mRNA_S-ischiensis_contig85.20140.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20140.1
Unique NamemRNA_S-ischiensis_contig85.20140.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20140.1 vs. uniprot
Match: A0A6H5JFF7_9PHAE (DUF4209 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.640e-9
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   13 QANCLVKVLGPGVVACLTDLFMQDAGPGLRAKVAHGQVSLSDMFR 147
            + N L+  LGPG+ ACL DLFM  AGP LR KVAHG++ +S +FR
Sbjct:  516 RPNLLLSALGPGMSACLLDLFMMSAGPNLRGKVAHGEIDVSRVFR 560
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BLAST of mRNA_S-ischiensis_contig85.20140.1 vs. uniprot
Match: D7FQF8_ECTSI (DUF4209 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF8_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 9.210e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   13 QANCLVKVLGPGVVACLTDLFMQDAGPGLRAKVAHGQVSLSDMF 144
            + N L+  LGPG+ ACL DLFM  AGP LR KVAHG+V +S +F
Sbjct:  517 RPNLLLSALGPGMSACLLDLFMMSAGPNLRGKVAHGEVDVSRVF 560
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFF7_9PHAE2.640e-957.78DUF4209 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FQF8_ECTSI9.210e-959.09DUF4209 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:311268..311476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size209
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.2351892-CDS-S-ischiensis_contig85:311267..3114741622817342.2351892-CDS-S-ischiensis_contig85:311267..311474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 311268..311474 +
1695741041.6232336-CDS-S-ischiensis_contig85:311267..3114741695741041.6232336-CDS-S-ischiensis_contig85:311267..311474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 311268..311474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20140.1prot_S-ischiensis_contig85.20140.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 311268..311474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20140.1

>prot_S-ischiensis_contig85.20140.1 ID=prot_S-ischiensis_contig85.20140.1|Name=mRNA_S-ischiensis_contig85.20140.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=69bp
CEVTQANCLVKVLGPGVVACLTDLFMQDAGPGLRAKVAHGQVSLSDMFRS
VAVNDKEEACRHNNQGGRA
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mRNA from alignment at S-ischiensis_contig85:311268..311476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20140.1 ID=mRNA_S-ischiensis_contig85.20140.1|Name=mRNA_S-ischiensis_contig85.20140.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=209bp|location=Sequence derived from alignment at S-ischiensis_contig85:311268..311476+ (Schizocladia ischiensis KU_0333)
TGTGAGGTGACTCAAGCCAACTGCCTCGTCAAGGTCCTCGGACCCGGCGT
AGTGGCATGCCTGACAGACCTCTTCATGCAGGATGCCGGGCCGGGGCTGC
GGGCCAAGGTTGCGCACGGCCAGGTGTCCCTGTCGGATATGTTTCGGTCT
GTTGCTGTTAACGACAAAGAAGAGGCATGCAGACACAACAACCAAGGAGG
AAGGGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:311268..311476+

>mRNA_S-ischiensis_contig85.20140.1 ID=mRNA_S-ischiensis_contig85.20140.1|Name=mRNA_S-ischiensis_contig85.20140.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=414bp|location=Sequence derived from alignment at S-ischiensis_contig85:311268..311476+ (Schizocladia ischiensis KU_0333)
TGTGAGGTGACTCAAGCCAACTGCCTCGTCAAGGTCCTCGGACCCGGCGT
AGTGGCATGCCTGACAGACCTCTTCATGCAGGATGCCGGGCCGGGGCTGC
GGGCCAAGGTTGCGCACGGCCAGGTGTCCCTGTCGGATATGTTTCGGTCT
GTTGCTGTTAACGACAAAGAAGAGGCATGCAGACACAACAACCAAGGAGG
AAGGGCATGTGAGGTGACTCAAGCCAACTGCCTCGTCAAGGTCCTCGGAC
CCGGCGTAGTGGCATGCCTGACAGACCTCTTCATGCAGGATGCCGGGCCG
GGGCTGCGGGCCAAGGTTGCGCACGGCCAGGTGTCCCTGTCGGATATGTT
TCGGTCTGTTGCTGTTAACGACAAAGAAGAGGCATGCAGACACAACAACC
AAGGAGGAAGGGCA
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