mRNA_S-ischiensis_contig85.20111.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20111.1
Unique NamemRNA_S-ischiensis_contig85.20111.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig85.20111.1 vs. uniprot
Match: A0A0E9NGX2_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NGX2_SAICN)

HSP 1 Score: 57.8 bits (138), Expect = 6.880e-7
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:   67 LRSLYGLVFHALEYSKLRPLAARLLHAITIRRHALPYRARRVRELMEQTGVESRESAGLFLVLRVFATYCDSVTVPHTRARNGAASILTQSVDKEWESRMEGVWGRREQGDASDSERTMASQARETG 447
            L  LYG++FH L Y+ LRP    +L  IT R+H  P R   V E ++     S E   L  +LRV+A Y   V V +TR R G   ++ +  D E+  R+  +  +  QGD   S     ++ R TG
Sbjct:  146 LSKLYGVLFHYLGYTTLRPYLCHILFLITRRKHVTPARISAVNEYIKW----SVEDGALNALLRVYADYYPDVVVANTR-RGGRRGVVFKDPDPEFSERLAAIQAK--QGDRPSSGGFEGAKRRRTG 265
[Close]
BLAST of mRNA_S-ischiensis_contig85.20111.1 vs. uniprot
Match: A0A8H7V1C5_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7V1C5_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 2.040e-5
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   76 LYGLVFHALEYSKLRPLAARLLHAITIRRHALPYRARRVRELMEQTGVESRESAGLFLVLRVFATYCDSVTVPH 297
            LY ++FH+L  + +R  A  LL+ IT R H +PYR RR+ +L+       +++A L  +L V+ TY  S+ VPH
Sbjct:  176 LYPVLFHSLHQASVRAAACHLLYFITRREHVIPYRIRRLNDLINS----EKDNAELIGLLLVYQTYDFSIIVPH 245
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0E9NGX2_SAICN6.880e-734.65Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A8H7V1C5_9FUNG2.040e-539.19Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:79546..82976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.1
Seed ortholog evalue1e-09
Seed eggNOG ortholog5039.XP_002624503.1
KEGG koko:K11501
GOsGO:0000070,GO:0000184,GO:0000228,GO:0000278,GO:0000280,GO:0000381,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000939,GO:0000941,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006325,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022607,GO:0031323,GO:0031511,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034501,GO:0034502,GO:0034506,GO:0034508,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035145,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0046700,GO:0048024,GO:0048285,GO:0048519,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051276,GO:0051382,GO:0051383,GO:0051641,GO:0060255,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071459,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903047,GO:1903311
EggNOG free text desc.Mis6
EggNOG OGs20FMH@147545,2CN6X@1,2QU9H@2759,39TER@33154,3B2WA@33183,3NZBZ@4751,3QQIQ@4890
COG Functional cat.S
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categorysignal peptide
Exons4
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20111.1prot_S-ischiensis_contig85.20111.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 79548..82976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.8065128-CDS-S-ischiensis_contig85:79547..795781622817340.8065128-CDS-S-ischiensis_contig85:79547..79578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 79548..79578 -
1695741040.4799042-CDS-S-ischiensis_contig85:79547..795781695741040.4799042-CDS-S-ischiensis_contig85:79547..79578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 79548..79578 -
1622817340.8188674-CDS-S-ischiensis_contig85:80445..805531622817340.8188674-CDS-S-ischiensis_contig85:80445..80553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 80446..80553 -
1695741040.4948194-CDS-S-ischiensis_contig85:80445..805531695741040.4948194-CDS-S-ischiensis_contig85:80445..80553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 80446..80553 -
1622817340.8324854-CDS-S-ischiensis_contig85:81562..816761622817340.8324854-CDS-S-ischiensis_contig85:81562..81676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 81563..81676 -
1695741040.5118098-CDS-S-ischiensis_contig85:81562..816761695741040.5118098-CDS-S-ischiensis_contig85:81562..81676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 81563..81676 -
1622817340.8440678-CDS-S-ischiensis_contig85:82782..829761622817340.8440678-CDS-S-ischiensis_contig85:82782..82976Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 82783..82976 -
1695741040.525135-CDS-S-ischiensis_contig85:82782..829761695741040.525135-CDS-S-ischiensis_contig85:82782..82976Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 82783..82976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20111.1

>prot_S-ischiensis_contig85.20111.1 ID=prot_S-ischiensis_contig85.20111.1|Name=mRNA_S-ischiensis_contig85.20111.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
QVLVLKFLVLTWERMTPGAQACLRSLYGLVFHALEYSKLRPLAARLLHAI
TIRRHALPYRARRVRELMEQTGVESRESAGLFLVLRVFATYCDSVTVPHT
RARNGAASILTQSVDKEWESRMEGVWGRREQGDASDSERTMASQARETG
back to top

mRNA from alignment at S-ischiensis_contig85:79546..82976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20111.1 ID=mRNA_S-ischiensis_contig85.20111.1|Name=mRNA_S-ischiensis_contig85.20111.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3431bp|location=Sequence derived from alignment at S-ischiensis_contig85:79546..82976- (Schizocladia ischiensis KU_0333)
CAGGTGCTGGTGCTCAAGTTCCTGGTGCTCACGTGGGAGCGCATGACGCC
AGGGGCCCAGGCGTGTCTGCGCAGCCTATACGGCCTTGTCTTCCACGCTC
TGGAGTACTCCAAACTAAGGCCCCTGGCGGCTAGGCTGCTCCACGCCATC
ACCATCCGGAGGCACGCCCTGCCGTACCGGGCGAGGCGCGTGAGGTCAGC
GGCGGGGGGGTTGTTGTGGTGGTAATGGTGGTTGGTGGTGGTGGTGGTGA
TGGTGATGGTGGTGGTGGCGGCGTAATGTGGTTGTGGTGGCAACGGTTGC
AATGGTGGTGATGGTGGTGGTGGTGGCGGCGGCAGCGGTTGCAATGGTGG
TAGGGGTGGTGGGGGTGGTGGCGGTGGCAATGTGGTTGTGGCCGCAGCGG
TTACAATGGTGGTGGTGTAACCTTCCATGTTTCCAGCTCCTTGTTTTGAT
TGTTTTCAATGGCATGCGAGTTCCGGACCCCATCCCCAATTGGTTGTAAC
ATAACTGATATTTTTTGGTACTGTAGCAGCTATTGCCGATGCAATGTCCG
GCGACTGTACCTAGCGGTCGGGATCCATCATCCTGGTTGTTCCTCCCGTG
ACCGTTAGGGCGCCAGTGCGCCCAAGAGCAACTCTGCGAAGAGACTCACA
AGTACTCGCCGACGGCTATGGGTTGTCGTAGTCTACGAAGCGGCCCCTCA
TCCGGCTTGCCGACGCCAAGGCATATGAAATTCCAGGCTTGGCCAGTGCG
CGGCCTGGCCTGCACGAACCCTGCATGCTCCGTCCCGGCCTAGTTGGGAT
GCGAGAGTCCATGGCTACGTACAAGTAGCTACTCCTGGCGGAGGGCAAAC
CCAAAGTTTCGACTTGGCGCAGTCGGCATTGCACGCGAGATTATGTCGCA
AAACACGCCAATGAGTACATGTATTGCCGCTGGCATGGGAGCTACAGGCG
CCGTCTGCCCCGAACTGGGGACCCCACCAAAGAAGCGACACACAGGGGCA
ATGCAGGGGGGCTGATGTGATGTGATGTGATGTGCACTCTAACGTACTGT
AGTTTGACATCACATCACATCACATCACGATAGCACAAGAACGTACTTTG
AAGTAGCAAAGAAGTGACACACAGGGGCAATGCAGGGGGGGTGATGTGAT
GTGATGTGCACTGTAGTGTACTTCGAAGTACAGTAGTTTGACATCACATC
ACTTTATTCAATAATGATGTGATGTGATGTGATGTGATGCATGCTCTCAA
GTGCAGTAGTTTGACATCACATCACATCACATCACTTCGCATCACATCAG
GGAGCTCATGGAGCAGACTGGGGTGGAGAGCAGGGAATCGGCGGGCCTGT
TCTTGGTGCTGAGGGTGTTTGCAACCTACTGCGACAGCGTCACCGTGCCC
CACACCAGGGCCAGGTACGACATTGGACGTAGACTCTCAATGCATATATA
TGTACTCACGTGGCACTTGCCGTAGTCCCGAGCCCATTGACCATGCGCCT
CGGTTGTGACGGAGCAGTGCCCCACGCCAGGGCCAGGTGCGACATTGTGC
GAAGTACGTCGGCTTTCAATACATGGTATATGTACTTCAAGGTACTCTTC
TCATTGGCTTACAGCACTGTACATAGTTGTCTTGCGACATACCGTTGCGT
GCATTGCCGACGGCCGTAAGTCGAAAATTAGTTGTATTCTGAAAGTAAGC
ACCACGTGAGTACGTATGTATATATGTACTCATTGGCTTGTCTTGCGATA
TAACCTTGCGTGCAATGCTGACAGCGCTAGGTCGAAACCTCGGGTTTGTA
TGTATGTGTATATGCACTCATTGGCTTGTCTTGCGTATGAACTTGAGCGC
ATTGCCGACAGCCCTAAGCAACTTGAGGTTTGCCTTCCGACAGGATTACG
CAGCTACCTTTCGGCATTGTAGCGCCGAGTCTGAGTCTGCCAAAAAGTAG
CTCCCATAATACGAGCTGGAGGAAGTACAGTACATTGACTGCGATGTGCT
TCCAAGTACGTGAACAAAGTACTTCCAAGCACTCCCAAACACTAGCAAGT
ACTCCATCACAAGCAGTTCCAAGCACTCCTTGTAGCAAGTCCTCCAACAG
TGTACATTATCGTGCGCATCACATCACATCAAATCATGTCACATCGCATC
TCATCTTTGACTCTCGCTAGGCTTGCCAGAGCGGTGTTGCTGAACAAACT
GTGATGGCATGGGATGGGATGGGATGTCAAACTGCAGTAGAGCATCATGA
ACATCACATCACATTACATCACATCACAAACCACAATACAGCAAAACACA
CGTCACGCGACATCACATCGAATTATGTCCCTTCCCTGTCCAGCCCGCAT
GATCCGTCTACTTGTAGACAAACCCCCTCAAAAAACGAAAAACACTGCGT
GCAAAAAAAAATAAAAAAAGCAGGAACGGCGCTGCCTCCATTTTGACCCA
GTCTGTGGACAAGGAGTGGGAGTCCAGGATGGAAGGCGTGTGGGGTAGAC
GAGAGCAGGGAGATGCAAGTGATAGTGAAAGGTGAGACTGGCCAGGCGTT
TACTGAACTAGGGGCCGGAACTCGATTTGATGTGATGCGATGCCAAAGCT
GCAGGACGAGCACTTTGGCGTTGACGCGCGCACCGCATCGAGTCCAATGA
TGTGATGGGGTGTGTGTGGTGTGATGTGATGTGGTGAAATGTGTGCATTA
GAGTGCACGTCACGTCGCATCACGCGACAATTCAGTGCACATCCCCTTAG
AATCGCATGTGTACCGCGCTAGTGCAAACGCCTGCCAAAATACAACTCTG
TACAGTATGTACCACAGTATGTCCTCATAGTGGTTGGATCTGCCTCTGTT
AAGCGTGGCGCTCTCATCCCACTCTACTAGTACTTACAACCCTGCATGCA
GTTGGATCTGCCTCTGTCAGGTGTGGTGCTCTCATCCCACTATGCTGTCT
ATAGCTGAAGTGCCTCGGTTAGCTGCGACAGCTCATCCTTTCTACTCGTA
AGAGTACATAGTGTACGCGTACACTACTGTGGTACACTACAGTACAGTAC
GAACTTTCCTCTTTTGTACTGGGCTTGTTTTACTTTAGCTAGAAGCTCTC
TAGGGACAACTACACCTGGTTGAATATATATATATATATATATGTACTCA
CGTTGCGCTTGCCGTAGTCCCAAGACCATTGACCACGCGCCTCGGTCGAG
ACGGAGCAGGTGCACCCGCATACAAGCTCCTTCTCTGGCTGAAACTGTAA
CCTTTTTGCGGCCGTCCTCTCGCTCTCAGGCCCGCGGTGTCGCAGGCCAG
GGGGACTGGGAATGTGGGGGGCGGTGAGGGTGGCTGAAACTGTAACCTAT
GTAGCTGCCGAAACTGTAACCTTTGTGCGCCCGCCCTCTCGCTCTCAGGA
CCATGGCATCGCAGGCCAGGGAGACTGGGAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig85:79546..82976-

>mRNA_S-ischiensis_contig85.20111.1 ID=mRNA_S-ischiensis_contig85.20111.1|Name=mRNA_S-ischiensis_contig85.20111.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig85:79546..82976- (Schizocladia ischiensis KU_0333)
CAGGTGCTGGTGCTCAAGTTCCTGGTGCTCACGTGGGAGCGCATGACGCC
AGGGGCCCAGGCGTGTCTGCGCAGCCTATACGGCCTTGTCTTCCACGCTC
TGGAGTACTCCAAACTAAGGCCCCTGGCGGCTAGGCTGCTCCACGCCATC
ACCATCCGGAGGCACGCCCTGCCGTACCGGGCGAGGCGCGTGAGCAGGTG
CTGGTGCTCAAGTTCCTGGTGCTCACGTGGGAGCGCATGACGCCAGGGGC
CCAGGCGTGTCTGCGCAGCCTATACGGCCTTGTCTTCCACGCTCTGGAGT
ACTCCAAACTAAGGCCCCTGGCGGCTAGGCTGCTCCACGCCATCACCATC
CGGAGGCACGCCCTGCCGTACCGGGCGAGGCGCGTGAGGGAGCTCATGGA
GCAGACTGGGGTGGAGAGCAGGGAATCGGCGGGCCTGTTCTTGGTGCTGA
GGGTGTTTGCAACCTACTGCGACAGCGTCACCGTGCCCCACACCAGGGCC
AGGGAGCTCATGGAGCAGACTGGGGTGGAGAGCAGGGAATCGGCGGGCCT
GTTCTTGGTGCTGAGGGTGTTTGCAACCTACTGCGACAGCGTCACCGTGC
CCCACACCAGGGCCAGGAACGGCGCTGCCTCCATTTTGACCCAGTCTGTG
GACAAGGAGTGGGAGTCCAGGATGGAAGGCGTGTGGGGTAGACGAGAGCA
GGGAGATGCAAGTGATAGTGAAAGGAACGGCGCTGCCTCCATTTTGACCC
AGTCTGTGGACAAGGAGTGGGAGTCCAGGATGGAAGGCGTGTGGGGTAGA
CGAGAGCAGGGAGATGCAAGTGATAGTGAAAGGACCATGGCATCGCAGGC
CAGGGAGACTGGGGACCATGGCATCGCAGGCCAGGGAGACTGGG
back to top