mRNA_S-ischiensis_contig85.20156.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI) HSP 1 Score: 156 bits (395), Expect = 9.680e-39 Identity = 86/174 (49.43%), Postives = 121/174 (69.54%), Query Frame = 1
Query: 49 KVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAEL-GKPHLDTG--ELIVSLVPWVSVTCFFRNSPN-GYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEALGIALQE 558
KVSLAL + A+F L P L E FEP+VW+ VT FVM AS V T++LRL+GTVLG +YG A+L G+P ++ + L+PWV+VTCFFRNS YA LVAAFTA ++ T + TVLG +G+ +L RI NT++G +VYL++D + P RAK++++EQ++ +L A +E
Sbjct: 725 KVSLALTLCAVFSLSPFLAELFEPSVWISVTASFVMDTQSASAVSTSLLRLVGTVLGAVYGILAAKLAGQPEDESYSFQTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLAPTRAKNLVLEQIYLSLDAAFRE 898
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.970e-27 Identity = 75/199 (37.69%), Postives = 113/199 (56.78%), Query Frame = 1
Query: 46 LKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAELGKPHLDTGELIVSLVPWVSVTCFFRNSPN-GYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLV-----------IDTVFVPVRAKSVLVEQLHEALGIALQEVRHNGTRLMDQLRRRV 606
LKV+L L + ALFVLV L ++ WV VT F++++D +S VT+ LRL+G+V+G +YG F+ EL + L PWV+ FF+NS + GYA +V+AFTA +++ GT G L RI+NTI+G+++Y+ +D + PVRAK +L +L EALG+ V +L+ Q+ V
Sbjct: 666 LKVALILTICALFVLVGYLSDKVAAGAWVGVTAGFIVSEDSSSAAVTSNLRLIGSVVGAMYGWFLTELVNNDAARKLAAIGLPPWVAFCAFFKNSKSHGYAAIVSAFTAVIIVLGTFNA-SAVGSVAPLTRIQNTILGLVIYMAXXXXXXXXXXAVDNLVFPVRAKVLLRGELAEALGLMRDAVNCLDAQLLGQVAGAV 863
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A6H5K0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE) HSP 1 Score: 112 bits (281), Expect = 5.520e-24 Identity = 59/126 (46.83%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 217 GTLYGTFVAEL-GKPHLDTGEL--IVSLVPWVSVTCFFRNSPN-GYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEALGIALQEVRHNGTRL 582
G +YG A+L G+P +++ L L+PWV+VTCFFRNS YA LVAAFTA ++ T ++TVLG +G+ +L RI NT++G +VYL++D + VP RAK++L+EQ++ +L A +E+ NG R+
Sbjct: 19 GAVYGILAAKLAGQPGVESYNLRTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSSTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLLLEQIYLSLDAAFRELSINGERM 144
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A482S4E0_9ARCH (FUSC family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4E0_9ARCH) HSP 1 Score: 91.3 bits (225), Expect = 1.580e-16 Identity = 58/156 (37.18%), Postives = 88/156 (56.41%), Query Frame = 1
Query: 46 LKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAEL---GKPHLDTGELIVSLVPWVSVTCFFRNSP-NGYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVR 501
+KVS+A +A+ +L L F+ +W+ + + + D +S +T+V RL GTV+G +Y V ++ G + D I SLV WV+V FR+ P +GY+ VA+FT LLL GTA D + A RIE T +GI +YL +D + +P R
Sbjct: 295 IKVSIAATIASSLMLYKALPFLFQGGLWMTLVTILIKQDLASSSFLTSVQRLEGTVVGAMYALLVYQIFSCGSVNCDGWVEIPSLVFWVAVCGLFRSGPQHGYSATVASFTPILLLLGTA-----DTEAGAWGRIEETFIGIAIYLAVDNLILPQR 445
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A482T3M2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3M2_9ARCH) HSP 1 Score: 86.3 bits (212), Expect = 5.580e-15 Identity = 51/174 (29.31%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 46 LKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAEL---GKPHLDTGELIVSLVPWVSVTCFFRNSP-NGYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEALGIALQ 555
+KVSLA + + +L + ++ +W+ + + D +S ++T++ R+ GTV+G +Y F+ E+ G H + ++V W+++ FR P +GY+ VAAFT ++L GT D + A RIE T +GI+VYL +D + +P R + + + +A Q
Sbjct: 207 MKVSLAASITSTLLLYNAVPFLYQKGLWMTLVTFLIKQDLASSSLLTSIQRIEGTVVGVMYSYFIHEVFSCGTVHCGYWVNVPAIVIWIALCGVFREGPQHGYSAYVAAFTPIIILLGT-----NDTEQGAWGRIEETFLGIVVYLAVDNLVMPQRTAPAIATSVLNCINVARQ 375
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: W7TWS6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWS6_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.110e-12 Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 1
Query: 40 QQLKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAELGKPHLDTGELIVSLVPWVSVTCFFRNSPN-GYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEAL 540
Q LKV+LA+L+A++ VL D + +W P+TV M+ +S + R+ GTVLG + G V P ++ ++ L WV V F R S G A A TA +++ G V+G G A+ RI I+G ++Y+ +D + P RAK +L QL E++
Sbjct: 749 QPLKVALAILLASIVVLADDKHLGLQ-TIWCPITVAQTMSSHPSSAFKSGANRVQGTVLGAVMGMAVTT-WAPVVNKVAIVFILTAWVFVCAFSRGSRTYGEAATSAGLTAPIIVIGP--VVGSSG---AVVRISQVILGTVIYVGVDNLIFPTRAKILLRSQLCESV 909
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A7S0H3C4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H3C4_9EUKA) HSP 1 Score: 76.3 bits (186), Expect = 1.520e-11 Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 49 KVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAELGKPHLDTGELIVSLVPWVSVTCFFRN--SPN---GYAYLVAAFTAALLLTGTA-TVLGEDGKGTALQRIENTIMGILVYLVI 477
KVS+A+++++L VLVP+ + F+ A W P+T+ FVM + V ++LR+ GTV G + G + L + E+ + LV + + FF + P+ GYA +VAAFTA +++ G T L D + AL RIE T +GIL++ I
Sbjct: 262 KVSIAIMLSSLLVLVPEWRKSFDNAFWGPLTIAFVMGKSVGASFVRSLLRMQGTVTGVILGYTLLRLSNGN----EIAILLV--LPIIVFFASLAKPSEQYGYAGVVAAFTAGIIVLGFEDTTL--DLEDYALARIELTAIGILIWFYI 402
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A4D9CPR0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPR0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.050e-10 Identity = 68/184 (36.96%), Postives = 97/184 (52.72%), Query Frame = 1
Query: 1 RGLERARPGRATAQQLKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAELGKPHLDTG-ELIVSLVPWVSVTCFFRNSP-NGYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEALGI 546
RGLE AR Q LKV+LA ++ L +L+ L P W + V ++ S + R+ GTVLG ++G V L D+ +++SL WV F R SP G L+AA TA ++L G +LGE G A+ RI+ TI+G +Y+ +D VF PVRAK L +L +LG+
Sbjct: 975 RGLEMAR------QPLKVALAYVLVTLTMLI--LTGPRTP--WGLIAVCQSLSSHPGSSFKAGLQRIQGTVLGGMFGIVV--LNWLQWDSKLAVVLSLTGWVFFCAFNRLSPLYGEVALMAAVTAPIILMGP--ILGEAG---AMIRIQQTILGSFIYVFVDNVFWPVRAKLDLRRELLTSLGL 1141
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: W7TR89_9STRA (p-hydroxybenzoic acid efflux pump subunit aaeb (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR89_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.390e-10 Identity = 67/184 (36.41%), Postives = 96/184 (52.17%), Query Frame = 1
Query: 1 RGLERARPGRATAQQLKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAELGKPHLDTG-ELIVSLVPWVSVTCFFRNSP-NGYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEALGI 546
R LE AR Q LKV+LA ++ L +L+ L P W + V ++ S + R+ GTVLG ++G V L D+ +++SL WV F R SP G L+AA TA ++L G +LGE G A+ RI+ TI+G +Y+ +D VF PVRAK L +L +LG+
Sbjct: 102 RALEMAR------QPLKVALAYVLVTLTMLI--LTGPRTP--WGLIAVCQSLSSHPGSSFKAGLQRIQGTVLGGMFGIVV--LNWLQWDSNLAVVLSLTGWVFFCAFNRLSPLYGEVALMAAVTAPIILMGP--ILGEAG---AMIRIQQTILGSFIYVFVDNVFWPVRAKLDLRRELLTSLGL 268
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Match: A0A835ZI34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI34_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.250e-9 Identity = 51/175 (29.14%), Postives = 77/175 (44.00%), Query Frame = 1
Query: 46 LKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFVMADDGASGVVTAVLRLLGTVLGTLYGTFVAELGKPHLDTGELIVSLVPWVSVTCFFRNSPNGYAYLVAAFTAALLLTGTATVLGEDGKGTALQRIENTIMGILVYLVIDTVFVPVRAKSVLVEQLHEALGIALQEVRHN 570
+KV+ L A+LF LVP+L +F P WV + ++A+D S V RLLG + +GYA +VAAFTA L++ G T + RI+NTI+G+++Y +D + P RA + L L LG+ +E H+
Sbjct: 487 VKVAGILTAASLFTLVPELSVKFYPGAWVAFSCGVILAEDTGSAVAMGSQRLLG---------------------------------------SPTHGYAAVVAAFTAVLIMVGIFTPAVHQAYSPVV-RIQNTIIGVVLYFALDNIIWPARAITALQRHLAGGLGVMRKEAVHS 621 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig85.20156.1 >prot_S-ischiensis_contig85.20156.1 ID=prot_S-ischiensis_contig85.20156.1|Name=mRNA_S-ischiensis_contig85.20156.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=336bp RGLERARPGRATAQQLKVSLALLVAALFVLVPDLEERFEPAVWVPVTVVFback to top mRNA from alignment at S-ischiensis_contig85:483207..487110- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig85.20156.1 ID=mRNA_S-ischiensis_contig85.20156.1|Name=mRNA_S-ischiensis_contig85.20156.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3904bp|location=Sequence derived from alignment at S-ischiensis_contig85:483207..487110- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig85:483207..487110- >mRNA_S-ischiensis_contig85.20156.1 ID=mRNA_S-ischiensis_contig85.20156.1|Name=mRNA_S-ischiensis_contig85.20156.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2016bp|location=Sequence derived from alignment at S-ischiensis_contig85:483207..487110- (Schizocladia ischiensis KU_0333)back to top |