mRNA_S-ischiensis_contig84.20106.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20106.1
Unique NamemRNA_S-ischiensis_contig84.20106.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20106.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.140e-15
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:    2 HVVVYCPFWMVNTSPYRLRYRQDGSKNLPAGTVSKAGDGRRSIYATDAWGP 154
            +V VYCP WMVNTS YRLRYRQDG + +PAGTVSKAGDG+R IY  D  GP
Sbjct: 4934 NVTVYCPVWMVNTSHYRLRYRQDGQRQMPAGTVSKAGDGQRPIYENDCPGP 4984
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI3.140e-1572.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:669723..670616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.686145-CDS-S-ischiensis_contig84:669722..6697791622817333.686145-CDS-S-ischiensis_contig84:669722..669779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 669723..669779 +
1695741034.9775403-CDS-S-ischiensis_contig84:669722..6697791695741034.9775403-CDS-S-ischiensis_contig84:669722..669779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 669723..669779 +
1622817333.6985793-CDS-S-ischiensis_contig84:670182..6706141622817333.6985793-CDS-S-ischiensis_contig84:670182..670614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 670183..670614 +
1695741034.9930973-CDS-S-ischiensis_contig84:670182..6706141695741034.9930973-CDS-S-ischiensis_contig84:670182..670614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 670183..670614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20106.1prot_S-ischiensis_contig84.20106.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 669723..670614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20106.1

>prot_S-ischiensis_contig84.20106.1 ID=prot_S-ischiensis_contig84.20106.1|Name=mRNA_S-ischiensis_contig84.20106.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
ARGGVLPVLDGEYVSVPAQVSPGRQQEPAGRHREQGWRWQAFYLRHGRLG
PGRRLAAQQLGPQPQAQRRRRRRRQRRRRFLWPSGRRRWRHCRRPGRRGR
HRREKQSSSRRQQPRGAQRRRGGGAHVHARPGRSRRVRSRGSPAAAGVRR
DAGAHVRTWAATA
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mRNA from alignment at S-ischiensis_contig84:669723..670616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20106.1 ID=mRNA_S-ischiensis_contig84.20106.1|Name=mRNA_S-ischiensis_contig84.20106.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig84:669723..670616+ (Schizocladia ischiensis KU_0333)
GCACGTGGTGGTGTACTGCCCGTTTTGGATGGTGAATACGTCTCCGTACC
GGCTCAGGTGTGTGTGTGTGTGGGTGCGTGCGTGTGTCTGTGTGTGTGTG
TGCGCGCGCGTGGAAGCGGGCGTGTGCATGCCCGCATGCAACCGCAAGTA
TCTACCTGCACACGGTCAGAAGTATGTACTTCGAAGTATGTGTGCTTCTG
GACTGTGCCCCCCCTGCAGAGGTGAGTATGTACTCGTACGAGTGAACACT
CCAAAACACGCTTGGTCCACAAGCTCCGAATCTTCCCAGTGGAGGTGATA
AACCGGACTTTTGCCCAGGAACCACTAGGACAGCCCCACCAACACCACCA
CCACCGCCGCCGCCACTCTCCAACACCAACACCACCACCGCCGACACTGC
CCCCACCAACACCACCAACACcgCCGCCGCCGCCACTGCCATGGCGACGA
CCTCCCCCAGGTATCGCCAGGACGGCAGCAAGAACCTGCCGGCCGGCACC
GTGAGCAAGGCTGGAGATGGCAGGCGTTCTATCTACGCCACGGACGCCTG
GGGCCCGGGCGGCGACTCGCCGCCCAACAGCTGGGGCCCCAGCCCCAGGC
CCAGCGGCGGCGGCGGCGGCGGCGGCAGCGGAGGCGGAGGTTTCTTTGGC
CAAGCGGTCGCCGGCGATGGCGGCATTGCCGGCGACCGGGACGGCGGGGA
CGGCACCGGCGGGAAAAGCAATCATCATCGCGCCGGCAACAACCGCGGGG
GGCTCAACGGCGGCGTGGGGGAGGGGCACATGTCCACGCTCGGCCTGGAC
GATCCAGACGGGTCCGCAGCCGGGGTTCCCCAGCTGCGGCGGGCGTTCGC
CGGGATGCCGGGGCTCATGTCAGGACCTGGGCGGCGACCGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:669723..670616+

>mRNA_S-ischiensis_contig84.20106.1 ID=mRNA_S-ischiensis_contig84.20106.1|Name=mRNA_S-ischiensis_contig84.20106.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig84:669723..670616+ (Schizocladia ischiensis KU_0333)
GCACGTGGTGGTGTACTGCCCGTTTTGGATGGTGAATACGTCTCCGTACC
GGCTCAGGCACGTGGTGGTGTACTGCCCGTTTTGGATGGTGAATACGTCT
CCGTACCGGCTCAGGTATCGCCAGGACGGCAGCAAGAACCTGCCGGCCGG
CACCGTGAGCAAGGCTGGAGATGGCAGGCGTTCTATCTACGCCACGGACG
CCTGGGGCCCGGGCGGCGACTCGCCGCCCAACAGCTGGGGCCCCAGCCCC
AGGCCCAGCGGCGGCGGCGGCGGCGGCGGCAGCGGAGGCGGAGGTTTCTT
TGGCCAAGCGGTCGCCGGCGATGGCGGCATTGCCGGCGACCGGGACGGCG
GGGACGGCACCGGCGGGAAAAGCAATCATCATCGCGCCGGCAACAACCGC
GGGGGGCTCAACGGCGGCGTGGGGGAGGGGCACATGTCCACGCTCGGCCT
GGACGATCCAGACGGGTCCGCAGCCGGGGTTCCCCAGCTGCGGCGGGCGT
TCGCCGGGATGCCGGGGCTCATGTCAGGACCTGGGCGGCGACCGCCGTAT
CGCCAGGACGGCAGCAAGAACCTGCCGGCCGGCACCGTGAGCAAGGCTGG
AGATGGCAGGCGTTCTATCTACGCCACGGACGCCTGGGGCCCGGGCGGCG
ACTCGCCGCCCAACAGCTGGGGCCCCAGCCCCAGGCCCAGCGGCGGCGGC
GGCGGCGGCGGCAGCGGAGGCGGAGGTTTCTTTGGCCAAGCGGTCGCCGG
CGATGGCGGCATTGCCGGCGACCGGGACGGCGGGGACGGCACCGGCGGGA
AAAGCAATCATCATCGCGCCGGCAACAACCGCGGGGGGCTCAACGGCGGC
GTGGGGGAGGGGCACATGTCCACGCTCGGCCTGGACGATCCAGACGGGTC
CGCAGCCGGGGTTCCCCAGCTGCGGCGGGCGTTCGCCGGGATGCCGGGGC
TCATGTCAGGACCTGGGCGGCGACCGCC
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