mRNA_S-ischiensis_contig85.20109.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20109.1
Unique NamemRNA_S-ischiensis_contig85.20109.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:48871..49489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.2177758-CDS-S-ischiensis_contig85:48870..494881622817340.2177758-CDS-S-ischiensis_contig85:48870..49488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 48871..49488 +
1695741040.148921-CDS-S-ischiensis_contig85:48870..494881695741040.148921-CDS-S-ischiensis_contig85:48870..49488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 48871..49488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20109.1prot_S-ischiensis_contig85.20109.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 48871..49488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20109.1

>prot_S-ischiensis_contig85.20109.1 ID=prot_S-ischiensis_contig85.20109.1|Name=mRNA_S-ischiensis_contig85.20109.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=206bp
HILGPEAISPVPRPREVATGTQSLPSAILSPQATSCPSVRVTEYLCSTPS
LQAPLLSRPSARPFSAPLFSPQSCPRDTSNAGTPFISFRRDQCSGLVQPP
SLYRTTLLYTCASPPALAPTPRPGPGPTGLHGLGPSSSGPAPNRQCLGQT
GAEQALPVPAVWPWGHCGRVLGSLRRLLDPWVGMRPVAVTVSVLSTSTSS
CSRRRA
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mRNA from alignment at S-ischiensis_contig85:48871..49489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20109.1 ID=mRNA_S-ischiensis_contig85.20109.1|Name=mRNA_S-ischiensis_contig85.20109.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=619bp|location=Sequence derived from alignment at S-ischiensis_contig85:48871..49489+ (Schizocladia ischiensis KU_0333)
CACATCCTCGGCCCAGAAGCGATCTCCCCAGTACCAAGGCCACGCGAAGT
TGCTACCGGGACCCAGTCTCTGCCCTCTGCCATTCTCTCTCCTCAGGCGA
CTTCTTGTCCCAGTGTCCGAGTCACGGAGTACCTCTGCTCTACCCCTTCC
CTCCAGGCTCCGCTCCTTTCCCGCCCGTCTGCCCGGCCGTTTTCAGCACC
TCTCTTCTCCCCCCAATCTTGTCCCAGAGATACAAGTAATGCGGGGACAC
CTTTCATCTCGTTCCGCCGTGACCAGTGCTCTGGATTGGTGCAACCGCCA
AGCCTATATCGGACGACTCTGCTGTACACGTGTGCCTCACCCCCTGCCCT
CGCCCCTACACCGAGACCCGGCCCCGGCCCCACCGGCCTGCATGGCCTCG
GGCCCAGCTCCAGCGGGCCTGCACCCAACCGCCAGTGCCTGGGCCAGACT
GGGGCGGAGCAGGCCTTGCCTGTGCCAGCAGTGTGGCCGTGGGGTCACTG
CGGAAGGGTGCTGGGCTCCCTGAGGCGTCTGCTTGACCCGTGGGTGGGTA
TGAGACCTGTAGCTGTAACTGTATCTGTTCTGTCAACTTCAACTTCAAGT
TGCTCCAGGAGGCGCGCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:48871..49489+

>mRNA_S-ischiensis_contig85.20109.1 ID=mRNA_S-ischiensis_contig85.20109.1|Name=mRNA_S-ischiensis_contig85.20109.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1236bp|location=Sequence derived from alignment at S-ischiensis_contig85:48871..49489+ (Schizocladia ischiensis KU_0333)
CACATCCTCGGCCCAGAAGCGATCTCCCCAGTACCAAGGCCACGCGAAGT
TGCTACCGGGACCCAGTCTCTGCCCTCTGCCATTCTCTCTCCTCAGGCGA
CTTCTTGTCCCAGTGTCCGAGTCACGGAGTACCTCTGCTCTACCCCTTCC
CTCCAGGCTCCGCTCCTTTCCCGCCCGTCTGCCCGGCCGTTTTCAGCACC
TCTCTTCTCCCCCCAATCTTGTCCCAGAGATACAAGTAATGCGGGGACAC
CTTTCATCTCGTTCCGCCGTGACCAGTGCTCTGGATTGGTGCAACCGCCA
AGCCTATATCGGACGACTCTGCTGTACACGTGTGCCTCACCCCCTGCCCT
CGCCCCTACACCGAGACCCGGCCCCGGCCCCACCGGCCTGCATGGCCTCG
GGCCCAGCTCCAGCGGGCCTGCACCCAACCGCCAGTGCCTGGGCCAGACT
GGGGCGGAGCAGGCCTTGCCTGTGCCAGCAGTGTGGCCGTGGGGTCACTG
CGGAAGGGTGCTGGGCTCCCTGAGGCGTCTGCTTGACCCGTGGGTGGGTA
TGAGACCTGTAGCTGTAACTGTATCTGTTCTGTCAACTTCAACTTCAAGT
TGCTCCAGGAGGCGCGCGCACATCCTCGGCCCAGAAGCGATCTCCCCAGT
ACCAAGGCCACGCGAAGTTGCTACCGGGACCCAGTCTCTGCCCTCTGCCA
TTCTCTCTCCTCAGGCGACTTCTTGTCCCAGTGTCCGAGTCACGGAGTAC
CTCTGCTCTACCCCTTCCCTCCAGGCTCCGCTCCTTTCCCGCCCGTCTGC
CCGGCCGTTTTCAGCACCTCTCTTCTCCCCCCAATCTTGTCCCAGAGATA
CAAGTAATGCGGGGACACCTTTCATCTCGTTCCGCCGTGACCAGTGCTCT
GGATTGGTGCAACCGCCAAGCCTATATCGGACGACTCTGCTGTACACGTG
TGCCTCACCCCCTGCCCTCGCCCCTACACCGAGACCCGGCCCCGGCCCCA
CCGGCCTGCATGGCCTCGGGCCCAGCTCCAGCGGGCCTGCACCCAACCGC
CAGTGCCTGGGCCAGACTGGGGCGGAGCAGGCCTTGCCTGTGCCAGCAGT
GTGGCCGTGGGGTCACTGCGGAAGGGTGCTGGGCTCCCTGAGGCGTCTGC
TTGACCCGTGGGTGGGTATGAGACCTGTAGCTGTAACTGTATCTGTTCTG
TCAACTTCAACTTCAAGTTGCTCCAGGAGGCGCGCG
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