mRNA_S-ischiensis_contig85.20129.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20129.1
Unique NamemRNA_S-ischiensis_contig85.20129.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:244339..245027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size271
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20129.1prot_S-ischiensis_contig85.20129.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 244341..245027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.5320098-CDS-S-ischiensis_contig85:244340..2444011622817339.5320098-CDS-S-ischiensis_contig85:244340..244401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 244341..244401 -
1695741039.699098-CDS-S-ischiensis_contig85:244340..2444011695741039.699098-CDS-S-ischiensis_contig85:244340..244401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 244341..244401 -
1622817339.5444732-CDS-S-ischiensis_contig85:244687..2447521622817339.5444732-CDS-S-ischiensis_contig85:244687..244752Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 244688..244752 -
1695741039.7106435-CDS-S-ischiensis_contig85:244687..2447521695741039.7106435-CDS-S-ischiensis_contig85:244687..244752Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 244688..244752 -
1622817339.5558586-CDS-S-ischiensis_contig85:244886..2450271622817339.5558586-CDS-S-ischiensis_contig85:244886..245027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 244887..245027 -
1695741039.7232502-CDS-S-ischiensis_contig85:244886..2450271695741039.7232502-CDS-S-ischiensis_contig85:244886..245027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 244887..245027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20129.1

>prot_S-ischiensis_contig85.20129.1 ID=prot_S-ischiensis_contig85.20129.1|Name=mRNA_S-ischiensis_contig85.20129.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=89bp
LSSLEFNLPYGLAGALLGSSLGFAAGCRAFGKARHGGLLDTPWTIGLVTL
AFSVAGAAAATILSCTYLIDYRNAFTCVEVITHAVGPLS
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mRNA from alignment at S-ischiensis_contig85:244339..245027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20129.1 ID=mRNA_S-ischiensis_contig85.20129.1|Name=mRNA_S-ischiensis_contig85.20129.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=689bp|location=Sequence derived from alignment at S-ischiensis_contig85:244339..245027- (Schizocladia ischiensis KU_0333)
CTGTCGTCGCTGGAGTTCAACCTACCTTATGGGTTGGCAGGCGCTCTGCT
GGGAAGCTCCCTCGGGTTCGCGGCAGGATGTCGAGCGTTCGGCAAGGCCA
GGCATGGCGGGCTTCTGGATACGCCGTGGACGATAGGGCTGGTGAGTGTA
AAGCGAGGGCAGTTCGTTGGGTACTGAGGCAACCCCCAAAACTCGTACTC
GAGTAACCCATTTGCCACGGGAACTTGCGGGAACAGCACCAACACCTCCC
GTTGCTGTCCCATCGGGTGCCCCAGGTGACGCTGGCATTTTCCGTGGCGG
GCGCGGCCGCAGCCACGATTCTCAGCTGCACGTACCTCATGTGAGTGTTT
TCCTTCAGCCCTGTGCCCTCGTGGAAACTGTGCCGGGCTTTGCTTGCCTC
GCGTCCCAACACGTACGAGCTCGGCCACAGGTGGTCGTGGTGATTGACGC
AAAATATTGCTGCGCCCTAGGTAGCGTGGCTTATCCTCGACGTACATCGA
ATTCACACATGCCGTGCGAAATCGTAGCCCGCCTTGGCTAGTCATCTCCC
CACTCCAAGCACTCGAGTGCATGACTTGCACTGACCCGCACACCCGTGGC
TGTTGTTCCCGCCAAACGCCTCCCAGAGACTACAGAAACGCCTTCACCTG
TGTTGAGGTGATCACACATGCCGTGGGCCCACTATCGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:244339..245027-

>mRNA_S-ischiensis_contig85.20129.1 ID=mRNA_S-ischiensis_contig85.20129.1|Name=mRNA_S-ischiensis_contig85.20129.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=534bp|location=Sequence derived from alignment at S-ischiensis_contig85:244339..245027- (Schizocladia ischiensis KU_0333)
CTGTCGTCGCTGGAGTTCAACCTACCTTATGGGTTGGCAGGCGCTCTGCT
GGGAAGCTCCCTCGGGTTCGCGGCAGGATGTCGAGCGTTCGGCAAGGCCA
GGCATGGCGGGCTTCTGGATACGCCGTGGACGATAGGGCTGCTGTCGTCG
CTGGAGTTCAACCTACCTTATGGGTTGGCAGGCGCTCTGCTGGGAAGCTC
CCTCGGGTTCGCGGCAGGATGTCGAGCGTTCGGCAAGGCCAGGCATGGCG
GGCTTCTGGATACGCCGTGGACGATAGGGCTGGTGACGCTGGCATTTTCC
GTGGCGGGCGCGGCCGCAGCCACGATTCTCAGCTGCACGTACCTCATGTG
ACGCTGGCATTTTCCGTGGCGGGCGCGGCCGCAGCCACGATTCTCAGCTG
CACGTACCTCATAGACTACAGAAACGCCTTCACCTGTGTTGAGGTGATCA
CACATGCCGTGGGCCCACTATCGAGACTACAGAAACGCCTTCACCTGTGT
TGAGGTGATCACACATGCCGTGGGCCCACTATCG
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