mRNA_S-ischiensis_contig85.20137.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20137.1
Unique NamemRNA_S-ischiensis_contig85.20137.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: UPI00143D8387 (secreted RxLR effector protein 161-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D8387)

HSP 1 Score: 62.0 bits (149), Expect = 8.680e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  224 QEAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVV 409
            QE  + R LL  ++  QQGP V+YEDN++ + L     FS RTKHI+T++HY+  L ++G++
Sbjct:  122 QEGVWVRRLLEDMKQKQQGPTVVYEDNQSCLQLICNKKFSHRTKHIDTKYHYIKDLKDQGIM 183          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: UPI001ED8A2C8 (secreted RxLR effector protein 161-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A2C8)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-8
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  212 AGRSQEAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSV 415
            A  SQE  + R LL  +  VQ  PI++YEDN+  I +A    FSARTKHI+ R H++  L++  V+ +
Sbjct:  149 ASASQEGVWLRQLLHDLGEVQNEPIIIYEDNQGCIKIASNEKFSARTKHIDVRHHFIRDLMKNNVIQL 216          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: A0A6G1EJC3_9ORYZ (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EJC3_9ORYZ)

HSP 1 Score: 60.5 bits (145), Expect = 6.530e-8
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  227 EAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSVQKIAMEESGRRP 451
            +A + RSLL  +   Q  P+ ++ DN++AI+L    +F  R+KHI+TRFH++ + VE G + V+ + MEE    P
Sbjct:  218 QALWLRSLLAELNKEQPRPVKVFVDNKSAIALMKNPVFHGRSKHIDTRFHFIRECVEGGQIVVKFMRMEEQRADP 292          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: A0A4S4M556_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M556_9APHY)

HSP 1 Score: 60.5 bits (145), Expect = 8.920e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 2
Query:  224 QEAAYPRSLLLSIE-HVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSV 415
            +E  Y RSL+L +       PI LY DN++AI +A+ G+  ARTKHI+ R+ Y+ Q+VERG+  +
Sbjct:  781 RELVYLRSLVLELTGETTSSPITLYCDNQSAIKIALNGLLHARTKHIDIRYQYIRQVVERGLTEL 845          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: UPI0019297FE2 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019297FE2)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-7
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  227 EAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSVQKIAMEE 436
            EA + R LL  +   Q  P ++  DN+AAIS+A   +   RTKHI+TR+H++C+L++ G++ +      E
Sbjct:  325 EAIWLRGLLEDLNEAQGSPSIIRCDNKAAISIARNPVMHGRTKHIDTRYHFICELMKDGLIDITHCGTNE 394          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: J6FCP9_TRIAS (Integrase catalytic domain-containing protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6FCP9_TRIAS)

HSP 1 Score: 59.7 bits (143), Expect = 1.740e-7
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  221 SQEAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSVQKI 424
            ++E  + RSLLL +   Q G  +LY DN AA+ LA   +   R+K I+ RFHY+ +LVERGV+ ++ I
Sbjct: 1615 AREVVWLRSLLLELGFEQVGSTLLYGDNRAALVLAENPVAHTRSKQIDIRFHYLRELVERGVIQLEYI 1682          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: A0A803LCB7_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCB7_CHEQI)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-7
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  227 EAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVS 412
            EA + R+LL    HVQ+GP  +Y DN +AI LA   +   R+KHI+TRFH++   V++G ++
Sbjct:  159 EALWLRNLLKETGHVQEGPTTIYVDNMSAIKLAKNPVQHGRSKHIDTRFHFLRDQVKQGTIT 220          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: H3G7Q7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Q7_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 1.900e-7
Identity = 24/63 (38.10%), Postives = 42/63 (66.67%), Query Frame = 2
Query:  221 SQEAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVV 409
            +QE  + R LL  + +  QG  ++Y+DN+  I+LA   ++ ARTKHI+ +FH++ + +ER V+
Sbjct:   11 TQETVWLRLLLKDMGYEDQGATLIYQDNQGCIALAKNPMYHARTKHIDIKFHFLREKIERAVI 73          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: UPI0007EF63DB (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF63DB)

HSP 1 Score: 58.9 bits (141), Expect = 2.110e-7
Identity = 26/64 (40.62%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  242 RSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSVQKIAME 433
            R++L  I   + GP+VLY DN +AI LA   +F  R+KHI+ R+H++ + VERG + ++ ++ E
Sbjct:  203 RNVLNQISDEEIGPVVLYIDNRSAIDLAKNPVFHGRSKHIDIRYHFIRECVERGEIVLKHVSSE 266          
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Match: UPI0007F02BA2 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F02BA2)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-7
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 2
Query:  278 GPIVLYEDNEAAISLAVKGIFSARTKHIETRFHYVCQLVERGVVSVQKIAMEE 436
            GP+VLY DN +AI LA   +F  R+KHI+ RFH++ + VE+G V ++ I  EE
Sbjct:  257 GPVVLYIDNRSAIDLAKNPVFHGRSKHIDLRFHFIRECVEKGEVVIKHIGTEE 309          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00143D83878.680e-943.55secreted RxLR effector protein 161-like n=1 Tax=Be... [more]
UPI001ED8A2C81.200e-842.65secreted RxLR effector protein 161-like n=1 Tax=Is... [more]
A0A6G1EJC3_9ORYZ6.530e-838.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4M556_9APHY8.920e-844.62Integrase catalytic domain-containing protein (Fra... [more]
UPI0019297FE21.450e-737.14uncharacterized mitochondrial protein AtMg00810-li... [more]
J6FCP9_TRIAS1.740e-744.12Integrase catalytic domain-containing protein n=2 ... [more]
A0A803LCB7_CHEQI1.770e-743.55Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
H3G7Q7_PHYRM1.900e-738.10Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
UPI0007EF63DB2.110e-740.63uncharacterized mitochondrial protein AtMg00810-li... [more]
UPI0007F02BA22.400e-749.06uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:281560..282016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue6.2e-07
Seed eggNOG ortholog67593.Physo140614
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size267
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.1281927-UTR-S-ischiensis_contig85:281559..2817491622817342.1281927-UTR-S-ischiensis_contig85:281559..281749Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 281560..281749 +
1695741041.542427-UTR-S-ischiensis_contig85:281559..2817491695741041.542427-UTR-S-ischiensis_contig85:281559..281749Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 281560..281749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.1405246-CDS-S-ischiensis_contig85:281749..2820161622817342.1405246-CDS-S-ischiensis_contig85:281749..282016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 281750..282016 +
1695741041.5581026-CDS-S-ischiensis_contig85:281749..2820161695741041.5581026-CDS-S-ischiensis_contig85:281749..282016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 281750..282016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20137.1prot_S-ischiensis_contig85.20137.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 281750..282016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20137.1

>prot_S-ischiensis_contig85.20137.1 ID=prot_S-ischiensis_contig85.20137.1|Name=mRNA_S-ischiensis_contig85.20137.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=89bp
MWPWARRAGRSQEAAYPRSLLLSIEHVQQGPIVLYEDNEAAISLAVKGIF
SARTKHIETRFHYVCQLVERGVVSVQKIAMEESGRRPD*
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mRNA from alignment at S-ischiensis_contig85:281560..282016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20137.1 ID=mRNA_S-ischiensis_contig85.20137.1|Name=mRNA_S-ischiensis_contig85.20137.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=457bp|location=Sequence derived from alignment at S-ischiensis_contig85:281560..282016+ (Schizocladia ischiensis KU_0333)
CGGATCTCAGCGTCCACTAAGGCGGCGACCAAGACGTCATCCTGGAGGGC AATGTTGACGCGGGCTTCGCCGGTGACGTGGGCGGGTGCCGTTCCACAAC CGGGTACGTCTTCTATCTGGGGGGCGGGCCAATTCTGCTGCAGCTCGAAG TTATAGTCACTGGTGACCCTCAGTACGGCGGAAAGCGAGTATGTGGCCCT GGGCTCGGCGAGCCGGGAGGAGCCAGGAGGCCGCGTACCCCCGTAGCCTG CTGTTGTCCATTGAGCACGTTCAGCAGGGGCCCATCGTGCTCTACGAAGA CAATGAGGCGGCTATCTCACTTGCGGTCAAGGGCATCTTCTCGGCACGCA CCAAACACATCGAAACCAGATTCCACTATGTGTGCCAACTGGTGGAGCGT GGGGTGGTGAGTGTGCAGAAGATTGCAATGGAGGAGAGTGGGAGACGCCC TGACTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:281560..282016+

>mRNA_S-ischiensis_contig85.20137.1 ID=mRNA_S-ischiensis_contig85.20137.1|Name=mRNA_S-ischiensis_contig85.20137.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=534bp|location=Sequence derived from alignment at S-ischiensis_contig85:281560..282016+ (Schizocladia ischiensis KU_0333)
ATGTGGCCCTGGGCTCGGCGAGCCGGGAGGAGCCAGGAGGCCGCGTACCC
CCGTAGCCTGCTGTTGTCCATTGAGCACGTTCAGCAGGGGCCCATCGTGC
TCTACGAAGACAATGAGGCGGCTATCTCACTTGCGGTCAAGGGCATCTTC
TCGGCACGCACCAAACACATCGAAACCAGATTCCACTATGTGTGCCAACT
GGTGGAGCGTGGGGTGGTGAGTGTGCAGAAGATTGCAATGGAGGAGAGTG
GGAGACGCCCTGACTAAATGTGGCCCTGGGCTCGGCGAGCCGGGAGGAGC
CAGGAGGCCGCGTACCCCCGTAGCCTGCTGTTGTCCATTGAGCACGTTCA
GCAGGGGCCCATCGTGCTCTACGAAGACAATGAGGCGGCTATCTCACTTG
CGGTCAAGGGCATCTTCTCGGCACGCACCAAACACATCGAAACCAGATTC
CACTATGTGTGCCAACTGGTGGAGCGTGGGGTGGTGAGTGTGCAGAAGAT
TGCAATGGAGGAGAGTGGGAGACGCCCTGACTAA
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