUroporphyrinogen decarboxylase, chloroplast precursor
Ec32 orthologEc-01_000360.1
Exons3
Model size975
Cds size951
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20169.1prot_S-ischiensis_contig85.20169.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 568066..571616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.3516467-CDS-S-ischiensis_contig85:568065..5684641622817344.3516467-CDS-S-ischiensis_contig85:568065..568464Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 568066..568464 -
1695741043.3417046-CDS-S-ischiensis_contig85:568065..5684641695741043.3417046-CDS-S-ischiensis_contig85:568065..568464Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 568066..568464 -
1622817344.3636193-CDS-S-ischiensis_contig85:570766..5710691622817344.3636193-CDS-S-ischiensis_contig85:570766..571069Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 570767..571069 -
1695741043.361058-CDS-S-ischiensis_contig85:570766..5710691695741043.361058-CDS-S-ischiensis_contig85:570766..571069Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 570767..571069 -
1622817344.374753-CDS-S-ischiensis_contig85:571367..5716161622817344.374753-CDS-S-ischiensis_contig85:571367..571616Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 571368..571616 -
1695741043.3715653-CDS-S-ischiensis_contig85:571367..5716161695741043.3715653-CDS-S-ischiensis_contig85:571367..571616Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 571368..571616 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817344.3870554-UTR-S-ischiensis_contig85:571616..5716391622817344.3870554-UTR-S-ischiensis_contig85:571616..571639Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 571617..571639 -
1695741043.3859935-UTR-S-ischiensis_contig85:571616..5716391695741043.3859935-UTR-S-ischiensis_contig85:571616..571639Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 571617..571639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20169.1

>prot_S-ischiensis_contig85.20169.1 ID=prot_S-ischiensis_contig85.20169.1|Name=mRNA_S-ischiensis_contig85.20169.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=317bp
MWGLQRDRLYVLLATILLWATASSLVLRADVVRSLRAPRITGRTTRTCSV
PPMCMSAADDHDILLRVARGEQADRSPVWLMRQAGRYMKAFRKFSDMYPF
RHRSETPEIAIELSLQPWQAFGVDGVIMFSDILTPLPAMGVEFDVVKGKG
PVIHNPIRTASDVEAVRPLQDIDGKLPFVGETLRALRSETEGKATLLGFV
GAPWTLVAYASEGGSSKHALHTKNMMMREPALFHSLMKKMAQSVGDYACY
QAEQGAQVIQVFESWAHQMVPSQFETFAKPYADMAMSILKAKHPEVPVIY
FANGGSSYLESQGGMSA
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mRNA from alignment at S-ischiensis_contig85:568066..571639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20169.1 ID=mRNA_S-ischiensis_contig85.20169.1|Name=mRNA_S-ischiensis_contig85.20169.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3574bp|location=Sequence derived from alignment at S-ischiensis_contig85:568066..571639- (Schizocladia ischiensis KU_0333)
CACAAGTAGGACGCACCGCCACCATGTGGGGCCTGCAGCGCGATCGGTTG TATGTCTTGCTGGCTACCATCCTGCTTTGGGCAACGGCTTCGTCGCTCGT ACTTCGTGCGGACGTCGTGCGATCCCTAAGGGCCCCCAGAATCACTGGAC GCACTACCCGTACATGTAGCGTGCCCCCGATGTGCATGTCCGCGGCAGAT GACCACGACATACTGCTGAGGGTAGCCCGGGGAGAGCAGGCAGACCGTTC TCCCGTGTGGCTCATGAGACAGGTAAGCTCCTTGGCTGAGGACTCTACGT CGCAGGCACCCTGACTTGTGCCTGATCAGCATGGTGCAGTTTGGTGTCAG CCCGCGAGCGTGGCTGGTATCTTTTTCGAACAGTACTGAGGCCCTCCAGA CCCAAGGTTGGTCTAGTAGTGCGTGATGGAATCCCTCCCTGGGACGAGCT CTGAGGCGGCCCTTTGGGCGTGACCAGGCACGCCGGTGTTGCTCTCCCGC CATATCGGCAGCTGAGCAACCTGCTGACTAGTAGCCTACTGACTTGCCGT CGGCCGACACTCCATGGCAGGCTGGACGGTACATGAAGGCTTTTAGGAAG TTCTCGGACATGTACCCGTTCCGTCACCGTTCCGAGACGCCTGAAATAGC CATCGAGCTGTCCCTGCAGCCGTGGCAGGCCTTCGGCGTGGATGGGGTGA TCATGTTCTCAGACATACTCACACCCCTTCCTGCCATGGGAGTGGAGTTT GACGTGGTGAAGGGAAAGGGGCCGGTCATCCACAATCCCATACGGACGGC CTCTGATGTGGAGGCGGTGCGTCCGCTTCAGGATATTGATGGGAAGCTGC CCTTCGTGGGGGAGACGCTCAGGGTGAGTCGCACAAATCGCTTGAGCTAC GGCTGCTCAACTTACTGTAGGGACAACAGACTGCAGTGTGTGCTTCCATG ATTTACGGCATAGTAGGTCCGGCACACAGCACCGCGTCGTGGGCTCATGA TAGTTGCACTGGAATTGCTACACGTGGTCCAGTCACACTATCCTTGTGCA GTAAACGTTTTCTTCCAAGTGTGTTTTTATGCAGTACTTGGAAGTACGGT ATGTGCTCGTGGACCGGCGTCTTTCGACGTAGTAGCCGTTGTGCAGACAG CCGATAGCCCAAATTTTTTCTTACAGGTTGCTCCTCTGTCGAGGAGTAGG TAATGAGCAAATAGACCCACACATTCTTGCTAGGCCGGGAGGGAGCATTC GGGTGTATGCTGATCAGGCACAAAATGTACACTGTACGAGTACAGCACGA GTACATGTACTGTAGGTCGTACCTACTGCAAATGTACTTGTACACATGTA CTCGAGCTGTGTTTGCTTTAAGTCCCAACACGATCGGCCACTTCATGTAC TCTATGTAGTGAGCCTCGCTTGACTTTGCAGTGTGAGAGTATGTGTTTGC TTGTACTCAAACTTAGTACAGTAAGAGTACTCGAGTACTGCTTACTTCAA AGTACACAGGTACAGTAATCACGTCGTGTTTGCTGTACTCCCGAGACCTT TGGCCACTATAGCGCCTCGACTGAGACGGGGCAGCCCCCCTGCCTCCCCA CACCCGGCAGAGCCAGTATGAGTACTTCGTACTGCAGGCACCCACTCAGT TGCTGTTAGAATTGTACTGTACAAGTGCCTACCTCCCAATAGTTCAGTAA GTTGTCCCATCAACTCAGAAGGGAACCATTGCATATGGTCGTGGGCTACG GCAAGCCCAGCTTGAGTACTTCCAAGTACATACTGTACCTTCTGCTGGGC ATTGTCCGGCGACCTAGGTATAGCGGTCGGGATCAGTCATCCCGGTTGTT CCTCCCGTGACCGTTAGGGTGCCGGCGTGCCCAAGAGCAACTCTGCGAAG AGACTCACAAGTACTCGCCGACGGCTACGCTTTGTCGTTGTCTAGAGCTA GCGAGCGGCCCCTCATCCGGGTTGCCGATGCCAAGGCACAACGGCATTCC GGGCTTGGCCTGTGTGCGTCCTGGCCTGTGCAAACCTGGCATGCTCTGTC CCGGCCTAATTGGGATGCGAGAGTCCATGGCAAAGTAGCTACTCCTGTCG AGGGCAAACCTGAAGTTTCGGCTTAGAGCTGTCGGCAATGCGTGCAAGGT GTTGTCGCAATACAAGCCAATGAGTGCACAGAGAGACCTACCTTATTGTG AGCTTAGCATGCGTGACTACCTGGTGGGTGCACACCCCGATATGTTCCAT CCCAGTATAGTATAGTACCTTGAAGTACTACCTGTACTGAAGTGCCCATA CCTACTCTGTAACACAGTGAGAGGGGCATGAGGTTGTACGTACCATAGTA CCTATGCATAGACCGTACTCTACTTGGAAGTATGATATGTACAGTACTTC GAAGTACTTGAAATGGCCCCAGGTCTCAGTCACCAACGTGTACCGGAACA CGAACATGTTGAGGGTGATGCTTATATCTTGGCAGCGCACTATGTACTTC CAAGTGCAGTACGTTTATAGTTCTCAGTACATCGTTGTGCACAACACCCT TCATGCTGCATTACATTGTTCTAGTACTTGGAAGTACCGTGTCACAGCGC TTACACTGCTTTGTTGTCATGGTTTTGTTGTGTCAGAGGGGTTTGACGAG CCAATGAGCACTCGATATACTTCTACGTACACGTGTACGTCGGAGGGGTT TTGCTCGATTCTCGGAAGATACGCATGGTGAGTGGTGAAAAATCTTGGAC TGCAGCACCATATACAAAGTACTTCCAAGTGTGCTCGGAGCGCAAATCAT GTGCCTGCCGGGATGGGCGGGGCAGCGATAGTGATACCCTCGGGCGTTGA GCCCGAAGCAGTCCTGCTGTGCCGGTACAACTCGTATCCTGTTCTTCTTA CATGTCCGAGGTGTGTGCTGTGTTGTGTTCCTCTTCATGCGTAGTTGGTG AGCGTGCCTCGCAGGACTTGTCAAGAGTATTTTAGGAGTTTGAGCACAAG CGAACAGTACTGTACAGTAGCGCAGTGTATCTGCAAGTACTAGTACGGCC GCCGGAGGGCGGCTGAGTGCACATGTGCTGCTTCTTGTAGTGCCGACCTC CCCCCCAGACCTTGCGAAGCGAAACAACCTCAGGCAAGGTAACCCTCCTT TTTGCATTTTCCGTGTTCCCCCCAGGCCTTGCGAAGCGAAACCGAAGGCA AGGCGACCCTCCTGGGCTTTGTGGGCGCGCCGTGGACGTTGGTGGCCTAC GCCTCGGAGGGCGGGAGCAGCAAGCACGCCTTGCACACCAAGAACATGAT GATGCGGGAGCCGGCACTGTTCCACTCCCTCATGAAGAAGATGGCGCAGA GCGTGGGAGACTACGCCTGCTACCAGGCCGAGCAGGGGGCGCAAGTGATC CAGGTGTTTGAGTCGTGGGCGCACCAGATGGTCCCCAGCCAGTTTGAGAC ATTTGCCAAGCCGTACGCTGACATGGCCATGTCCATCCTCAAGGCCAAGC ACCCCGAGGTGCCCGTCATCTATTTTGCCAACGGCGGCAGCAGCTACCTG GAGAGCCAAGGCGGCATGTCGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:568066..571639-

>mRNA_S-ischiensis_contig85.20169.1 ID=mRNA_S-ischiensis_contig85.20169.1|Name=mRNA_S-ischiensis_contig85.20169.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1902bp|location=Sequence derived from alignment at S-ischiensis_contig85:568066..571639- (Schizocladia ischiensis KU_0333)
ATGTGGGGCCTGCAGCGCGATCGGTTGTATGTCTTGCTGGCTACCATCCT
GCTTTGGGCAACGGCTTCGTCGCTCGTACTTCGTGCGGACGTCGTGCGAT
CCCTAAGGGCCCCCAGAATCACTGGACGCACTACCCGTACATGTAGCGTG
CCCCCGATGTGCATGTCCGCGGCAGATGACCACGACATACTGCTGAGGGT
AGCCCGGGGAGAGCAGGCAGACCGTTCTCCCGTGTGGCTCATGAGACAGA
TGTGGGGCCTGCAGCGCGATCGGTTGTATGTCTTGCTGGCTACCATCCTG
CTTTGGGCAACGGCTTCGTCGCTCGTACTTCGTGCGGACGTCGTGCGATC
CCTAAGGGCCCCCAGAATCACTGGACGCACTACCCGTACATGTAGCGTGC
CCCCGATGTGCATGTCCGCGGCAGATGACCACGACATACTGCTGAGGGTA
GCCCGGGGAGAGCAGGCAGACCGTTCTCCCGTGTGGCTCATGAGACAGGC
TGGACGGTACATGAAGGCTTTTAGGAAGTTCTCGGACATGTACCCGTTCC
GTCACCGTTCCGAGACGCCTGAAATAGCCATCGAGCTGTCCCTGCAGCCG
TGGCAGGCCTTCGGCGTGGATGGGGTGATCATGTTCTCAGACATACTCAC
ACCCCTTCCTGCCATGGGAGTGGAGTTTGACGTGGTGAAGGGAAAGGGGC
CGGTCATCCACAATCCCATACGGACGGCCTCTGATGTGGAGGCGGTGCGT
CCGCTTCAGGATATTGATGGGAAGCTGCCCTTCGTGGGGGAGACGCTCAG
GGCTGGACGGTACATGAAGGCTTTTAGGAAGTTCTCGGACATGTACCCGT
TCCGTCACCGTTCCGAGACGCCTGAAATAGCCATCGAGCTGTCCCTGCAG
CCGTGGCAGGCCTTCGGCGTGGATGGGGTGATCATGTTCTCAGACATACT
CACACCCCTTCCTGCCATGGGAGTGGAGTTTGACGTGGTGAAGGGAAAGG
GGCCGGTCATCCACAATCCCATACGGACGGCCTCTGATGTGGAGGCGGTG
CGTCCGCTTCAGGATATTGATGGGAAGCTGCCCTTCGTGGGGGAGACGCT
CAGGGCCTTGCGAAGCGAAACCGAAGGCAAGGCGACCCTCCTGGGCTTTG
TGGGCGCGCCGTGGACGTTGGTGGCCTACGCCTCGGAGGGCGGGAGCAGC
AAGCACGCCTTGCACACCAAGAACATGATGATGCGGGAGCCGGCACTGTT
CCACTCCCTCATGAAGAAGATGGCGCAGAGCGTGGGAGACTACGCCTGCT
ACCAGGCCGAGCAGGGGGCGCAAGTGATCCAGGTGTTTGAGTCGTGGGCG
CACCAGATGGTCCCCAGCCAGTTTGAGACATTTGCCAAGCCGTACGCTGA
CATGGCCATGTCCATCCTCAAGGCCAAGCACCCCGAGGTGCCCGTCATCT
ATTTTGCCAACGGCGGCAGCAGCTACCTGGAGAGCCAAGGCGGCATGTCG
GCGGCCTTGCGAAGCGAAACCGAAGGCAAGGCGACCCTCCTGGGCTTTGT
GGGCGCGCCGTGGACGTTGGTGGCCTACGCCTCGGAGGGCGGGAGCAGCA
AGCACGCCTTGCACACCAAGAACATGATGATGCGGGAGCCGGCACTGTTC
CACTCCCTCATGAAGAAGATGGCGCAGAGCGTGGGAGACTACGCCTGCTA
CCAGGCCGAGCAGGGGGCGCAAGTGATCCAGGTGTTTGAGTCGTGGGCGC
ACCAGATGGTCCCCAGCCAGTTTGAGACATTTGCCAAGCCGTACGCTGAC
ATGGCCATGTCCATCCTCAAGGCCAAGCACCCCGAGGTGCCCGTCATCTA
TTTTGCCAACGGCGGCAGCAGCTACCTGGAGAGCCAAGGCGGCATGTCGG
CG
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