mRNA_S-ischiensis_contig85.20121.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20121.1
Unique NamemRNA_S-ischiensis_contig85.20121.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20121.1 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.390e-8
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   22 PKKLPATQTEFERDWLRRCRSDKDQQSYLALVEPKRLAKLFAADMPPNLLGGVLGVLAR 198
            P + P TQ+EFERDW RRC++  D  + L LV    + KLF  ++ P LLG +LGVL+R
Sbjct:   41 PLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSR 99
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7R2_9STRA3.390e-849.15RPAP3_C domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:167720..168311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.2794878-CDS-S-ischiensis_contig85:167719..1683101622817340.2794878-CDS-S-ischiensis_contig85:167719..168310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 167720..168310 +
1695741040.1720896-CDS-S-ischiensis_contig85:167719..1683101695741040.1720896-CDS-S-ischiensis_contig85:167719..168310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 167720..168310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20121.1prot_S-ischiensis_contig85.20121.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 167720..168310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20121.1

>prot_S-ischiensis_contig85.20121.1 ID=prot_S-ischiensis_contig85.20121.1|Name=mRNA_S-ischiensis_contig85.20121.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
RGPAQGPPKKLPATQTEFERDWLRRCRSDKDQQSYLALVEPKRLAKLFAA
DMPPNLLGGVLGVLARGFEGTSKCPPPPSDGGAAEPGVGGGAPNTGGAAP
AQEDEALGKDGSGGGLLTSGGGGGVGAAAPASEPPAAAATAADTGGSSRQ
AQAEGEDMGESNSRPRAKPADTFPHAKPVKAGSGGVGAAEECVAWLE
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mRNA from alignment at S-ischiensis_contig85:167720..168311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20121.1 ID=mRNA_S-ischiensis_contig85.20121.1|Name=mRNA_S-ischiensis_contig85.20121.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=592bp|location=Sequence derived from alignment at S-ischiensis_contig85:167720..168311+ (Schizocladia ischiensis KU_0333)
CGCGGACCGGCGCAAGGCCCACCAAAAAAACTTCCCGCCACGCAGACGGA
GTTTGAGCGAGACTGGCTCCGCCGCTGCCGCTCGGACAAGGACCAGCAGA
GCTACCTGGCCCTGGTGGAGCCCAAACGCCTGGCCAAGCTCTTCGCGGCC
GACATGCCCCCCAACTTGTTGGGAGGCGTCTTGGGTGTCCTCGCGAGGGG
TTTCGAGGGTACGAGTAAATGCCCCCCCCCGCCGAGCGACGGCGGCGCGG
CGGAGCCTGGCGTGGGAGGGGGCGCGCCCAACACAGGGGGGGCAGCACCA
GCGCAAGAGGATGAAGCTCTGGGCAAGGACGGCAGCGGCGGGGGGCTGCT
CACGAGTGGCGGCGGTGGTGGCGTCGGTGCTGCTGCCCCTGCCTCTGAAC
CCCCCGCGGCTGCCGCCACTGCAGCGGACACAGGCGGTAGCAGCCGCCAG
GCTCAGGCTGAGGGGGAAGATATGGGCGAAAGCAATAGCCGCCCGCGCGC
TAAGCCTGCCGACACTTTTCCCCATGCCAAGCCGGTGAAAGCGGGCTCGG
GGGGGGTGGGGGCAGCGGAGGAGTGCGTAGCGTGGTTGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:167720..168311+

>mRNA_S-ischiensis_contig85.20121.1 ID=mRNA_S-ischiensis_contig85.20121.1|Name=mRNA_S-ischiensis_contig85.20121.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig85:167720..168311+ (Schizocladia ischiensis KU_0333)
CGCGGACCGGCGCAAGGCCCACCAAAAAAACTTCCCGCCACGCAGACGGA
GTTTGAGCGAGACTGGCTCCGCCGCTGCCGCTCGGACAAGGACCAGCAGA
GCTACCTGGCCCTGGTGGAGCCCAAACGCCTGGCCAAGCTCTTCGCGGCC
GACATGCCCCCCAACTTGTTGGGAGGCGTCTTGGGTGTCCTCGCGAGGGG
TTTCGAGGGTACGAGTAAATGCCCCCCCCCGCCGAGCGACGGCGGCGCGG
CGGAGCCTGGCGTGGGAGGGGGCGCGCCCAACACAGGGGGGGCAGCACCA
GCGCAAGAGGATGAAGCTCTGGGCAAGGACGGCAGCGGCGGGGGGCTGCT
CACGAGTGGCGGCGGTGGTGGCGTCGGTGCTGCTGCCCCTGCCTCTGAAC
CCCCCGCGGCTGCCGCCACTGCAGCGGACACAGGCGGTAGCAGCCGCCAG
GCTCAGGCTGAGGGGGAAGATATGGGCGAAAGCAATAGCCGCCCGCGCGC
TAAGCCTGCCGACACTTTTCCCCATGCCAAGCCGGTGAAAGCGGGCTCGG
GGGGGGTGGGGGCAGCGGAGGAGTGCGTAGCGTGGTTGGAGCGCGGACCG
GCGCAAGGCCCACCAAAAAAACTTCCCGCCACGCAGACGGAGTTTGAGCG
AGACTGGCTCCGCCGCTGCCGCTCGGACAAGGACCAGCAGAGCTACCTGG
CCCTGGTGGAGCCCAAACGCCTGGCCAAGCTCTTCGCGGCCGACATGCCC
CCCAACTTGTTGGGAGGCGTCTTGGGTGTCCTCGCGAGGGGTTTCGAGGG
TACGAGTAAATGCCCCCCCCCGCCGAGCGACGGCGGCGCGGCGGAGCCTG
GCGTGGGAGGGGGCGCGCCCAACACAGGGGGGGCAGCACCAGCGCAAGAG
GATGAAGCTCTGGGCAAGGACGGCAGCGGCGGGGGGCTGCTCACGAGTGG
CGGCGGTGGTGGCGTCGGTGCTGCTGCCCCTGCCTCTGAACCCCCCGCGG
CTGCCGCCACTGCAGCGGACACAGGCGGTAGCAGCCGCCAGGCTCAGGCT
GAGGGGGAAGATATGGGCGAAAGCAATAGCCGCCCGCGCGCTAAGCCTGC
CGACACTTTTCCCCATGCCAAGCCGGTGAAAGCGGGCTCGGGGGGGGTGG
GGGCAGCGGAGGAGTGCGTAGCGTGGTTGGAG
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