mRNA_S-ischiensis_contig84.20093.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20093.1
Unique NamemRNA_S-ischiensis_contig84.20093.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:652668..654188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size994
Cds size993
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.523158-CDS-S-ischiensis_contig84:652667..6529731622817333.523158-CDS-S-ischiensis_contig84:652667..652973Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 652668..652973 +
1695741034.8814452-CDS-S-ischiensis_contig84:652667..6529731695741034.8814452-CDS-S-ischiensis_contig84:652667..652973Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 652668..652973 +
1622817333.5342867-CDS-S-ischiensis_contig84:653501..6541881622817333.5342867-CDS-S-ischiensis_contig84:653501..654188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 653502..654188 +
1695741034.8957446-CDS-S-ischiensis_contig84:653501..6541881695741034.8957446-CDS-S-ischiensis_contig84:653501..654188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 653502..654188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20093.1prot_S-ischiensis_contig84.20093.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 652668..654188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20093.1

>prot_S-ischiensis_contig84.20093.1 ID=prot_S-ischiensis_contig84.20093.1|Name=mRNA_S-ischiensis_contig84.20093.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=331bp
YEDAEEEEEEEKVPDVQGGPAMLPVFTGSGPGAAGAGSGAGPGATAGPGA
AGPGPRAGEGGAAADWSLGWGGEALFTRCLVEGHPGHPRQRIDAWLGRAS
VEISDVAVAAAARAAAAISLALASATPAGATLPESSCSPRQQRQRHRQRP
LSGGSSATAGESRSGASSSTPSPQHAIQPPRMKLLSGLTSLKLSVALEGA
DAWFLSPTGIPPPRRPRPWQQTSPLLVDPMPAAAAAGAGPYGPEVSSSSP
YGEEEDDDGAPPGAPAAAAGYKGGSYGGFADPYGREERVLARRRRSLLRM
ARQVQERGPQQHDGEGESPGWAQACRLFRDE
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mRNA from alignment at S-ischiensis_contig84:652668..654188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20093.1 ID=mRNA_S-ischiensis_contig84.20093.1|Name=mRNA_S-ischiensis_contig84.20093.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1521bp|location=Sequence derived from alignment at S-ischiensis_contig84:652668..654188+ (Schizocladia ischiensis KU_0333)
TACGAGGATGCGGAGGAGGAGGAGGAGGAGGAGAAGGTGCCTGACGTCCA
GGGAGGCCCCGCCATGTTGCCCGTCTTCACGGGGTCCGGGCCCGGGGCCG
CTGGGGCCGGGAGTGGCGCTGGGCCCGGAGCCACTGCTGGGCCCGGGGCC
GCCGGACCGGGCCCACGGGCAGGAGAAGGAGGGGCGGCGGCGGACTGGAG
CCTGGGCTGGGGGGGCGAGGCGCTCTTCACGCGGTGCTTGGTTGAGGGTC
ACCCGGGCCACCCGCGGCAGCGGATAGACGCCTGGCTGGGTCGGGCGAGC
GTGGAGGTGAGGGCCATCCAGTGGCAAGGATGTGGTATCCTTTGAAGTAC
TCGAGTACTCGAGTACGAGTATATGGCAAAATTCCAGTTCGTGTGCCCTG
TACTACTGTGCTGTGCTGTGCTGTGCTACACTGTACTGTACTGTACTGTA
CCGCACTGTGCGCTGCTGTACTCTACGATACTGTGCTGTGCTGTACTGTG
ATGTACTGTGCTGTGCTGCACTGTACTCTACTGTGCTACAGTAGCGTAAG
CCGTGTGCAAGTTCTTCAAGCACGGTATATACCAGCCCCCATGAGCAGTG
TCACGCACAGGCCGGGGTGCTTAGCTCCCTGTCCGACGTGGGCAAGCACG
TCCAAGGACACTCGTGCAGAGTTCCCTTGCGCTGTCAACCCTGCCCTGAA
ATAACCCTCTGCCTACAGATAGGCCGGGGTACTTAGCTCCCTGTCCGGCG
TGAGTAAGTACTTCCAAGTACACTCATGCGGAGTCCCCTTGCGCTGTCAT
CAACCCCCCCCCTGAAACAACCCTCTACCTACAGATATCAGACGTCGCAG
TGGCGGCGGCAGCACGGGCAGCGGCCGCGATATCGCTGGCACTGGCCTCG
GCCACCCCAGCCGGTGCCACTCTCCCCGAATCGAGCTGCAGCCCCCGCCA
GCAGCGACAACGCCACCGACAACGACCCCTGAGCGGCGGCTCCTCCGCTA
CCGCCGGCGAAAGCAGAAGCGGTGCGAGCAGCAGCACCCCCTCCCCGCAA
CACGCCATCCAGCCCCCCCGCATGAAGCTTCTCAGCGGCCTCACGAGCCT
GAAACTGTCCGTGGCGCTGGAGGGCGCGGACGCCTGGTTCCTGTCGCCCA
CCGGAATCCCCCCGCCGCGGCGGCCACGGCCGTGGCAACAAACCTCCCCC
CTCCTCGTCGATCCCATGCCCGCGGCCGCGGCGGCGGGCGCGGGGCCATA
CGGACCGGAGGTCTCCTCCTCCTCGCCATATGGCGAGGAGGAGGACGACG
ACGGGGCCCCTCCTGGTGCCCCGGCGGCGGCGGCGGGATACAAGGGAGGC
AGTTACGGCGGTTTCGCCGACCCCTATGGCAGGGAGGAGCGCGTCTTGGC
CCGGCGGCGCCGGAGCCTGCTGCGCATGGCGCGGCAGGTCCAGGAGCGGG
GGCCGCAGCAGCACGACGGGGAGGGGGAGTCTCCGGGGTGGGCGCAGGCG
TGCAGGCTGTTCCGGGACGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:652668..654188+

>mRNA_S-ischiensis_contig84.20093.1 ID=mRNA_S-ischiensis_contig84.20093.1|Name=mRNA_S-ischiensis_contig84.20093.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1986bp|location=Sequence derived from alignment at S-ischiensis_contig84:652668..654188+ (Schizocladia ischiensis KU_0333)
TACGAGGATGCGGAGGAGGAGGAGGAGGAGGAGAAGGTGCCTGACGTCCA
GGGAGGCCCCGCCATGTTGCCCGTCTTCACGGGGTCCGGGCCCGGGGCCG
CTGGGGCCGGGAGTGGCGCTGGGCCCGGAGCCACTGCTGGGCCCGGGGCC
GCCGGACCGGGCCCACGGGCAGGAGAAGGAGGGGCGGCGGCGGACTGGAG
CCTGGGCTGGGGGGGCGAGGCGCTCTTCACGCGGTGCTTGGTTGAGGGTC
ACCCGGGCCACCCGCGGCAGCGGATAGACGCCTGGCTGGGTCGGGCGAGC
GTGGAGTACGAGGATGCGGAGGAGGAGGAGGAGGAGGAGAAGGTGCCTGA
CGTCCAGGGAGGCCCCGCCATGTTGCCCGTCTTCACGGGGTCCGGGCCCG
GGGCCGCTGGGGCCGGGAGTGGCGCTGGGCCCGGAGCCACTGCTGGGCCC
GGGGCCGCCGGACCGGGCCCACGGGCAGGAGAAGGAGGGGCGGCGGCGGA
CTGGAGCCTGGGCTGGGGGGGCGAGGCGCTCTTCACGCGGTGCTTGGTTG
AGGGTCACCCGGGCCACCCGCGGCAGCGGATAGACGCCTGGCTGGGTCGG
GCGAGCGTGGAGATATCAGACGTCGCAGTGGCGGCGGCAGCACGGGCAGC
GGCCGCGATATCGCTGGCACTGGCCTCGGCCACCCCAGCCGGTGCCACTC
TCCCCGAATCGAGCTGCAGCCCCCGCCAGCAGCGACAACGCCACCGACAA
CGACCCCTGAGCGGCGGCTCCTCCGCTACCGCCGGCGAAAGCAGAAGCGG
TGCGAGCAGCAGCACCCCCTCCCCGCAACACGCCATCCAGCCCCCCCGCA
TGAAGCTTCTCAGCGGCCTCACGAGCCTGAAACTGTCCGTGGCGCTGGAG
GGCGCGGACGCCTGGTTCCTGTCGCCCACCGGAATCCCCCCGCCGCGGCG
GCCACGGCCGTGGCAACAAACCTCCCCCCTCCTCGTCGATCCCATGCCCG
CGGCCGCGGCGGCGGGCGCGGGGCCATACGGACCGGAGGTCTCCTCCTCC
TCGCCATATGGCGAGGAGGAGGACGACGACGGGGCCCCTCCTGGTGCCCC
GGCGGCGGCGGCGGGATACAAGGGAGGCAGTTACGGCGGTTTCGCCGACC
CCTATGGCAGGGAGGAGCGCGTCTTGGCCCGGCGGCGCCGGAGCCTGCTG
CGCATGGCGCGGCAGGTCCAGGAGCGGGGGCCGCAGCAGCACGACGGGGA
GGGGGAGTCTCCGGGGTGGGCGCAGGCGTGCAGGCTGTTCCGGGACGAGA
TATCAGACGTCGCAGTGGCGGCGGCAGCACGGGCAGCGGCCGCGATATCG
CTGGCACTGGCCTCGGCCACCCCAGCCGGTGCCACTCTCCCCGAATCGAG
CTGCAGCCCCCGCCAGCAGCGACAACGCCACCGACAACGACCCCTGAGCG
GCGGCTCCTCCGCTACCGCCGGCGAAAGCAGAAGCGGTGCGAGCAGCAGC
ACCCCCTCCCCGCAACACGCCATCCAGCCCCCCCGCATGAAGCTTCTCAG
CGGCCTCACGAGCCTGAAACTGTCCGTGGCGCTGGAGGGCGCGGACGCCT
GGTTCCTGTCGCCCACCGGAATCCCCCCGCCGCGGCGGCCACGGCCGTGG
CAACAAACCTCCCCCCTCCTCGTCGATCCCATGCCCGCGGCCGCGGCGGC
GGGCGCGGGGCCATACGGACCGGAGGTCTCCTCCTCCTCGCCATATGGCG
AGGAGGAGGACGACGACGGGGCCCCTCCTGGTGCCCCGGCGGCGGCGGCG
GGATACAAGGGAGGCAGTTACGGCGGTTTCGCCGACCCCTATGGCAGGGA
GGAGCGCGTCTTGGCCCGGCGGCGCCGGAGCCTGCTGCGCATGGCGCGGC
AGGTCCAGGAGCGGGGGCCGCAGCAGCACGACGGGGAGGGGGAGTCTCCG
GGGTGGGCGCAGGCGTGCAGGCTGTTCCGGGACGAG
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