mRNA_S-ischiensis_contig85.20160.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20160.1
Unique NamemRNA_S-ischiensis_contig85.20160.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:501054..504476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size639
Cds size609
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20160.1prot_S-ischiensis_contig85.20160.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 501054..504447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.2813263-CDS-S-ischiensis_contig85:501053..5011441622817343.2813263-CDS-S-ischiensis_contig85:501053..501144Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 501054..501144 -
1695741042.4934862-CDS-S-ischiensis_contig85:501053..5011441695741042.4934862-CDS-S-ischiensis_contig85:501053..501144Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 501054..501144 -
1622817343.2954128-CDS-S-ischiensis_contig85:502101..5022201622817343.2954128-CDS-S-ischiensis_contig85:502101..502220Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 502102..502220 -
1695741042.5104012-CDS-S-ischiensis_contig85:502101..5022201695741042.5104012-CDS-S-ischiensis_contig85:502101..502220Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 502102..502220 -
1622817343.3079555-CDS-S-ischiensis_contig85:503946..5041381622817343.3079555-CDS-S-ischiensis_contig85:503946..504138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 503947..504138 -
1695741042.5242631-CDS-S-ischiensis_contig85:503946..5041381695741042.5242631-CDS-S-ischiensis_contig85:503946..504138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 503947..504138 -
1622817343.3204584-CDS-S-ischiensis_contig85:504240..5044471622817343.3204584-CDS-S-ischiensis_contig85:504240..504447Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 504241..504447 -
1695741042.536066-CDS-S-ischiensis_contig85:504240..5044471695741042.536066-CDS-S-ischiensis_contig85:504240..504447Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 504241..504447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.3326607-UTR-S-ischiensis_contig85:504447..5044761622817343.3326607-UTR-S-ischiensis_contig85:504447..504476Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 504448..504476 -
1695741042.546374-UTR-S-ischiensis_contig85:504447..5044761695741042.546374-UTR-S-ischiensis_contig85:504447..504476Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 504448..504476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20160.1

>prot_S-ischiensis_contig85.20160.1 ID=prot_S-ischiensis_contig85.20160.1|Name=mRNA_S-ischiensis_contig85.20160.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=203bp
MVPVHEASLWGFDSSRSVGRDGEPPPSSPSWDSPSASTSTSRRFRVRLSR
TGGAGVQGSEGHQVPTIIEEPAFVPLSDFAVNVESGLRSGLACLLSLLWR
ELGLPIAGLGFFSVVVSVVAVGRTAGETLDRGLGALHGAILGVVSATVVR
LLEKVSSWLGLAAFFFAVFFLVRSRRLPVLGRRFGVLTVVIGTLGLANMA
FPS
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mRNA from alignment at S-ischiensis_contig85:501054..504476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20160.1 ID=mRNA_S-ischiensis_contig85.20160.1|Name=mRNA_S-ischiensis_contig85.20160.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3423bp|location=Sequence derived from alignment at S-ischiensis_contig85:501054..504476- (Schizocladia ischiensis KU_0333)
GCCCTGGCTGACCACGAGGGTTTTGAATCATGGTGCCCGTGCATGAAGCC
TCGTTGTGGGGTTTTGACTCCAGCAGGAGTGTCGGTCGCGATGGAGAACC
CCCCCCCTCTTCGCCGTCGTGGGATTCGCCCTCTGCGTCCACATCAACAA
GCAGGCGCTTCCGAGTGCGTTTGTCGAGGACAGGCGGCGCTGGAGTGCAG
GGGTCTGAGGGGCACCAAGTGCCGACAATAATTGAGGTCTGCGCTTCGGG
GGCGCTTAGTGGACTTGCCATCATCTCTCCCCTCTGATGTTGGCAGGCCA
TTTTCCCTGACCAAGAACACCATGCCCACAATTGGCAGGAACCGGCCTTC
GTCCCGCTCAGTGATTTCGCGGTGAACGTGGAGTCTGGCTTGAGATCCGG
CCTGGCCTGCCTGCTGAGCCTGCTTTGGCGTGAGCTGGGCCTGCCCATCG
CTGGACTGGGTTTCTTCAGCGTGGTGGTGTCTGTGGTGGCCGTGGGCCGA
ACTGCGGGCGAGACCCTCGACCGAGGCTTGGTAAGTTGAAGCTTGTGTGC
GTGCGTGCGTGAGTGAGTGCGTGCATTGTCGTGACAAATTACTTCTGAGT
ATGCACTGCGTGTGGCGCTGCAAGCACATGCGGTGGAACGAACCTCCTCA
TGTGTAGGTTTCGGTTGCGAATTTCACAGAAACAGTCGCGGCCCACCCCG
CATGAGCGGCCTGGCCTCAACAGCCCGGTCTGTGCAACAGTACATTACTG
TAGTAATGTTCCTGTCTGATTATGTCCGCCGATGATGTCCGCCATGTCTC
TTTGTGCCGAAGTTTCCTGCGACTCCTGGCCATGCTACTGTCGTGCTGCA
AAGCCAAAGTATGGACGTGTGGTACAAGAAGCCTGCAATTGTACTGAGAG
GTGTACTGTCTTTTGTACCAGTGTGCCTGGTCTTTGGAGTCTTTGTGGTG
GGACAGCGTTCCTCAACCAGTTTGAGGTGTCCGCCGAATGTATGACTGCT
GCATCGCAATACACAGTAAGGTATACTGTACTCACTCACCTCCAAGCGAT
TCCGCATTCATCAAGTACTTCCAGCAGCGCAGCAATGCTGTGTACTCCCC
CCTCCCCTCTCTTCCTCTTCCTGCTTCTCCTGTCCCTCCACTTCCCTACC
CCTGCCCCACACGCCCCTTCCCTGGTGAGCTAAGGAAGGGCCACTGCTTA
GTCCTCAGGGTAGTGGCGTGGCCCGCAGCCCCACCTGTGTTGTTGCTCTC
CTGTGAATAAGCACTTGTGTATACAGTACAGTAGTTTCGGTCGCCAATGA
GGCTTAGCCAATAAGGCGGTATTTTGCAATGCCCTACATACCCAGTAGAG
TACCCCGGCACTGCACTACTATGAAAATGCCACTGACTCATTGCTCATGC
TGGTACTGTACGAGTACAGGATATACTGGGAAGTGCTGCTGCAGCACTTG
CCCCCTCCATGCCTCCACTCCAGCGTACTCGTACCGTTTTGCGCCCACCC
CTCCCTCCTGCCAACGCCAATCCACCTCGTTCTTGTAAGATATGCTCTAC
TACAGTACTCTCATACGAAGTACATACCAATGCCAATGCACCTCGTTATT
ATTGTACGCTATGCTCTACAACCCTCCTACATGCCAACGCCAATGCACCT
TGTTTTTATTGCATGCTATGCTCTACTATACTCGTACATACCAACCCCAA
TGCACTTCATTCTTGTACGCTATGCTCTACAACACTCCTACATACCAACG
CCAATGCACCTCATTATTGTTGTACGCTATGCTCTCCTACTGTACACTCC
TACATACCAATGCCAATCCGCCTCGTTCTTGTACACGATACTCCACTACA
CGCTCATACTTCGAAGTACTTTGTACATTACATTGCATCGAACTGTGCAG
GGGGTCCTCCATGGTGCCATTCTGGGAGTTGTGTATACGCTATCTCTACT
ATACTCGTACATACTAATGCCAATCCACCTCATTCTTGTACGCTATGCTC
TACTACACTCGTACATGCTTCGAAGTAATTCGTACATTACTGCACAATAC
ATTGCATCGCATTGTGCAGGGGGGCCTCCATGGTGCCATTCTGGGAGTCA
CCTCGTTCTTGTATTCTAGGAGTTGTGTACTTCGAAGTATGCACTATGCT
CTACTACACTCCTACATACTTCGAGTACTTCGAAGTACTTCGTACATTGC
ACTACATTGCATGTCCATACTTTGTACAGTACATTCCATTGCATCGCGTT
GTGCAGGGGGCCCTCCATGGCGCGATTCTGGGAGTAGTGTCGGCCACCGT
GGTGCGTCTCCTGGAGAAGGTTTCCTCCTGGCTCGGACTCGCAGCTTTCT
TCTTCGCCGTCTTCTTCCTTGTCAGGTCAGTTCAGACGGCATTAGATCCA
ATTGGGCTCCGGCGAAAAAAGGATGGCATTTGCCAATAAGCACTGTAGCT
GGCGCCGAATACGGAAGGGCGGTTTTGCCCCAGGCCAACCAAAGTGCTAA
CCCTTCGTTCCGGCTGTGGCGGGCACACTGAATCGAGATTCTTAACTCCC
TTTCCTCGCGCGAACACAAAATGCGCGCGCGATGCTCGTGCCTCTAGGAA
CGGTGTCAGTGCGTGGATTGGCAGTATTGGTCAGTTCGTGAAAGCCCCAT
TCTCGCAGGAAATCACGCCCCCCTGGGGGATTCGAAACCGCGACCTTTGG
GTTGTGAACCTAACCCGTTCCTGGACCGCTCGAAAGTACAGTACAAGTCC
TTCAGTACCTACTTTGTGGTACTTCTGCAACTACTTGGTACAGTTACTGT
ATGGTACTGTACTGTACTGTACAGTATCCTGACCCACAGTATGCAACTAC
TTGGTACTGGTACTCGAATACTGTAATGTACAGTACAGTACAGTATCCTG
GCCCACAGTACAGCGTACTGACGCACATGACGTGCGCCCGGGGGGCCTGT
CACGCCACTTGCAGGAGCAGACGCCTGCCGGTGCTTGGGAGGCGTTTTGG
TGTCCTGACTGTGGTAAAGTACTCTACAGTACAAGTACCTACTTTGTGGT
ACAGTGCTACTTTGGTTGGTACTGTGCTGTGCAGTACAGTACAGTATCCT
GACCTGCAGTACAGTGTACTGACCCATTTGACCTGTCACGCCACTTGCCG
GAGCAGACGCCTGCCGGTGCTGGGAAGGCGTTTTGGTGTCCTGACGGTCG
TAAAGTACAGTACAAGTACCTACTTTGTGGTACTTCTGCAACTTCGGTTG
ATACTGTGCTGTACAGTACAGTACAGTATCCTGACCGACAGTACAGCGTA
CTGACCCACATGACCTGTCACGCCACTTGCAGGAGCAGACGCCTGCCGGT
GCTAGGAAGGCGTTTTGGTGTCCTGACGGTGGTCATCGGGACCCTCGGCC
TGGCCAACATGGCTTTCCCCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:501054..504476-

>mRNA_S-ischiensis_contig85.20160.1 ID=mRNA_S-ischiensis_contig85.20160.1|Name=mRNA_S-ischiensis_contig85.20160.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1218bp|location=Sequence derived from alignment at S-ischiensis_contig85:501054..504476- (Schizocladia ischiensis KU_0333)
ATGGTGCCCGTGCATGAAGCCTCGTTGTGGGGTTTTGACTCCAGCAGGAG
TGTCGGTCGCGATGGAGAACCCCCCCCCTCTTCGCCGTCGTGGGATTCGC
CCTCTGCGTCCACATCAACAAGCAGGCGCTTCCGAGTGCGTTTGTCGAGG
ACAGGCGGCGCTGGAGTGCAGGGGTCTGAGGGGCACCAAGTGCCGACAAT
AATTGAGATGGTGCCCGTGCATGAAGCCTCGTTGTGGGGTTTTGACTCCA
GCAGGAGTGTCGGTCGCGATGGAGAACCCCCCCCCTCTTCGCCGTCGTGG
GATTCGCCCTCTGCGTCCACATCAACAAGCAGGCGCTTCCGAGTGCGTTT
GTCGAGGACAGGCGGCGCTGGAGTGCAGGGGTCTGAGGGGCACCAAGTGC
CGACAATAATTGAGGAACCGGCCTTCGTCCCGCTCAGTGATTTCGCGGTG
AACGTGGAGTCTGGCTTGAGATCCGGCCTGGCCTGCCTGCTGAGCCTGCT
TTGGCGTGAGCTGGGCCTGCCCATCGCTGGACTGGGTTTCTTCAGCGTGG
TGGTGTCTGTGGTGGCCGTGGGCCGAACTGCGGGCGAGACCCTCGACCGA
GGCTTGGAACCGGCCTTCGTCCCGCTCAGTGATTTCGCGGTGAACGTGGA
GTCTGGCTTGAGATCCGGCCTGGCCTGCCTGCTGAGCCTGCTTTGGCGTG
AGCTGGGCCTGCCCATCGCTGGACTGGGTTTCTTCAGCGTGGTGGTGTCT
GTGGTGGCCGTGGGCCGAACTGCGGGCGAGACCCTCGACCGAGGCTTGGG
GGCCCTCCATGGCGCGATTCTGGGAGTAGTGTCGGCCACCGTGGTGCGTC
TCCTGGAGAAGGTTTCCTCCTGGCTCGGACTCGCAGCTTTCTTCTTCGCC
GTCTTCTTCCTTGTCAGGGGGCCCTCCATGGCGCGATTCTGGGAGTAGTG
TCGGCCACCGTGGTGCGTCTCCTGGAGAAGGTTTCCTCCTGGCTCGGACT
CGCAGCTTTCTTCTTCGCCGTCTTCTTCCTTGTCAGGAGCAGACGCCTGC
CGGTGCTAGGAAGGCGTTTTGGTGTCCTGACGGTGGTCATCGGGACCCTC
GGCCTGGCCAACATGGCTTTCCCCAGCGAGCAGACGCCTGCCGGTGCTAG
GAAGGCGTTTTGGTGTCCTGACGGTGGTCATCGGGACCCTCGGCCTGGCC
AACATGGCTTTCCCCAGC
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