mRNA_S-ischiensis_contig85.20152.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20152.1
Unique NamemRNA_S-ischiensis_contig85.20152.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:423148..428953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1711
Cds size939
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.9448926-UTR-S-ischiensis_contig85:423147..4232831622817339.9448926-UTR-S-ischiensis_contig85:423147..423283Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 423148..423283 +
1695741039.9757056-UTR-S-ischiensis_contig85:423147..4232831695741039.9757056-UTR-S-ischiensis_contig85:423147..423283Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 423148..423283 +
1622817339.9588554-UTR-S-ischiensis_contig85:424937..4249881622817339.9588554-UTR-S-ischiensis_contig85:424937..424988Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 424938..424988 +
1695741039.988119-UTR-S-ischiensis_contig85:424937..4249881695741039.988119-UTR-S-ischiensis_contig85:424937..424988Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 424938..424988 +
1622817340.016709-UTR-S-ischiensis_contig85:428368..4289531622817340.016709-UTR-S-ischiensis_contig85:428368..428953Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 428369..428953 +
1695741040.0442867-UTR-S-ischiensis_contig85:428368..4289531695741040.0442867-UTR-S-ischiensis_contig85:428368..428953Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 428369..428953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.9708765-CDS-S-ischiensis_contig85:424988..4250751622817339.9708765-CDS-S-ischiensis_contig85:424988..425075Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 424989..425075 +
1695741039.9986215-CDS-S-ischiensis_contig85:424988..4250751695741039.9986215-CDS-S-ischiensis_contig85:424988..425075Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 424989..425075 +
1622817339.981984-CDS-S-ischiensis_contig85:426062..4262341622817339.981984-CDS-S-ischiensis_contig85:426062..426234Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 426063..426234 +
1695741040.0088305-CDS-S-ischiensis_contig85:426062..4262341695741040.0088305-CDS-S-ischiensis_contig85:426062..426234Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 426063..426234 +
1622817339.994639-CDS-S-ischiensis_contig85:427367..4275891622817339.994639-CDS-S-ischiensis_contig85:427367..427589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 427368..427589 +
1695741040.0198793-CDS-S-ischiensis_contig85:427367..4275891695741040.0198793-CDS-S-ischiensis_contig85:427367..427589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 427368..427589 +
1622817340.005727-CDS-S-ischiensis_contig85:427910..4283681622817340.005727-CDS-S-ischiensis_contig85:427910..428368Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 427911..428368 +
1695741040.031071-CDS-S-ischiensis_contig85:427910..4283681695741040.031071-CDS-S-ischiensis_contig85:427910..428368Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 427911..428368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20152.1prot_S-ischiensis_contig85.20152.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 424989..428368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20152.1

>prot_S-ischiensis_contig85.20152.1 ID=prot_S-ischiensis_contig85.20152.1|Name=mRNA_S-ischiensis_contig85.20152.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=313bp
MPPHLAGRQWLFPRRRGHGTHTRGLEPEQGGGPHPEEADVQQQPPGVQGS
RAAAHATLQPQPGGAVLEVEQHHGPPPQRPPQQPKQGQAAAGGPAGEPGP
DPPRPLPEPAKPRLPVGPREAGPAQLPPKNRKAQALWAGRRPPGPAHAVL
QAGGGSRGQPGAGRQGPGPDRQLPGGPPGGPAAPGRRCPSGRRGGLRRWA
RGGGAVPHESAGHGAPLAAGDRGAGGGEPGRPGCCPAPGSRLAGVGLFPS
LLFGTSKYLEVLVRVHKFPLASYREGPLLRSLVTWSAPRPVLFLSILVVQ
CSVRSSRVLPST*
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mRNA from alignment at S-ischiensis_contig85:423148..428953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20152.1 ID=mRNA_S-ischiensis_contig85.20152.1|Name=mRNA_S-ischiensis_contig85.20152.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5806bp|location=Sequence derived from alignment at S-ischiensis_contig85:423148..428953+ (Schizocladia ischiensis KU_0333)
GCATCTCGGTGTCCGGGGCGGTGCAGTCGCTGTCGCTCAGAGGGAACCAC
CTGGGGGCGGAGGGCTGCTCCCGGGTGATGGAGGCGCTGTGCCGGTCCCC
GCCGCTGCTGAGCCTGGACGTCTCGGGGAATCCGCGGTGCGCCGCCGTCT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCCCCCCCCACCCCTCCCCCCCTCGCTCATCTCTCCCTCTCTC
TCCCTCCTTCTCTCTCTATTTTGAGCGGTAGATAAGCAGCGAGTTCCAGG
CCCAGTGCCAAAAGGCTCGTCCCAAAACAGGACTCAACGAAGCCCTTCTT
CCCCTCGCAGAACAATATATATATATCCTCTCTCTCTCTCTCAGCTATCT
CTGTCCTCTGGCCAATTGCCAGGCTTGGCCCCTCGTTGGCATGATCAGGT
AGAAGTTCATCAGTCTATGCGCCTTGCTTGCTTTCAAGAGTCAAGTACAT
ACATCTGTACATACTGTGCATACAATACAGTAGGCCGAGGGGCTACTGTA
CAAGCAGTGCTCGTACTATACAGTGCTACAGTAGTAGTTTCATCGCGTTG
CTGTACAGTATACCTACTCGAGTACCTACTTACTGCAATAACGCGCTTTC
TTTCCTCCCCCAAACGACAGTAGGTAGGTAGGTAGAAGAAAAACAAAGAC
AGGCGAGGGGCTGAGCGTGTTTCTAACACAAGGACCTCCAACAGCGGGCA
TTCCCTACTTGTAGCTCACCATAGTTGAATACTTCGAAGTACTTCGTACA
TGAAAACAAGCACCTACTATAGTTCAAGGTGCTACGGGTGTCGCCGGTCT
TTTTGTGCAGTACGAGGCACGAGGACTCTGGGAACAAGCACATGATGCCA
CAAGCTCCAGTAGCTGCGCGTCCTCACAGTTTCCACGTGCCCGACTGCTT
AGTAGTCATGGCCGTATCTTTATTTTATGTAGAGCACCCATGCAACAATT
CCCTATTTTAGTGGTAGATACGCACCAATTCCTTATCCGCCCCTAGCCAC
CCAGTCAGCCTCCACAACAACTGGGTCATCTACGCATGGAAAAGCAAGCA
AGTCATGAGTACGACAGTAGCACTGCCAAGCAACAACATACTTCCAAGGC
TTCGAAAATACTGTGGTACTTTGAAGTATGTACTTACGTGTACTCGAGTA
CAGGACTACTTCTAAGTGCTACTGAAGTGCACTGCACTACTGTACTTCGA
AGTACTGCACTTGCTGGCACACACCCTTGTAGTCTGCGCCTCCATGTGGA
CAACACCTGGTAAGCCACGTGATGCCTACTGAATAAAACGCTGCGAGTGC
ATTACAGTACAGTAGTACTTACATACTTAGAAGTATTGCCCCCCCGTGGT
GAGTATGTAATTTGAAGCACTACTAAGTACAGTAGTCTGTAGTACTGCTG
GGGTGCTGCTGTGTCGTACTCGTACGTACCCCCCTGGTGGTCTCCTCCCT
TCAGTGATGTTCTATCGATCAGTAGATAGTTATCGGGCCCGACTGGTTTT
ATGGGTGGCGTTACTGTACTAGCAACAGTACTTGGATTTAGTGTGGGTCA
AACTATCGAATATTGACTGCCGATAGATATATAGATCAGGCTTCGTTGAC
TCCTGTTTTGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCGCCGCTTA
TCTGCCACTCAAAAATACTTAGATCAGTCCTGACGATAGATAGGTTGATT
TGCTCAGATATTCCATCACTGCCTCCCTTGGCAATGGCAGGATCGGCGTC
CAGGGCGGCAAGGCACTGGCGGGGTTGCTGGAAATGGAAACATGCCTCCT
CACCTCGCTGGACGTCAGTGGCTGTTCCCTCGGCGACGAGGGCACGGCAC
CCATACTAGAGGCCTTGAGCCAGAGCAGGTCAGGGCTGGGCGGATGGATA
CTGTGTACTATACACTGTGCACTGCACAGTACAAATGCATGTGTGTACTA
CTGTATGAGTACTTCGAAGTACATGCTTGCTAGCTGTACGGAAGTTGTAC
ATGTATGTATAGCTCGTACTCGAGTACTTGGAAATGCACTATGCTGTACT
GTGCTGTGCTGTGCTGTGCTGTATTGGACTGTACTGTACTGTGCTGTACT
GAACTGTGCTGCACTGTACTGTGCTGTGCAGTACTGTGCAGTATTGTACT
GTGCCGTACTATGCTGTGCTGTGATGTACTGCGCTGTACGGTACTTTACT
GTGCTGTACAGTGTTGTGCTGTGCTGTGCTGCAGCGTACTGTACTGTACT
GTGCTGTACTGTACTGTGCTGTACTGTACTGAACTGAACTGTATTGTATT
GTACTGTACTGAACTGTATTGTACTGTACTGTACTGTGCTGTACTGTGCT
GTACTGTACTGTACTGTGCTGTACTGTACTTGAGCGCTTGGAAATGCTCT
AGAGCATGACACACGCCAAAGACAGCTGTCAGAACAGCTGTCAAAACAGT
TGTCAAAACAGGGATGCCAGCAGCTGTCCTGTTGCTACTTGCATACTGCA
CTTGGAAGCCCTAACAGAATAGCAGAAGTTAATAGCAACAGGGGTCAAGG
TGCAGGCCACTTCCCACTAGAGACTTCCACAGTGGTAAACGGCTTCCTTG
GCTCACCGGGGAAGGAGTGTACTTGGAAGTACTTGGAAGCAAGTACTACA
GCAGCGCTTGTACGATACAAGGACAAGAGCACGTGCTGCCCATCATCCAA
GCCCCTCACCAGGAAGTTTGCGTACTGAGTAAGTTGACAAGTGCTTTTGC
ACCTACTCTACCAAACGTCTGCGACCGTCGTGCTGTGAACCACGTCCTGA
CACCAGGGGTCAATCTCACACACGTACAATCGTACCTCGTTACACTTTAT
ATGAATGACCACCAGGGGGGCGGGCCACACCCTGAGGAGGCTGACGTGCA
ACAACAACCGCCTGGAGTGCAAGGGAGCAGAGCTGCAGCACATGCTACGC
TCCAACCTCAGCCTGGAGGCGCTGTCCTTGAGGTGGAACAACATCACGGG
CCACCGCCTCAACGGCCGCCACAGCAGCCCAAGCAGGGTGAGCCTGAGCA
CTGCCGAGTGCTTGGAAGTTCTTCGGAGTAGGTGCTTCGAAGTACTCATA
CTTGAAGGGCCACTGCTGAGGTCTCTAGTGACGTGGCCCGCACCTCGCCC
CGTGTTCTTCCTGTTAGTACTTGATTGCTTCCAACACCGGCAATGCTCGA
CCTCGTTGTGATTCATATAGGTTGTAACGAGGTACAATCGCACGTGTGTG
CGATTTACTGTTCCCATATTGCTGTAGTAGTTGTCTCATTTGTGAATTGA
GTGTTCATATATTTGTCATTAGCACATCAAGGTACGAAAAACAAGGAGGG
GGGGGGGGAAGGGGGGGGTCTTCCGAGTAGGCGCTTCGGAGTACGTGCTT
CGAAGTACTTGGTTCCTTCCAACACCTGCAATGCTCGACCTCGCGTGTTG
CTTACTAGAATGCTATGTACGAAGTACAGTCATGCACGCTGTTACCAAGT
ACCTCGAAGTACTTCATAGTAGCTAAGGGAGGCGTTTGCCATTGCTGAGG
TCTATAGTGATGTGGACCACGCCCAATATAGTCCTGTGTCGTTGTTATCA
GGTTACAGTCGGGGAAAATCGGCTAATGTTTCATTCCGAACAATGTTCAC
GTTGAATGACTCGCTTCAAATGATAGTTTTCCCGTGAGAAGTTCAACTCG
CCGACTTGATCACCTCGCGTTTTTTCTCTTCTGAGAGCTGAGGTCCCGAG
CTTTCATGTGACCCCTCCCTCAATCCAGATGAGAAATCGGGCATTTGCTC
GCCCAAAGTACGGAAGACCACAGGAACCACGAACTGTAGCGCCTACATAC
AGTGCTGTACCGTTTAGGCTGCGCTTCAAAGTACGCTTCAGTGCAGTACA
TTGTCAGGTACTTCCCAGCACGTTACTGCTGTAGTACTTCGAAGCACACC
ACAGCAACCACGCCGTACAACAAGCACTGCACGCTACTTTGTACGACCGC
CTGCTCAACTCTTGTTCAACCCTTGCTCAACTCTTGTTCAACCGCCGACC
CTGAACCCACGATGCCGCCGCCCTCGGTTCTTCAGCCACCGACCCTGAAC
CCACGCGGCCGAAACCGCCCCCAATTCCTCATCATCCGTTTGGCCTCCTC
GCCCCTGTCCCCCACCTTAGGCCAAGCTGCTGCTGGAGGCCCTGCAGGAG
AACCAGGGCCTGACCCACCTCGACCTCTCCCAGAACCTGCTAAACCAAGA
CTGCCTGTCGGCCCTCGTGAAGCTGGTCCAGCTCAACTCCCACCTAAAAA
CCGCAAAGCTCAGGCACTGTGGGCTGGGCGCCGCCCGCCCGGGCCTGCAC
ACGCTGTGCTGCAAGCTGGCGGCGGCAGTAGAGGCCAACCAGGTAGCTAA
CCATGGTGCAAAAGTGCGATTTTTGTTTTGCCCAAATAGTTTTTGGCGCG
AAGATAAAAAGCGAGTGGGAAAGAGGAGGTGTTCCTACTTACGCGAGTTC
AGCCCCCCCGGAAGCCCGTCTTTTCACTCGCCTTCACTCGCAGGGCATAC
AGAGCAGAAAAACAAAGAAAACCAAAAGGAAGAGGGCGGGCAGGAATAAC
AGTGGAAGAGGGGTCTCTTGTGCCAAATAGTTTTTGGCGATGTTGTCGAA
AATTTTGTCTCAAATTGCTATTTTTTTACCGTTGTTGCACTTTTGTACCA
TGTTTACAACCAGGCGCTGGCCGACAAGGGCCTGGACCTGACAGGCAACT
CCCTGGAGGCCCTCCAGGAGGGCCAGCTGCTCCGGGACGCCGGTGTCCTT
CTGGCCGACGCGGGGGGCTGCGGCGTTGGGCCCGGGGCGGGGGCGCCGTC
CCCCACGAGTCGGCCGGCCACGGTGCACCCCTCGCTGCCGGAGATCGTGG
GGCTGGCGGCGGCGAGCCTGGCCGCCCAGGCTGCTGCCCAGCCCCAGGCA
GCCGCTTAGCCGGCGTCGGACTTTTCCCCAGCCTCTTGTTTGGTACTTCG
AAGTACTTGGAAGTACTGGTACGAGTACACAAATTTCCCCTGGCGAGCTA
TAGGGAAGGGCCACTGCTGAGGTCTCTAGTGACGTGGTCCGCACCTCGCC
CCGTGCTGTTCCTGTCAATACTGGTAGTACAGTGCAGTGTAAGGAGTAGC
AGAGTACTTCCAAGTACGTGACTGGTGCACCTACATCACAGTTGTGCCGC
TGGGCTTTTGACCACGCAATGTCAATGGATGGTAGCCAGCATGTATGGAC
CACAGTCAAGTTAGCTGACGTGGTCTTGGTTTGATGCAGTGGGGGCCCAC
CCTCTTCGTCGTTTGTTGCCCGTTCCCCCCCCCCCCCCGCACCCTACTAC
CCATTCCTGAGTTCTCGCTCTGGTACTTCCAAGCGCTGCAGTGCCTAATA
CTTCCAAGTACTACTATACTTGGACGTACATACTACAGTACGTACTTCGA
AGTACAATGGTTAGCAGTTGCCCGTGCCACGCGGCGCACTGCTATGGCAA
GTAAAGCCTGAGCGAGTCGCCCTCATATTGTACGATGTACTTGGAACTAG
TAGAGTACATGGTGTATGACAAGATGGACTCGGACCTAAGTACAGAACAG
ACTCTCCAAGTACTTTACAGGCACTTTCAGCACTTAGGACAAGGTGGACT
CGAACTACCTACAGTACAGAACTCAGGCTCTCCAAGTACTTTCTGCCCCC
CCCCCCCTTGTTCTTAGTTCCTTGCTATAATAATCACTAATATAGGATCA
CTCAAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:423148..428953+

>mRNA_S-ischiensis_contig85.20152.1 ID=mRNA_S-ischiensis_contig85.20152.1|Name=mRNA_S-ischiensis_contig85.20152.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1878bp|location=Sequence derived from alignment at S-ischiensis_contig85:423148..428953+ (Schizocladia ischiensis KU_0333)
ATGCCTCCTCACCTCGCTGGACGTCAGTGGCTGTTCCCTCGGCGACGAGG
GCACGGCACCCATACTAGAGGCCTTGAGCCAGAGCAGATGCCTCCTCACC
TCGCTGGACGTCAGTGGCTGTTCCCTCGGCGACGAGGGCACGGCACCCAT
ACTAGAGGCCTTGAGCCAGAGCAGGGGGGCGGGCCACACCCTGAGGAGGC
TGACGTGCAACAACAACCGCCTGGAGTGCAAGGGAGCAGAGCTGCAGCAC
ATGCTACGCTCCAACCTCAGCCTGGAGGCGCTGTCCTTGAGGTGGAACAA
CATCACGGGCCACCGCCTCAACGGCCGCCACAGCAGCCCAAGCAGGGGGG
GCGGGCCACACCCTGAGGAGGCTGACGTGCAACAACAACCGCCTGGAGTG
CAAGGGAGCAGAGCTGCAGCACATGCTACGCTCCAACCTCAGCCTGGAGG
CGCTGTCCTTGAGGTGGAACAACATCACGGGCCACCGCCTCAACGGCCGC
CACAGCAGCCCAAGCAGGGCCAAGCTGCTGCTGGAGGCCCTGCAGGAGAA
CCAGGGCCTGACCCACCTCGACCTCTCCCAGAACCTGCTAAACCAAGACT
GCCTGTCGGCCCTCGTGAAGCTGGTCCAGCTCAACTCCCACCTAAAAACC
GCAAAGCTCAGGCACTGTGGGCTGGGCGCCGCCCGCCCGGGCCTGCACAC
GCTGTGCTGCAAGCTGGCGGCGGCAGTAGAGGCCAACCAGGCCAAGCTGC
TGCTGGAGGCCCTGCAGGAGAACCAGGGCCTGACCCACCTCGACCTCTCC
CAGAACCTGCTAAACCAAGACTGCCTGTCGGCCCTCGTGAAGCTGGTCCA
GCTCAACTCCCACCTAAAAACCGCAAAGCTCAGGCACTGTGGGCTGGGCG
CCGCCCGCCCGGGCCTGCACACGCTGTGCTGCAAGCTGGCGGCGGCAGTA
GAGGCCAACCAGGCGCTGGCCGACAAGGGCCTGGACCTGACAGGCAACTC
CCTGGAGGCCCTCCAGGAGGGCCAGCTGCTCCGGGACGCCGGTGTCCTTC
TGGCCGACGCGGGGGGCTGCGGCGTTGGGCCCGGGGCGGGGGCGCCGTCC
CCCACGAGTCGGCCGGCCACGGTGCACCCCTCGCTGCCGGAGATCGTGGG
GCTGGCGGCGGCGAGCCTGGCCGCCCAGGCTGCTGCCCAGCCCCAGGCAG
CCGCTTAGCCGGCGTCGGACTTTTCCCCAGCCTCTTGTTTGGTACTTCGA
AGTACTTGGAAGTACTGGTACGAGTACACAAATTTCCCCTGGCGAGCTAT
AGGGAAGGGCCACTGCTGAGGTCTCTAGTGACGTGGTCCGCACCTCGCCC
CGTGCTGTTCCTGTCAATACTGGTAGTACAGTGCAGTGTAAGGAGTAGCA
GAGTACTTCCAAGTACGTGAGCGCTGGCCGACAAGGGCCTGGACCTGACA
GGCAACTCCCTGGAGGCCCTCCAGGAGGGCCAGCTGCTCCGGGACGCCGG
TGTCCTTCTGGCCGACGCGGGGGGCTGCGGCGTTGGGCCCGGGGCGGGGG
CGCCGTCCCCCACGAGTCGGCCGGCCACGGTGCACCCCTCGCTGCCGGAG
ATCGTGGGGCTGGCGGCGGCGAGCCTGGCCGCCCAGGCTGCTGCCCAGCC
CCAGGCAGCCGCTTAGCCGGCGTCGGACTTTTCCCCAGCCTCTTGTTTGG
TACTTCGAAGTACTTGGAAGTACTGGTACGAGTACACAAATTTCCCCTGG
CGAGCTATAGGGAAGGGCCACTGCTGAGGTCTCTAGTGACGTGGTCCGCA
CCTCGCCCCGTGCTGTTCCTGTCAATACTGGTAGTACAGTGCAGTGTAAG
GAGTAGCAGAGTACTTCCAAGTACGTGA
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