mRNA_S-ischiensis_contig85.20148.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20148.1
Unique NamemRNA_S-ischiensis_contig85.20148.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A022Q440_ERYGU (AP2/ERF domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q440_ERYGU)

HSP 1 Score: 70.1 bits (170), Expect = 7.200e-11
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  265 RVRKAQYRGVRPRAKGMWQAQIT--SKGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAEERPAA 465
            R RK QYRG+R R  G W A+I   SKG  V LGTF+   EAA AYDT ARR+ GS A++NF EE PAA
Sbjct:  115 RKRKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFNTAEEAARAYDTEARRIRGSKAKVNFPEEAPAA 183          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: UPI00053CAA6C (ethylene-responsive transcription factor RAP2-3 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CAA6C)

HSP 1 Score: 65.9 bits (159), Expect = 7.020e-10
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  265 RVRKAQYRGVRPRAKGMWQAQITS--KGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAEERPA 462
            R RK  YRG+R R  G W A+I    KG  V LGTF+   EAA+AYD+AA+R+ G  A+LNFA E PA
Sbjct:   75 RTRKNMYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDSAAKRIRGDKAKLNFAAEPPA 142          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A2K3CQW4_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQW4_CHLRE)

HSP 1 Score: 66.6 bits (161), Expect = 1.680e-9
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  277 AQYRGVR-PRAKGMWQAQITSKGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAEERPAAEPP 474
            + YRGV   + KG W A+I   G  V LG FDN+ EAA AYD AARRLHG+AA+LNF  E PAA+ P
Sbjct:  104 SSYRGVTWHKGKGKWMAKIRDAGKTVHLGYFDNQEEAARAYDAAARRLHGAAAKLNFPVE-PAADGP 169          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A5A7R8G7_STRAF (Integrase-type DNA-binding superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R8G7_STRAF)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-9
Identity = 44/89 (49.44%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  244 CVMADGGRVRK-AQYRGVRPRAKGMWQAQITS--KGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAEERPAAEPPQRPSAAPAA 501
            C+   GG       YRGVR R  G W A+I    +G  V LGTF+   EAA AYD AARRL+G AA+LN  EE  A E P    A PAA
Sbjct:   24 CMRGKGGPDNALCTYRGVRQRTWGRWVAEIREPKRGSRVWLGTFNTSLEAARAYDDAARRLYGDAAKLNLPEEGGAHEVPVAEDAPPAA 112          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A8B8K4T9_ABRPR (ethylene-responsive transcription factor RAP2-3-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8K4T9_ABRPR)

HSP 1 Score: 63.9 bits (154), Expect = 4.490e-9
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  253 ADGGRVRKAQYRGVRPRAKGMWQAQITS--KGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNF 444
            +DG R RK  YRG+R R  G W A+I    KG  V LGTF    EAA AYDTAA+R+ G  A+LNF
Sbjct:   65 SDGKRTRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDTAAKRIRGDKAKLNF 130          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A6I9TF88_SESIN (ethylene-responsive transcription factor RAP2-12-like n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TF88_SESIN)

HSP 1 Score: 64.3 bits (155), Expect = 7.840e-9
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  265 RVRKAQYRGVRPRAKGMWQAQITS--KGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAEERP 459
            R RK QYRG+R R  G W A+I    KG  V LGTF+   EAA AYDTAAR++ G  A++NF E+ P
Sbjct:  114 RKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAKAYDTAARKIRGKKAKVNFPEDAP 180          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A5J9SLJ7_9POAL (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9SLJ7_9POAL)

HSP 1 Score: 63.5 bits (153), Expect = 1.020e-8
Identity = 56/150 (37.33%), Postives = 67/150 (44.67%), Query Frame = 1
Query:   73 LLPRVSNSVAVPSSAVFHGSGRPKSMHGFHRALGF----LAARAPAAAPRRPA---WLQTRSHLCVMADGGRVRKAQ-----------------YRGVRPRAKGMWQAQITSKGGLVKL--GTFDNEAEAALAYDTAARRLHGSAARLNF 444
            L P + ++   P+S + H      S   FH A G+     AA A  A    PA   ++Q R HL   A      +AQ                 YRGVR R  G W A+I       +L  GTFD   EAALAYD AA RL G AARLNF
Sbjct:   16 LEPFIRDASTPPTSFLPHQLAGTTSPFAFHHAAGYRGYPYAAGAEGAGQLSPAEIQYIQARLHLQRQAQSVLGARAQPMKASAASATPPRPQKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDQAAYRLRGDAARLNF 165          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: V7B3A9_PHAVU (AP2/ERF domain-containing protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7B3A9_PHAVU)

HSP 1 Score: 62.8 bits (151), Expect = 1.260e-8
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  265 RVRKAQYRGVRPRAKGMWQAQITS--KGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAEERPAAEPP 474
            R RK  YRG+R R  G W A+I    KG  V LGTF    EAA AYDTAA+R+ G  A+LNF    PAA PP
Sbjct:   87 RARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFSTAEEAARAYDTAAKRIRGDKAKLNF----PAATPP 154          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A6A4LRM7_9ERIC (AP2/ERF domain-containing protein (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4LRM7_9ERIC)

HSP 1 Score: 62.0 bits (149), Expect = 1.470e-8
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  244 CVMADGGRVRKA-QYRGVRPRAKGMWQAQIT--SKGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAE 450
            C+   GG    +  Y+GVR R  G W A+I   ++G  + LGTFD   EAA AYD AAR+LHGS A+LNF E
Sbjct:   27 CMRGKGGPENASCTYKGVRQRTWGKWVAEIRELNRGARLWLGTFDTSWEAARAYDAAARKLHGSHAKLNFPE 98          
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Match: A0A843U5H5_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U5H5_COLES)

HSP 1 Score: 63.2 bits (152), Expect = 1.950e-8
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  241 LCVMADGGR-VRKAQYRGVRPRAKGMWQAQITSKGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNF 444
            LC  A+ GR +  +QY+GV P+  G W AQI  K   V LGTF+ EAEAA AYD AA+R  G  A  NF
Sbjct:   53 LCTEAESGRKLPSSQYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEAEAARAYDVAAQRFRGRDAVTNF 121          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022Q440_ERYGU7.200e-1159.42AP2/ERF domain-containing protein n=1 Tax=Erythran... [more]
UPI00053CAA6C7.020e-1054.41ethylene-responsive transcription factor RAP2-3 is... [more]
A0A2K3CQW4_CHLRE1.680e-958.21Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A5A7R8G7_STRAF2.610e-949.44Integrase-type DNA-binding superfamily protein n=1... [more]
A0A8B8K4T9_ABRPR4.490e-954.55ethylene-responsive transcription factor RAP2-3-li... [more]
A0A6I9TF88_SESIN7.840e-953.73ethylene-responsive transcription factor RAP2-12-l... [more]
A0A5J9SLJ7_9POAL1.020e-837.33AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
V7B3A9_PHAVU1.260e-854.17AP2/ERF domain-containing protein n=1 Tax=Phaseolu... [more]
A0A6A4LRM7_9ERIC1.470e-850.00AP2/ERF domain-containing protein (Fragment) n=2 T... [more]
A0A843U5H5_COLES1.950e-852.17Uncharacterized protein n=1 Tax=Colocasia esculent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:392517..393070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog50452.A0A087H9I1
KEGG koko:K09286
GOsGO:0001666,GO:0003032,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0009593,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0036293,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044424,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0051606,GO:0060255,GO:0065007,GO:0070482,GO:0070483,GO:0071944,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000026,GO:2000112,GO:2000280,GO:2001141
EggNOG free text desc.transcription factor
EggNOG OGs28NGJ@1,2QV26@2759,37PB2@33090,3G8QC@35493,3HXB7@3699
COG Functional cat.K
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categorysignal peptide
Exons1
Model size554
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.6278791-CDS-S-ischiensis_contig85:392518..3930701622817342.6278791-CDS-S-ischiensis_contig85:392518..393070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 392519..393070 -
1695741041.9120011-CDS-S-ischiensis_contig85:392518..3930701695741041.9120011-CDS-S-ischiensis_contig85:392518..393070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 392519..393070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20148.1prot_S-ischiensis_contig85.20148.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 392519..393070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20148.1

>prot_S-ischiensis_contig85.20148.1 ID=prot_S-ischiensis_contig85.20148.1|Name=mRNA_S-ischiensis_contig85.20148.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
HGPWRRWRGRGRMCPLKSAIVLWCLLPRVSNSVAVPSSAVFHGSGRPKSM
HGFHRALGFLAARAPAAAPRRPAWLQTRSHLCVMADGGRVRKAQYRGVRP
RAKGMWQAQITSKGGLVKLGTFDNEAEAALAYDTAARRLHGSAARLNFAE
ERPAAEPPQRPSAAPAAGGQASRTMADPPTPAGA
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mRNA from alignment at S-ischiensis_contig85:392517..393070-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20148.1 ID=mRNA_S-ischiensis_contig85.20148.1|Name=mRNA_S-ischiensis_contig85.20148.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=554bp|location=Sequence derived from alignment at S-ischiensis_contig85:392517..393070- (Schizocladia ischiensis KU_0333)
CACGGCCCGTGGCGACGCTGGCGTGGGCGGGGGCGCATGTGCCCCCTGAA GAGCGCCATTGTACTGTGGTGCCTTCTACCTCGGGTGTCCAATTCCGTGG CGGTACCCTCGAGCGCCGTCTTCCATGGCTCCGGGCGCCCAAAGAGCATG CACGGCTTTCACAGGGCCTTGGGGTTCCTGGCGGCACGTGCTCCGGCCGC GGCCCCCAGACGGCCAGCTTGGCTCCAGACCAGGTCCCACTTATGCGTCA TGGCGGACGGGGGCAGGGTGAGGAAGGCTCAGTACCGCGGGGTACGACCG CGCGCCAAGGGCATGTGGCAGGCCCAGATCACCTCCAAGGGAGGGCTCGT CAAGCTCGGCACCTTCGACAACGAGGCCGAGGCGGCCCTGGCGTACGACA CGGCCGCCCGCAGGCTTCACGGCTCTGCCGCCCGGCTAAATTTCGCCGAG GAAAGGCCGGCCGCGGAACCGCCGCAGCGCCCGAGTGCCGCTCCTGCTGC TGGCGGCCAAGCTAGCAGGACCATGGCGGACCCACCGACACCAGCAGGGG CGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:392517..393070-

>mRNA_S-ischiensis_contig85.20148.1 ID=mRNA_S-ischiensis_contig85.20148.1|Name=mRNA_S-ischiensis_contig85.20148.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig85:392517..393070- (Schizocladia ischiensis KU_0333)
CACGGCCCGTGGCGACGCTGGCGTGGGCGGGGGCGCATGTGCCCCCTGAA
GAGCGCCATTGTACTGTGGTGCCTTCTACCTCGGGTGTCCAATTCCGTGG
CGGTACCCTCGAGCGCCGTCTTCCATGGCTCCGGGCGCCCAAAGAGCATG
CACGGCTTTCACAGGGCCTTGGGGTTCCTGGCGGCACGTGCTCCGGCCGC
GGCCCCCAGACGGCCAGCTTGGCTCCAGACCAGGTCCCACTTATGCGTCA
TGGCGGACGGGGGCAGGGTGAGGAAGGCTCAGTACCGCGGGGTACGACCG
CGCGCCAAGGGCATGTGGCAGGCCCAGATCACCTCCAAGGGAGGGCTCGT
CAAGCTCGGCACCTTCGACAACGAGGCCGAGGCGGCCCTGGCGTACGACA
CGGCCGCCCGCAGGCTTCACGGCTCTGCCGCCCGGCTAAATTTCGCCGAG
GAAAGGCCGGCCGCGGAACCGCCGCAGCGCCCGAGTGCCGCTCCTGCTGC
TGGCGGCCAAGCTAGCAGGACCATGGCGGACCCACCGACACCAGCAGGGG
CGCACGGCCCGTGGCGACGCTGGCGTGGGCGGGGGCGCATGTGCCCCCTG
AAGAGCGCCATTGTACTGTGGTGCCTTCTACCTCGGGTGTCCAATTCCGT
GGCGGTACCCTCGAGCGCCGTCTTCCATGGCTCCGGGCGCCCAAAGAGCA
TGCACGGCTTTCACAGGGCCTTGGGGTTCCTGGCGGCACGTGCTCCGGCC
GCGGCCCCCAGACGGCCAGCTTGGCTCCAGACCAGGTCCCACTTATGCGT
CATGGCGGACGGGGGCAGGGTGAGGAAGGCTCAGTACCGCGGGGTACGAC
CGCGCGCCAAGGGCATGTGGCAGGCCCAGATCACCTCCAAGGGAGGGCTC
GTCAAGCTCGGCACCTTCGACAACGAGGCCGAGGCGGCCCTGGCGTACGA
CACGGCCGCCCGCAGGCTTCACGGCTCTGCCGCCCGGCTAAATTTCGCCG
AGGAAAGGCCGGCCGCGGAACCGCCGCAGCGCCCGAGTGCCGCTCCTGCT
GCTGGCGGCCAAGCTAGCAGGACCATGGCGGACCCACCGACACCAGCAGG
GGCG
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