mRNA_S-ischiensis_contig84.20102.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20102.1
Unique NamemRNA_S-ischiensis_contig84.20102.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20102.1 vs. uniprot
Match: A0A6H5L016_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L016_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.460e-12
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   43 GFDGTPLRAEDVQVLVGEPAALQPLDEPDRDLGPRAGDVVTSYDDLVFAAASLVVFLGPQEPPS 234
            GF+  PL    + + + +P A+   + P  DLGPRAGD+V S +DLVFAAAS +VFLGP  PP+
Sbjct:   97 GFEAPPLDPAKLHLRLRQPCAVPAQEHPSMDLGPRAGDIVASVEDLVFAAASAMVFLGPNPPPT 160
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BLAST of mRNA_S-ischiensis_contig84.20102.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 9.230e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   43 GFDGTPLRAEDVQVLVGEPAALQPLDEPDRDLGPRAGDVVTSYDDLVFAAASLVVFLGPQEPP 231
            GF+   L    + + + +P A+   + P  DLGPRAGD+V S +DLVFAAAS +VFLGP  PP
Sbjct: 3320 GFEAPSLDPAKLHLRLRQPCAVPAQEHPSMDLGPRAGDIVASVEDLVFAAASAMVFLGPNPPP 3382
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L016_9PHAE5.460e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8Y9_ECTSI9.230e-1149.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:664217..664581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.9504812-CDS-S-ischiensis_contig84:664216..6642971622817338.9504812-CDS-S-ischiensis_contig84:664216..664297Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 664217..664297 +
1695741039.3139317-CDS-S-ischiensis_contig84:664216..6642971695741039.3139317-CDS-S-ischiensis_contig84:664216..664297Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 664217..664297 +
1622817338.9630697-CDS-S-ischiensis_contig84:664428..6645811622817338.9630697-CDS-S-ischiensis_contig84:664428..664581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 664429..664581 +
1695741039.327231-CDS-S-ischiensis_contig84:664428..6645811695741039.327231-CDS-S-ischiensis_contig84:664428..664581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 664429..664581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20102.1prot_S-ischiensis_contig84.20102.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 664217..664581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20102.1

>prot_S-ischiensis_contig84.20102.1 ID=prot_S-ischiensis_contig84.20102.1|Name=mRNA_S-ischiensis_contig84.20102.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp
VGRPRGRSGRGSKWGFDGTPLRAEDVQVLVGEPAALQPLDEPDRDLGPRA
GDVVTSYDDLVFAAASLVVFLGPQEPPS
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mRNA from alignment at S-ischiensis_contig84:664217..664581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20102.1 ID=mRNA_S-ischiensis_contig84.20102.1|Name=mRNA_S-ischiensis_contig84.20102.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=365bp|location=Sequence derived from alignment at S-ischiensis_contig84:664217..664581+ (Schizocladia ischiensis KU_0333)
GTGGGGCGACCTCGAGGCCGCAGCGGCAGGGGGAGCAAGTGGGGCTTCGA
CGGCACCCCCCTGCGTGCGGAGGACGTGCAGGTAGCCATGGTACTACAAA
AGTGCGTTTTTTTTTGCCCAAATAGAAGTAATTTTTTTTGCGATATCAAA
ATTTTCGCCCGAATTGCTGTTGTTTCAATGTCGCACTTTTTTCTTACCAT
GGTTGCGTGCAGGTGCTGGTCGGGGAGCCCGCGGCCCTCCAGCCGCTGGA
CGAGCCGGACCGGGACCTGGGCCCGCGGGCCGGTGACGTCGTGACCTCGT
ACGACGACCTGGTCTTCGCCGCCGCCTCCCTCGTCGTCTTCCTGGGCCCG
CAGGAGCCGCCCTCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:664217..664581+

>mRNA_S-ischiensis_contig84.20102.1 ID=mRNA_S-ischiensis_contig84.20102.1|Name=mRNA_S-ischiensis_contig84.20102.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig84:664217..664581+ (Schizocladia ischiensis KU_0333)
GTGGGGCGACCTCGAGGCCGCAGCGGCAGGGGGAGCAAGTGGGGCTTCGA
CGGCACCCCCCTGCGTGCGGAGGACGTGCAGGTGGGGCGACCTCGAGGCC
GCAGCGGCAGGGGGAGCAAGTGGGGCTTCGACGGCACCCCCCTGCGTGCG
GAGGACGTGCAGGTGCTGGTCGGGGAGCCCGCGGCCCTCCAGCCGCTGGA
CGAGCCGGACCGGGACCTGGGCCCGCGGGCCGGTGACGTCGTGACCTCGT
ACGACGACCTGGTCTTCGCCGCCGCCTCCCTCGTCGTCTTCCTGGGCCCG
CAGGAGCCGCCCTCAGTGCTGGTCGGGGAGCCCGCGGCCCTCCAGCCGCT
GGACGAGCCGGACCGGGACCTGGGCCCGCGGGCCGGTGACGTCGTGACCT
CGTACGACGACCTGGTCTTCGCCGCCGCCTCCCTCGTCGTCTTCCTGGGC
CCGCAGGAGCCGCCCTCA
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