mRNA_S-ischiensis_contig85.20108.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20108.1
Unique NamemRNA_S-ischiensis_contig85.20108.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: D8LMA2_ECTSI (COX4 neighbour n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.950e-16
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 2 
Query:   53 VKVGGKAYLKIMLHAAQHPWASVNGFLLGKGSVADELQVVDVVPLFHTATLAPLLEAAAGM 235
            V V   AYLK+MLHAA++PWA+VNGFLLG+  +  ++ V D VPLFHT+TLAPLLE +A M
Sbjct:    6 VNVEEAAYLKLMLHAAKYPWAAVNGFLLGEEGLTGQVSVKDAVPLFHTSTLAPLLETSAVM 66
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: L8HJ23_ACACA (MPN domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJ23_ACACA)

HSP 1 Score: 59.7 bits (143), Expect = 4.010e-9
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   59 VGGKAYLKIMLHAAQHPWASVNGFLLGKGSVADE-LQVVDVVPLFHTATLAPLLEAA 226
            V G AY KI++H  ++P+ +VNG LLG  S  D  +++VD +P FH ATLAP+LEAA
Sbjct:   11 VAGDAYAKIVMHINKYPYLAVNGVLLGSKSNGDAAIRIVDYIPFFHGATLAPMLEAA 67
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: UPI0005CDEBC5 (ER membrane protein complex subunit 8/9 homolog n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CDEBC5)

HSP 1 Score: 59.7 bits (143), Expect = 5.130e-9
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 2 
Query:   65 GKAYLKIMLHAAQHPWASVNGFLLGKGSVADELQVVDVVPLFH 193
            G+AY KI+LHAA++P  ++NG LLGK + ++ELQ++DV PLFH
Sbjct:    8 GRAYAKIILHAAKYPHCAINGLLLGKQNNSNELQIIDVAPLFH 50
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: A0A7M7G728_NASVI (MPN domain-containing protein n=2 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7G728_NASVI)

HSP 1 Score: 57.4 bits (137), Expect = 3.950e-8
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 2 
Query:   47 AGVKVGGKAYLKIMLHAAQHPWASVNGFLLGK---GSVADELQVVDVVPLFHTAT-LAPLLEAAAGM 235
            A +   G+AY KI+LHAA++P  ++NG LLGK    S   ELQ+VD VPLFH    ++P+ E A  M
Sbjct:    2 ADISFSGRAYAKIILHAAKYPHCAINGLLLGKQPKSSSGTELQIVDAVPLFHVCLHVSPMSEVALTM 68
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: A0A7S2S5A5_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5A5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-7
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:   71 AYLKIMLHAAQHPWASVNGFLLGKGSVADELQVVDVVPLFHTATLAPLLE 220
            A LKI+LHAA+H +A VNG L+G  S    +QVVD +PLFHT   AP+LE
Sbjct:   29 AQLKILLHAAKHLYAEVNGVLIGT-SKTGVVQVVDAIPLFHTPMFAPMLE 77
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: A0A7S2XUU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-7
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2 
Query:   68 KAYLKIMLHAAQHPWASVNGFLLGKGSVADE-------LQVVDVVPLFHTATLAPLLEAAAGM 235
            KAY K++LHA +H  ++VNGFL+G+ + A E       LQV DV+PLFH   L P+LEA++ M
Sbjct:   24 KAYSKLILHAFKHFASNVNGFLIGRVTHAGEGEDPEVDLQVEDVIPLFHHHPLVPILEASSAM 86
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: UPI0006C98CBB (ER membrane protein complex subunit 8/9 homolog n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C98CBB)

HSP 1 Score: 55.8 bits (133), Expect = 1.430e-7
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:   65 GKAYLKIMLHAAQHPWASVNGFLLGKGSVADELQVVDVVPLFH 193
            G+AY KI+LHAA++P  ++NG LLGK    +ELQ+VD VPLFH
Sbjct:    8 GRAYAKIILHAAKYPHCAINGLLLGKQK-GNELQIVDAVPLFH 49
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: UPI00096ADDD4 (ER membrane protein complex subunit 8/9 homolog n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096ADDD4)

HSP 1 Score: 54.7 bits (130), Expect = 3.710e-7
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:   53 VKVGGKAYLKIMLHAAQHPWASVNGFLLGKGSVA-DELQVVDVVPLFHTA-TLAPLLEAA 226
            +K   +AY KI+LHAA++P  ++NG LL K S   D+++ VDVVPLFH +  L P+ E A
Sbjct:    4 IKFSRRAYCKIILHAAKYPHCAINGVLLAKSSAKRDDIEFVDVVPLFHISINLTPMAEIA 63
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: A0A2R5GCS1_9STRA (ER membrane protein complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCS1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.030e-7
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 2 
Query:   59 VGGKAYLKIMLHAAQHPWASVNGFLLGKGSVADELQVVDVVPLFHTATLAPLLE 220
            VG +A+LKI+LHAA+HPWA  +G L+G      ++ V D +P  H   +AP++E
Sbjct:   27 VGRQAHLKILLHAAKHPWAETSGMLIGT-ETKGKISVTDAIPFCHAPMMAPIVE 79
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BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Match: UPI0006251AF4 (ER membrane protein complex subunit 8/9 homolog n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006251AF4)

HSP 1 Score: 53.5 bits (127), Expect = 1.080e-6
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:   47 AGVKVGGKAYLKIMLHAAQHPWASVNGFLLGK-----GSVADELQVVDVVPLFHTAT-LAPLLEAA 226
            A VK  G+AY KI+LHAA++P  ++NG LL +      S + E+ +VDVVPLFH    ++P+ E A
Sbjct:    2 ADVKFSGRAYCKIILHAAKYPHCAINGLLLAEQKPKDSSKSKEIYIVDVVPLFHLCLHVSPMAEVA 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LMA2_ECTSI4.950e-1662.30COX4 neighbour n=1 Tax=Ectocarpus siliculosus TaxI... [more]
L8HJ23_ACACA4.010e-952.63MPN domain-containing protein n=1 Tax=Acanthamoeba... [more]
UPI0005CDEBC55.130e-958.14ER membrane protein complex subunit 8/9 homolog n=... [more]
A0A7M7G728_NASVI3.950e-847.76MPN domain-containing protein n=2 Tax=Pteromalinae... [more]
A0A7S2S5A5_9STRA1.140e-758.00Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A7S2XUU6_9STRA1.370e-749.21Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
UPI0006C98CBB1.430e-760.47ER membrane protein complex subunit 8/9 homolog n=... [more]
UPI00096ADDD43.710e-748.33ER membrane protein complex subunit 8/9 homolog n=... [more]
A0A2R5GCS1_9STRA6.030e-744.44ER membrane protein complex subunit 8 n=1 Tax=Hond... [more]
UPI0006251AF41.080e-645.45ER membrane protein complex subunit 8/9 homolog n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:22916..25271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue8.5e-13
Seed eggNOG ortholog2880.D8LMA2
Preferred nameEMC8
KEGG rclassRC00204
KEGG koko:K01487
KEGG ReactionR01676
KEGG Pathwayko00230,ko01100,map00230,map01100
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0072546,GO:0098796,GO:0098827
EggNOG free text desc.Uncharacterised protein family (UPF0172)
EggNOG OGsKOG3289@1,KOG3289@2759
EC3.5.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCOX4 neighbour
Ec32 orthologEc-05_002070.1
Exons3
Model size240
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20108.1prot_S-ischiensis_contig85.20108.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 22923..25271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.5545824-UTR-S-ischiensis_contig85:22915..229221622817340.5545824-UTR-S-ischiensis_contig85:22915..22922Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 22916..22922 +
1695741040.2801366-UTR-S-ischiensis_contig85:22915..229221695741040.2801366-UTR-S-ischiensis_contig85:22915..22922Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 22916..22922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.5677433-CDS-S-ischiensis_contig85:22922..229731622817340.5677433-CDS-S-ischiensis_contig85:22922..22973Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 22923..22973 +
1695741040.2934716-CDS-S-ischiensis_contig85:22922..229731695741040.2934716-CDS-S-ischiensis_contig85:22922..22973Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 22923..22973 +
1622817340.5794137-CDS-S-ischiensis_contig85:23067..231691622817340.5794137-CDS-S-ischiensis_contig85:23067..23169Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 23068..23169 +
1695741040.3122234-CDS-S-ischiensis_contig85:23067..231691695741040.3122234-CDS-S-ischiensis_contig85:23067..23169Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 23068..23169 +
1622817340.5911007-CDS-S-ischiensis_contig85:25193..252711622817340.5911007-CDS-S-ischiensis_contig85:25193..25271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 25194..25271 +
1695741040.3233712-CDS-S-ischiensis_contig85:25193..252711695741040.3233712-CDS-S-ischiensis_contig85:25193..25271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 25194..25271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20108.1

>prot_S-ischiensis_contig85.20108.1 ID=prot_S-ischiensis_contig85.20108.1|Name=mRNA_S-ischiensis_contig85.20108.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MESPKAESSASGGAGVKVGGKAYLKIMLHAAQHPWASVNGFLLGKGSVAD
ELQVVDVVPLFHTATLAPLLEAAAGMA
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mRNA from alignment at S-ischiensis_contig85:22916..25271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20108.1 ID=mRNA_S-ischiensis_contig85.20108.1|Name=mRNA_S-ischiensis_contig85.20108.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2356bp|location=Sequence derived from alignment at S-ischiensis_contig85:22916..25271+ (Schizocladia ischiensis KU_0333)
AGCTGCGATGGAGTCACCCAAGGCGGAGAGCAGTGCTTCTGGCGGTGCGG
GCGTGAAGGTAGCACACCCACTCGGAGCGGTGCGTGTTTTGGAGGGCCCA
CCCCGGATGTGGAATTCCTAACCCCCGCCAGTGGCCCTCGTTCCCCGTGC
AGGTGGGAGGGAAAGCTTACTTGAAAATCATGCTCCACGCTGCCCAGCAC
CCTTGGGCGTCGGTGAATGGATTTCTTCTGGGCAAGGGATCCGTTGCCGA
CGAGGTGAGGTTGTTGGCTGGGGTGTTGTACCAAGCTGATCAAGCTGCCA
TCTTGATAGGGTACAAGTAGAAGCAGACACCTGCAAGACCACGTCCCGGG
CTGGTGGCCTTGTGTGCAATTATCCCACAAACTCTCTTTTCATTGGCGAC
CTTCCGATTCCAGACAAAAAACTCGACGATTCTGGGCTCTCTACTAGTAG
CCCGGTGCCGCCGATTGTTTTCGGTGTTTTTGGCCCTTTTAGGCCAAATC
TGGGCGATTTGCGCCCATTTTGCCAAGGGGTCGTGCAAGCCCTGCTCGGG
GCCTTATGGGGGACCCTGAATAGCCCCTGCGACCACGGAGCGGCGGAGAC
GCGATCAATCGATTTGAGGGACTTAGCATGCCCTGGCTGGGGGGATGCGC
TTGGACTCAAGTGACCCGTTTTGTTGCCACGCAAGCATGCCGTCACACGT
CCCTATGCCTGTGCCTGTGCCTGTGCCTACCGGAGAAAAGGGGGAAGGGG
GCGCTGAAATTCGGCCTTGACCGCCTGTCAGGTCGTCAGAGGCGTATGTA
TGCGCTACAGTACCCGTGGCAATGACAACCGCCACGCCGGAGACATGGAT
GATTCCTTGGAGGTTACGGGCGTGTTGCTTTCCTGTACTATGTAGAGTAC
TTGCGCAATACTGTACACTTCCAAGTACAGCTGGTAGAGTAGGTATACTA
CTTAGGAAGGGCATAATTAACAAGACCTGGCGATTCCCAAATTCGTAGCT
TGTGAACGAGCCGAGTCAGTTGGCGTGCGATAGCTCGTTCGAAAGGTCTG
GCCGAGCGCTCGATGCCTGTACAATTTCGCGATCCGATTAGCTGTCGTTC
CCGAGCTATCGCGTTATTTATCGTCGAAACTCGCCGAAACCAGCCGTTGC
CGGCTAAATCCGGAAGTGTCCGAAACTCAAATCACTTGATTAATGAACCG
GCCTCGCCGGCGACCGGGTTTTTGCTGTTCGAACGTCGATGACTCACGAA
CGAGGCAACGAATCGAAAAACCGCGAACGTCACCCACTAGGGGCCGAGGT
GGAGGGCACGTGGGAAAAAGTCCCACCCCCGCGCGACGCGATGCGCCGGA
GAACAGTTGTGCTCCGTTTGGGCAATTTCCGGCACTTTTAGACCTCATCC
CCCCTCCTTCTGAGGGCTGTAGCTTTGGAACGGCAGCTCTGATCACCGTC
AAATAAAGTGCGATAGCTCCAGCAAGTCCCGAGGATCAAACTTCAGTACT
GGACCTTGCCGCGATTCCTTCCCGTTGCGGCGCAATGTATTTTTTTATGA
TCAACTTTTCTTTTTCGCCGTCGGGCGCCAAATTCGGCCTATAAATGCCG
TTTTTAGTCTTATTAACTATGCCCTTCCGTAGTACGTGGCTGTTGGTAGC
ACCAGCACTGTCTGAACAGGGAGGTGGGTGGTTGCAGGTCCTCCACCACA
GAACACCAATGTACTTCGAAGTACAAACTTTGCACCCTGCTGAACTGTAC
TGTGCTGTGTGTAGCTTGGAAGGAGCAGTCACACTTGAGTCGAGATATCT
TATTTATCACTCTGAGGGCTCCGTGGGCAAGGTGAATTTTAACCCTAACT
TTGCTTTGCCTGCGGTTGACTATCGCGCCCACCTGCCACCAGCTGCGAAG
AGCTGTTGGGGGCGGGCGTTCGCAGAAGTGCCGACGTGTCATGAAGTGAT
CAATGCCGTCTGAGTGACTGGCGCGGAACTTACGGTACGGAGCCCGCCTA
AATACCGTACTCTACTGTACTGTACTGTACTGACTGGGTGGTGCGCTGTG
CGATACAGTACTGTAGACAATCTGTATTTGCATATGCACCAGCTGATGAA
TGAATTCCCGGTATCCCGAATGAGGCAGAATTACTGTAGTACTCGAGTAA
ACTTCTCGCACTGTATGCCAAGCGTCTGGACCGACTTCCTGGCTGAGTGA
CTACTACTATACGAGTACTAGTACTAGCATGCCTGGCATGACCGGTGTGC
CTGTGCCTGTCCTTCTGCCCGCAAGCAGTTGCAAGTGGTGGATGTGGTGC
CGCTATTCCACACGGCCACCCTGGCCCCGCTGCTGGAGGCGGCGGCGGGC
ATGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:22916..25271+

>mRNA_S-ischiensis_contig85.20108.1 ID=mRNA_S-ischiensis_contig85.20108.1|Name=mRNA_S-ischiensis_contig85.20108.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig85:22916..25271+ (Schizocladia ischiensis KU_0333)
ATGGAGTCACCCAAGGCGGAGAGCAGTGCTTCTGGCGGTGCGGGCGTGAA
GATGGAGTCACCCAAGGCGGAGAGCAGTGCTTCTGGCGGTGCGGGCGTGA
AGGTGGGAGGGAAAGCTTACTTGAAAATCATGCTCCACGCTGCCCAGCAC
CCTTGGGCGTCGGTGAATGGATTTCTTCTGGGCAAGGGATCCGTTGCCGA
CGAGGTGGGAGGGAAAGCTTACTTGAAAATCATGCTCCACGCTGCCCAGC
ACCCTTGGGCGTCGGTGAATGGATTTCTTCTGGGCAAGGGATCCGTTGCC
GACGAGTTGCAAGTGGTGGATGTGGTGCCGCTATTCCACACGGCCACCCT
GGCCCCGCTGCTGGAGGCGGCGGCGGGCATGGCTTTGCAAGTGGTGGATG
TGGTGCCGCTATTCCACACGGCCACCCTGGCCCCGCTGCTGGAGGCGGCG
GCGGGCATGGCT
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