mRNA_S-ischiensis_contig85.20158.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20158.1
Unique NamemRNA_S-ischiensis_contig85.20158.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:490947..493019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size506
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20158.1prot_S-ischiensis_contig85.20158.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 490947..493019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.1639278-CDS-S-ischiensis_contig85:490946..4910341622817340.1639278-CDS-S-ischiensis_contig85:490946..491034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 490947..491034 -
1695741040.1173437-CDS-S-ischiensis_contig85:490946..4910341695741040.1173437-CDS-S-ischiensis_contig85:490946..491034Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 490947..491034 -
1622817340.1766617-CDS-S-ischiensis_contig85:491651..4918461622817340.1766617-CDS-S-ischiensis_contig85:491651..491846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 491652..491846 -
1695741040.1301637-CDS-S-ischiensis_contig85:491651..4918461695741040.1301637-CDS-S-ischiensis_contig85:491651..491846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 491652..491846 -
1622817340.18807-CDS-S-ischiensis_contig85:492798..4930191622817340.18807-CDS-S-ischiensis_contig85:492798..493019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 492799..493019 -
1695741040.1395237-CDS-S-ischiensis_contig85:492798..4930191695741040.1395237-CDS-S-ischiensis_contig85:492798..493019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 492799..493019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20158.1

>prot_S-ischiensis_contig85.20158.1 ID=prot_S-ischiensis_contig85.20158.1|Name=mRNA_S-ischiensis_contig85.20158.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
TSQGLSGHCHARGGGGASGDLSASARRSGCGNGRCCLFWRSQGRSSSVSR
EETETRTHLPLRVTLRPALLELGRAMEALLRAYQAARLEVIYGLKGESSG
QSLTDVHVNVNGANASPPLVAGASADANGQHHRGMPSGGQKTNTKLQEAI
TKLRLGEASTTGLESPLP
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mRNA from alignment at S-ischiensis_contig85:490947..493019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20158.1 ID=mRNA_S-ischiensis_contig85.20158.1|Name=mRNA_S-ischiensis_contig85.20158.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2073bp|location=Sequence derived from alignment at S-ischiensis_contig85:490947..493019- (Schizocladia ischiensis KU_0333)
ACAAGCCAGGGGCTCTCCGGACACTGCCATGCACGGGGGGGGGGTGGCGC
GTCAGGTGATTTAAGTGCCTCTGCACGGAGGAGCGGCTGCGGCAACGGCC
GGTGTTGCTTGTTCTGGAGGTCCCAGGGGAGGAGCAGCTCTGTTAGCCGT
GAGGAGACAGAGACACGTACACACCTGCCCCTTCGCGTGACCCTGCGCCC
CGCGCTTCTGGAGCTGGGCAGGCACGTGTTTTGAGTGTTGTGTATTGTAC
TGTACTGTACAGTGGTGCTTGCACTTCGAAGGACTTCTGTCAGTACAGTA
TTCGAGTACGAGTACTTCGGAGTACTTCGTACAGTATATTATTAATATTA
TGACCAATTGTATATATATATGTACTCACGTGGTGCTTGCCGTAGTCCCG
AGACCATTGACCCCGCGCCTCGTTCGAGACGGAGCAGGTCAGGCAAGGAG
CAAACATCGAGAGCGCCGTGGGCAATCATTCGACAACAGTACAAGTAGCT
GCTCAACATGAAGTAAAGGCTACTACAAGTAAATAAGTACTATTTGAGTA
TATCCGAGACAATATCGCTCAGGCATGGCGACCCGAGTGGCCGCCAGGCC
GAGAGCCACGCCACGCCGGTGTCACCGGGATGTGGGCAAAGTATTGGTCG
AGATTTGGGCAAAATATTTCGAGTTTCGAGGAAAATATCTGGGCAAAAGA
AATGGTCCTTTTGTAGAAGAGCTAGGCGTGAGCTCGTTTCAACGGCTCGT
CACGACTCATGCCATGGCGAGGTTAGTTGCGGGCCGTGGTGATTTTTGCT
GGCATGATACTTCGAAGTATCGGCGTTGCGATTGTTGTACGAGTGACGTG
CCCAATGGCCGTCGCTTGGCACGCCTGATACTGACAATTCGTATTGTAGG
TACGCTGTAGGTACTTGCACAGTAGTCGTACGGCGCACAAGTGCAACTGT
AGGTGTTGATTTTGTAAGCGTGCTTGGTATCAGTGATGGAATATCTAAGC
GACCCAACCTATCTATCGACAGTACTGATCCATATATCTATCGACAGTCG
ATATTGGATAGTTTGACGCACAATCCAAGTAGCTACTGTAGTAGCGCCAC
CCACAAAATCACCCGAGCCCGACAACTATCTACTGATCGATAGAACATCA
CTGCTTGGTATTGGCGCCCGCAGGGCCATGGAGGCGCTGCTGAGGGCTTA
CCAGGCCGCCCGGCTGGAGGTCATCTATGGCTTGAAAGGCGAATCCTCAG
GCCAGAGCTTGACGGACGTGCACGTGAACGTGAATGGGGCAAACGCCTCC
CCGCCCCTTGTTGCAGGGGCTTCAGCGGACGCCAACGGACAGCACCACCG
AGGGATGCCGTCAGGAGGGTGGGTATGGCGTGTGTCTATGTAGGGCAGAT
TGACTTGAACTGTACTCCAAAGCTTGGACTGTACTTGCAACCTGTACTTG
AACTGTGCTTCTGTCCGTCGGCTGTGTGTCTAGGGCAGATTGACGCGGGG
TGCAGCGTGCTGTGCTGCTGCAGCTGCGCTTGAACTGAATGTCCTCCAAA
GCTTGGAGTGTACGTGCAACCTGTGCTTGAACTGTGCTTCTGTACTTGAA
CTGTACTAGAAAGCTTGCACTGTAATTGCAACCTGTGCTTGAACTGTGCG
TCTGTACTCGATCTGTACTTGAACTGTACTCCAAAGCTTGGACTGTACTT
GAACTTTGCTTATGTAATCGAACTGCACTTGAACTATATTCCAAACTGTG
CTTGAACTGTACCTGAACGAACAATACAGTACACAGGGGACAATACAATA
CTGGGGGGTGTCCCCTGTGCCACATTGGTCACTTCACTCACTGTACAGTA
AATGTGCCGCTCGATGAGGCCACCAACGCCACTGCACTGCCCCCCCCCCC
CCCTCCAACACACGCAAGTCCTCCCCTCCCCCTCCCCCCCTGCCTCGCTC
TGGCCGTTCCCATTCCCGCAACAAAACCACCAAAGCCAAAAAACAAACAC
CAAGCTGCAAGAGGCCATCACAAAGCTCCGTCTGGGGGAGGCATCCACCA
CAGGCTTGGAATCCCCCTTGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:490947..493019-

>mRNA_S-ischiensis_contig85.20158.1 ID=mRNA_S-ischiensis_contig85.20158.1|Name=mRNA_S-ischiensis_contig85.20158.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig85:490947..493019- (Schizocladia ischiensis KU_0333)
ACAAGCCAGGGGCTCTCCGGACACTGCCATGCACGGGGGGGGGGTGGCGC
GTCAGGTGATTTAAGTGCCTCTGCACGGAGGAGCGGCTGCGGCAACGGCC
GGTGTTGCTTGTTCTGGAGGTCCCAGGGGAGGAGCAGCTCTGTTAGCCGT
GAGGAGACAGAGACACGTACACACCTGCCCCTTCGCGTGACCCTGCGCCC
CGCGCTTCTGGAGCTGGGCAGACAAGCCAGGGGCTCTCCGGACACTGCCA
TGCACGGGGGGGGGGTGGCGCGTCAGGTGATTTAAGTGCCTCTGCACGGA
GGAGCGGCTGCGGCAACGGCCGGTGTTGCTTGTTCTGGAGGTCCCAGGGG
AGGAGCAGCTCTGTTAGCCGTGAGGAGACAGAGACACGTACACACCTGCC
CCTTCGCGTGACCCTGCGCCCCGCGCTTCTGGAGCTGGGCAGGGCCATGG
AGGCGCTGCTGAGGGCTTACCAGGCCGCCCGGCTGGAGGTCATCTATGGC
TTGAAAGGCGAATCCTCAGGCCAGAGCTTGACGGACGTGCACGTGAACGT
GAATGGGGCAAACGCCTCCCCGCCCCTTGTTGCAGGGGCTTCAGCGGACG
CCAACGGACAGCACCACCGAGGGATGCCGTCAGGAGGGGCCATGGAGGCG
CTGCTGAGGGCTTACCAGGCCGCCCGGCTGGAGGTCATCTATGGCTTGAA
AGGCGAATCCTCAGGCCAGAGCTTGACGGACGTGCACGTGAACGTGAATG
GGGCAAACGCCTCCCCGCCCCTTGTTGCAGGGGCTTCAGCGGACGCCAAC
GGACAGCACCACCGAGGGATGCCGTCAGGAGGCCAAAAAACAAACACCAA
GCTGCAAGAGGCCATCACAAAGCTCCGTCTGGGGGAGGCATCCACCACAG
GCTTGGAATCCCCCTTGCCGCCAAAAAACAAACACCAAGCTGCAAGAGGC
CATCACAAAGCTCCGTCTGGGGGAGGCATCCACCACAGGCTTGGAATCCC
CCTTGCCG
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