mRNA_S-ischiensis_contig85.20135.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20135.1
Unique NamemRNA_S-ischiensis_contig85.20135.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:279811..280472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size644
Cds size585
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20135.1prot_S-ischiensis_contig85.20135.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 279811..280415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.673559-CDS-S-ischiensis_contig85:279810..2802911622817339.673559-CDS-S-ischiensis_contig85:279810..280291Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 279811..280291 +
1695741039.8008258-CDS-S-ischiensis_contig85:279810..2802911695741039.8008258-CDS-S-ischiensis_contig85:279810..280291Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 279811..280291 +
1622817339.6859958-CDS-S-ischiensis_contig85:280311..2804151622817339.6859958-CDS-S-ischiensis_contig85:280311..280415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 280312..280415 +
1695741039.8104105-CDS-S-ischiensis_contig85:280311..2804151695741039.8104105-CDS-S-ischiensis_contig85:280311..280415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 280312..280415 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.6979117-UTR-S-ischiensis_contig85:280415..2804721622817339.6979117-UTR-S-ischiensis_contig85:280415..280472Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 280416..280472 +
1695741039.820005-UTR-S-ischiensis_contig85:280415..2804721695741039.820005-UTR-S-ischiensis_contig85:280415..280472Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 280416..280472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20135.1

>prot_S-ischiensis_contig85.20135.1 ID=prot_S-ischiensis_contig85.20135.1|Name=mRNA_S-ischiensis_contig85.20135.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
SAPGGTGSSQEGNPELAASAVKAAAVAIGGDSASAAEGAHTHVLDLMHQE
GAGSRNLLPGPDALDVEWGAGATCATLTDAVFGPDGMPIRGAPGTGANAE
EQAGPVAPGGNSDHGPCADSDKDSEASSDSADSVESGPARDKSRQVCELN
KLAIGGTTTALCLSPGVGCSGPRVTGREPCGRSHRRGGECGAGW*
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mRNA from alignment at S-ischiensis_contig85:279811..280472+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20135.1 ID=mRNA_S-ischiensis_contig85.20135.1|Name=mRNA_S-ischiensis_contig85.20135.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=662bp|location=Sequence derived from alignment at S-ischiensis_contig85:279811..280472+ (Schizocladia ischiensis KU_0333)
TCAGCCCCGGGAGGCACTGGCTCGTCACAGGAGGGCAACCCTGAGCTGGC
GGCGTCGGCGGTCAAGGCAGCTGCTGTCGCTATCGGTGGAGACTCGGCCT
CAGCGGCCGAGGGGGCGCACACTCATGTCCTGGATCTGATGCATCAAGAG
GGGGCGGGTTCACGCAATCTGCTGCCCGGACCGGATGCCCTGGACGTGGA
GTGGGGCGCAGGAGCCACGTGTGCGACTCTCACGGACGCCGTCTTCGGGC
CTGACGGGATGCCTATCAGAGGCGCTCCTGGGACTGGCGCCAACGCGGAG
GAGCAGGCCGGCCCTGTCGCTCCGGGGGGCAACTCGGACCACGGCCCGTG
TGCTGACTCGGACAAAGACTCGGAGGCATCAAGTGACTCTGCGGACAGTG
TCGAGTCGGGCCCAGCCCGGGACAAGTCCAGACAGGTGTGTGAGCTCAAC
AAGCTGGCTATCGGAGGCACCACGACAGCGCCGCTGGGAGGGTGGACTCG
GTCTGCCTCTCGCCAGGCGTCGGCTGTTCCGGCCCCCGCGTCACCGGGAG
GGAGCCCTGCGGGCGCTCCCACCGGCGAGGCGGCGAGTGCGGGGCCGGAT
GGTGAGGCTTTCTTCCTGGAGGAGTACTATGACAACGTGGACCACCTGCT
TTTGGACATGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:279811..280472+

>mRNA_S-ischiensis_contig85.20135.1 ID=mRNA_S-ischiensis_contig85.20135.1|Name=mRNA_S-ischiensis_contig85.20135.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig85:279811..280472+ (Schizocladia ischiensis KU_0333)
TCAGCCCCGGGAGGCACTGGCTCGTCACAGGAGGGCAACCCTGAGCTGGC
GGCGTCGGCGGTCAAGGCAGCTGCTGTCGCTATCGGTGGAGACTCGGCCT
CAGCGGCCGAGGGGGCGCACACTCATGTCCTGGATCTGATGCATCAAGAG
GGGGCGGGTTCACGCAATCTGCTGCCCGGACCGGATGCCCTGGACGTGGA
GTGGGGCGCAGGAGCCACGTGTGCGACTCTCACGGACGCCGTCTTCGGGC
CTGACGGGATGCCTATCAGAGGCGCTCCTGGGACTGGCGCCAACGCGGAG
GAGCAGGCCGGCCCTGTCGCTCCGGGGGGCAACTCGGACCACGGCCCGTG
TGCTGACTCGGACAAAGACTCGGAGGCATCAAGTGACTCTGCGGACAGTG
TCGAGTCGGGCCCAGCCCGGGACAAGTCCAGACAGGTGTGTGAGCTCAAC
AAGCTGGCTATCGGAGGCACCACGACAGCGCTCAGCCCCGGGAGGCACTG
GCTCGTCACAGGAGGGCAACCCTGAGCTGGCGGCGTCGGCGGTCAAGGCA
GCTGCTGTCGCTATCGGTGGAGACTCGGCCTCAGCGGCCGAGGGGGCGCA
CACTCATGTCCTGGATCTGATGCATCAAGAGGGGGCGGGTTCACGCAATC
TGCTGCCCGGACCGGATGCCCTGGACGTGGAGTGGGGCGCAGGAGCCACG
TGTGCGACTCTCACGGACGCCGTCTTCGGGCCTGACGGGATGCCTATCAG
AGGCGCTCCTGGGACTGGCGCCAACGCGGAGGAGCAGGCCGGCCCTGTCG
CTCCGGGGGGCAACTCGGACCACGGCCCGTGTGCTGACTCGGACAAAGAC
TCGGAGGCATCAAGTGACTCTGCGGACAGTGTCGAGTCGGGCCCAGCCCG
GGACAAGTCCAGACAGGTGTGTGAGCTCAACAAGCTGGCTATCGGAGGCA
CCACGACAGCGCTCTGCCTCTCGCCAGGCGTCGGCTGTTCCGGCCCCCGC
GTCACCGGGAGGGAGCCCTGCGGGCGCTCCCACCGGCGAGGCGGCGAGTG
CGGGGCCGGATGGTGATCTGCCTCTCGCCAGGCGTCGGCTGTTCCGGCCC
CCGCGTCACCGGGAGGGAGCCCTGCGGGCGCTCCCACCGGCGAGGCGGCG
AGTGCGGGGCCGGATGGTGA
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