mRNA_S-ischiensis_contig84.20091.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20091.1
Unique NamemRNA_S-ischiensis_contig84.20091.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:650133..650672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size152
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.4818537-CDS-S-ischiensis_contig84:650132..6502301622817333.4818537-CDS-S-ischiensis_contig84:650132..650230Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 650133..650230 +
1695741034.8597963-CDS-S-ischiensis_contig84:650132..6502301695741034.8597963-CDS-S-ischiensis_contig84:650132..650230Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 650133..650230 +
1622817333.4932735-CDS-S-ischiensis_contig84:650618..6506701622817333.4932735-CDS-S-ischiensis_contig84:650618..650670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 650619..650670 +
1695741034.8704696-CDS-S-ischiensis_contig84:650618..6506701695741034.8704696-CDS-S-ischiensis_contig84:650618..650670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 650619..650670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20091.1prot_S-ischiensis_contig84.20091.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 650133..650670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20091.1

>prot_S-ischiensis_contig84.20091.1 ID=prot_S-ischiensis_contig84.20091.1|Name=mRNA_S-ischiensis_contig84.20091.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=50bp
TWRTHGGGACRCRCPAGSFRTCWRWRTASRWSRCCCTAGWRGQGPRRRRR
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mRNA from alignment at S-ischiensis_contig84:650133..650672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20091.1 ID=mRNA_S-ischiensis_contig84.20091.1|Name=mRNA_S-ischiensis_contig84.20091.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig84:650133..650672+ (Schizocladia ischiensis KU_0333)
ACGTGGAGGACGCACGGAGGCGGGGCCTGCCGCTGTCGCTGTCCCGCGGG
GAGTTTCAGGACCTGCTGGCGCTGGAGGACTGCCTCTCGGTGGAGCAGGT
GCAGTGATGGAATATACTTCGAAGTATAGGGCTTCGCCCCCGCCTGCCCC
ACCCGCGTGCCCCACTGTGAGCACAAGAGACTCCCCTTTCCCGTCCCTTT
CCTTCTTTGTTTTTATTTTCTTCTTGTCCTGCGTTGGGAAGGAAGGGCCT
CGTTGAGTCCCGTTTCGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCG
CCGCTTATCTACCACTCAACTACGGAAATCAACCTATTTGTCGACAGTAC
TGATCTATACATCTATCGATATTCGATGTTCGATAGTTTGACCCGCACTA
AATCCGAGTAGTTAGTAGCGCCGCCCACAAAACCGAGTCGAGCCCGATAG
CTATCTACGATCGATATTTATTCCATCACTGAGCAGGTGCTGCTGTACCG
CGGGGTGGCGCGGACAAGGGCCGAGGCGGAGGAGGAGAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:650133..650672+

>mRNA_S-ischiensis_contig84.20091.1 ID=mRNA_S-ischiensis_contig84.20091.1|Name=mRNA_S-ischiensis_contig84.20091.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=300bp|location=Sequence derived from alignment at S-ischiensis_contig84:650133..650672+ (Schizocladia ischiensis KU_0333)
ACGTGGAGGACGCACGGAGGCGGGGCCTGCCGCTGTCGCTGTCCCGCGGG
GAGTTTCAGGACCTGCTGGCGCTGGAGGACTGCCTCTCGGTGGAGCAGAC
GTGGAGGACGCACGGAGGCGGGGCCTGCCGCTGTCGCTGTCCCGCGGGGA
GTTTCAGGACCTGCTGGCGCTGGAGGACTGCCTCTCGGTGGAGCAGGTGC
TGCTGTACCGCGGGGTGGCGCGGACAAGGGCCGAGGCGGAGGAGGAGAGT
GCTGCTGTACCGCGGGGTGGCGCGGACAAGGGCCGAGGCGGAGGAGGAGA
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