mRNA_S-ischiensis_contig85.20138.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20138.1
Unique NamemRNA_S-ischiensis_contig85.20138.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:284851..285369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.4170322-CDS-S-ischiensis_contig85:284850..2853691622817340.4170322-CDS-S-ischiensis_contig85:284850..285369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 284851..285369 +
1695741040.2276058-CDS-S-ischiensis_contig85:284850..2853691695741040.2276058-CDS-S-ischiensis_contig85:284850..285369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 284851..285369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20138.1prot_S-ischiensis_contig85.20138.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 284851..285369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20138.1

>prot_S-ischiensis_contig85.20138.1 ID=prot_S-ischiensis_contig85.20138.1|Name=mRNA_S-ischiensis_contig85.20138.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
CDPYTKGVALHLTGVCPSHKTCRVYPAGRSFVGGPLYCHLFTCISRHCHT
VTPSSRTGILCPCCCSYRFFLYRAAAKTTAACSASSSPLKSSTGTRSTTQ
RCTTLAPGQTTIPARSTGFFPAPGPPAPQASYIPLPPLPDKRQQLFRNTL
AAKSRDARERPSAARMCRPLRV*
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mRNA from alignment at S-ischiensis_contig85:284851..285369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20138.1 ID=mRNA_S-ischiensis_contig85.20138.1|Name=mRNA_S-ischiensis_contig85.20138.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=519bp|location=Sequence derived from alignment at S-ischiensis_contig85:284851..285369+ (Schizocladia ischiensis KU_0333)
TGCGACCCCTACACGAAAGGAGTCGCACTCCACCTCACCGGCGTTTGCCC
CTCCCATAAAACGTGCCGCGTATACCCCGCCGGGCGGTCGTTCGTTGGGG
GGCCCCTGTACTGTCACTTGTTTACTTGCATATCTCGTCACTGCCACACT
GTCACACCCTCAAGCCGCACCGGTATTCTGTGCCCGTGTTGTTGTTCTTA
CCGCTTCTTCCTTTATAGGGCCGCGGCCAAGACCACTGCCGCATGTTCAG
CATCGTCGTCTCCCCTAAAGAGCTCGACCGGTACAAGATCCACTACGCAG
CGCTGTACGACGCTGGCTCCTGGGCAGACGACAATACCCGCCCGCAGCAC
CGGATTCTTCCCCGCTCCCGGCCCCCCAGCACCGCAAGCCTCGTACATCC
CGCTACCGCCCCTTCCGGACAAGCGGCAACAACTCTTCAGGAACACGCTC
GCAGCCAAGTCAAGAGACGCGCGCGAACGTCCGTCTGCAGCCCGCATGTG
CCGGCCACTACGAGTGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:284851..285369+

>mRNA_S-ischiensis_contig85.20138.1 ID=mRNA_S-ischiensis_contig85.20138.1|Name=mRNA_S-ischiensis_contig85.20138.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig85:284851..285369+ (Schizocladia ischiensis KU_0333)
TGCGACCCCTACACGAAAGGAGTCGCACTCCACCTCACCGGCGTTTGCCC
CTCCCATAAAACGTGCCGCGTATACCCCGCCGGGCGGTCGTTCGTTGGGG
GGCCCCTGTACTGTCACTTGTTTACTTGCATATCTCGTCACTGCCACACT
GTCACACCCTCAAGCCGCACCGGTATTCTGTGCCCGTGTTGTTGTTCTTA
CCGCTTCTTCCTTTATAGGGCCGCGGCCAAGACCACTGCCGCATGTTCAG
CATCGTCGTCTCCCCTAAAGAGCTCGACCGGTACAAGATCCACTACGCAG
CGCTGTACGACGCTGGCTCCTGGGCAGACGACAATACCCGCCCGCAGCAC
CGGATTCTTCCCCGCTCCCGGCCCCCCAGCACCGCAAGCCTCGTACATCC
CGCTACCGCCCCTTCCGGACAAGCGGCAACAACTCTTCAGGAACACGCTC
GCAGCCAAGTCAAGAGACGCGCGCGAACGTCCGTCTGCAGCCCGCATGTG
CCGGCCACTACGAGTGTGATGCGACCCCTACACGAAAGGAGTCGCACTCC
ACCTCACCGGCGTTTGCCCCTCCCATAAAACGTGCCGCGTATACCCCGCC
GGGCGGTCGTTCGTTGGGGGGCCCCTGTACTGTCACTTGTTTACTTGCAT
ATCTCGTCACTGCCACACTGTCACACCCTCAAGCCGCACCGGTATTCTGT
GCCCGTGTTGTTGTTCTTACCGCTTCTTCCTTTATAGGGCCGCGGCCAAG
ACCACTGCCGCATGTTCAGCATCGTCGTCTCCCCTAAAGAGCTCGACCGG
TACAAGATCCACTACGCAGCGCTGTACGACGCTGGCTCCTGGGCAGACGA
CAATACCCGCCCGCAGCACCGGATTCTTCCCCGCTCCCGGCCCCCCAGCA
CCGCAAGCCTCGTACATCCCGCTACCGCCCCTTCCGGACAAGCGGCAACA
ACTCTTCAGGAACACGCTCGCAGCCAAGTCAAGAGACGCGCGCGAACGTC
CGTCTGCAGCCCGCATGTGCCGGCCACTACGAGTGTGA
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