mRNA_S-ischiensis_contig84.20090.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20090.1
Unique NamemRNA_S-ischiensis_contig84.20090.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.230e-27
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:   19 LLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLLIFGMEGPEPTPA-ATQDQGPGLTLDSSPRQS 417
            L+  ++ VEAV+L +  RQY VLN  +SA  MS RRF+FR +RPT +VL+DP+AWW YA RCV  E R  A +G+AG +L W G I   +  +RYM +YRRLL  GM     T A AT    P  T  ++P +S
Sbjct:  383 LVSVSLDVEAVALQVDVRQYAVLNAAVSALTMSHRRFKFRTMRPTTSVLDDPEAWWRYAIRCVMIEQRRDAHRGSAGPSLTWQGLISRVRLLSRYMSVYRRLLTVGMRPLHATTARATAAPAPVTTARNTPPRS 516
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.730e-27
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:   19 LLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLLIFGMEGPEPTPA-ATQDQGPGLTLDSSPRQS 417
            L+  ++ VEAV+L +  RQY VLN  +SA  MS RRF+FR +RPT +VL+DP+AWW YA RCV  E R  A +G+AG +L W G I   +  +RYM +YRRLL  GM     T A AT    P  T  ++P +S
Sbjct:  438 LVSVSLDVEAVALQVDVRQYAVLNAAVSALTMSHRRFKFRTMRPTTSVLDDPEAWWRYAIRCVMIEQRRDAHRGSAGLSLTWQGLISRVRLLSRYMSVYRRLLTVGMRPLHATTAPATAAPAPVTTARNTPPRS 571
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A452YV23_AEGTS (VPS13 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YV23_AEGTS)

HSP 1 Score: 61.6 bits (148), Expect = 7.690e-8
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLLIFGMEGP 348
            G AL  AAV ++ V+L LS   Y  +       +   +R R+   RP+  V  DP AWW YA++ VT E++ A+       +L+W   +  A+ +  Y+ LY  LL   M  P
Sbjct:   44 GQALQNAAVDLDDVTLSLSKDGYRDILKMADNFSSFNQRLRYAHYRPSLPVKSDPKAWWKYAYKVVTHEMKKAS------GSLSWEQLLRNARLRKTYVSLYASLLKSDMSRP 150
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A452YV27_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YV27_AEGTS)

HSP 1 Score: 61.6 bits (148), Expect = 1.240e-7
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLLIFGMEGP 348
            G AL  AAV ++ V+L LS   Y  +       +   +R R+   RP+  V  DP AWW YA++ VT E++ A+       +L+W   +  A+ +  Y+ LY  LL   M  P
Sbjct:  269 GQALQNAAVDLDDVTLSLSKDGYRDILKMADNFSSFNQRLRYAHYRPSLPVKSDPKAWWKYAYKVVTHEMKKAS------GSLSWEQLLRNARLRKTYVSLYASLLKSDMSRP 375
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: M8C884_AEGTA (PH domain-containing protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8C884_AEGTA)

HSP 1 Score: 61.6 bits (148), Expect = 1.470e-7
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLLIFGMEGP 348
            G AL  AAV ++ V+L LS   Y  +       +   +R R+   RP+  V  DP AWW YA++ VT E++ A+       +L+W   +  A+ +  Y+ LY  LL   M  P
Sbjct:  276 GQALQNAAVDLDDVTLSLSKDGYRDILKMADNFSSFNQRLRYAHYRPSLPVKSDPKAWWKYAYKVVTHEMKKAS------GSLSWEQLLRNARLRKTYVSLYASLLKSDMSRP 382
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A3B5Y0E0_WHEAT (Uncharacterized protein n=40 Tax=Triticeae TaxID=147389 RepID=A0A3B5Y0E0_WHEAT)

HSP 1 Score: 61.6 bits (148), Expect = 1.510e-7
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLLIFGMEGP 348
            G AL  AAV ++ V+L LS   Y  +       +   +R R+   RP+  V  DP AWW YA++ VT E++ A+       +L+W   +  A+ +  Y+ LY  LL   M  P
Sbjct:  276 GQALQNAAVDLDDVTLSLSKDGYRDILKMADNFSSFNQRLRYAHYRPSLPVKSDPKAWWKYAYKVVTHEMKKAS------GSLSWEQLLRNARLRKTYVSLYASLLKSDMSRP 382
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A1D6P6R2_MAIZE (Pleckstrin homology (PH) domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6P6R2_MAIZE)

HSP 1 Score: 58.9 bits (141), Expect = 3.160e-7
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLL 327
            G AL   AV ++ V+L LS   Y  +       +   +R R+  LRP+  +  DP AWW YA++ VT E++ A+ +      L+W   +  A+ +  Y+ LY  LL
Sbjct:   77 GQALQNTAVDLDDVTLSLSKDGYRDMLKLADNFSTFNQRLRYAHLRPSSPLKSDPRAWWKYAYKVVTQEMKKASGR------LSWEQLLRNARLRKTYVSLYASLL 176
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BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A5J9V822_9POAL (PH domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V822_9POAL)

HSP 1 Score: 59.7 bits (143), Expect = 6.810e-7
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLL 327
            G AL  AAV ++ V+L LS   Y  +       +   +R R+  LRP+  V  DP AWW YA++ VT E++ A+       +++W   +  A+ +  Y+ LY  LL
Sbjct:  276 GQALQNAAVDLDDVTLSLSKDGYRDILKMADNFSSFNQRLRYAHLRPSLPVKLDPRAWWKYAYKVVTREMKKAS------GSISWEQLLRNARLRKTYVSLYASLL 375
[Close]
BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A1D6P6R3_MAIZE (Pleckstrin homology (PH) domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6P6R3_MAIZE)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-6
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLL 327
            G AL   AV ++ V+L LS   Y  +       +   +R R+  LRP+  +  DP AWW YA++ VT E++ A+ +      L+W   +  A+ +  Y+ LY  LL
Sbjct:  288 GQALQNTAVDLDDVTLSLSKDGYRDMLKLADNFSTFNQRLRYAHLRPSSPLKSDPRAWWKYAYKVVTQEMKKASGR------LSWEQLLRNARLRKTYVSLYASLL 387
[Close]
BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Match: A0A2I0VED0_9ASPA (PH domain-containing protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VED0_9ASPA)

HSP 1 Score: 56.6 bits (135), Expect = 6.830e-6
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:   10 GHALLEAAVWVEAVSLMLSTRQY-EVLNGGLSAAAMSRRRFRFRRLRPTKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQARYMHLYRRLL 327
            G AL +A + ++ V+L LS   + ++L    + AA ++R  ++   RP   V  DP AWW YA++ VT E++ A+ +      L+W   +  A  + RY+ LY  LL
Sbjct:  278 GQALQQAVINLDDVTLCLSKDGFRDILKLADNFAAFNQR-LKYAHYRPQVPVKSDPRAWWTYAYKVVTDEMKKASGK------LSWEDVLRYASIRKRYLSLYASLL 377
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KKF1_9PHAE1.230e-2747.76VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G8Y9_ECTSI1.730e-2747.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A452YV23_AEGTS7.690e-832.74VPS13 domain-containing protein n=1 Tax=Aegilops t... [more]
A0A452YV27_AEGTS1.240e-732.74Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
M8C884_AEGTA1.470e-732.74PH domain-containing protein n=1 Tax=Aegilops taus... [more]
A0A3B5Y0E0_WHEAT1.510e-732.74Uncharacterized protein n=40 Tax=Triticeae TaxID=1... [more]
A0A1D6P6R2_MAIZE3.160e-732.08Pleckstrin homology (PH) domain-containing protein... [more]
A0A5J9V822_9POAL6.810e-733.02PH domain-containing protein n=1 Tax=Eragrostis cu... [more]
A0A1D6P6R3_MAIZE1.240e-632.08Pleckstrin homology (PH) domain-containing protein... [more]
A0A2I0VED0_9ASPA6.830e-632.71PH domain-containing protein n=1 Tax=Dendrobium ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:648268..649883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size613
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.7498443-CDS-S-ischiensis_contig84:648267..6484671622817338.7498443-CDS-S-ischiensis_contig84:648267..648467Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 648268..648467 +
1695741039.2081704-CDS-S-ischiensis_contig84:648267..6484671695741039.2081704-CDS-S-ischiensis_contig84:648267..648467Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 648268..648467 +
1622817338.7636287-CDS-S-ischiensis_contig84:649470..6498821622817338.7636287-CDS-S-ischiensis_contig84:649470..649882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 649471..649882 +
1695741039.2234674-CDS-S-ischiensis_contig84:649470..6498821695741039.2234674-CDS-S-ischiensis_contig84:649470..649882Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 649471..649882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20090.1prot_S-ischiensis_contig84.20090.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 648268..649882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20090.1

>prot_S-ischiensis_contig84.20090.1 ID=prot_S-ischiensis_contig84.20090.1|Name=mRNA_S-ischiensis_contig84.20090.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
HGHGHALLEAAVWVEAVSLMLSTRQYEVLNGGLSAAAMSRRRFRFRRLRP
TKAVLEDPDAWWHYAFRCVTSELRGAARQGTAGSTLNWAGAIDGAKFQAR
YMHLYRRLLIFGMEGPEPTPAATQDQGPGLTLDSSPRQSPGPGAPPLGAK
GLGPASAASPRGQERFSPPGGGTGGYSLPLGRGGGGGGSGGLEGRGGGGS
TSPG
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mRNA from alignment at S-ischiensis_contig84:648268..649883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20090.1 ID=mRNA_S-ischiensis_contig84.20090.1|Name=mRNA_S-ischiensis_contig84.20090.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1616bp|location=Sequence derived from alignment at S-ischiensis_contig84:648268..649883+ (Schizocladia ischiensis KU_0333)
CACGGACACGGACACGCCCTGCTGGAAGCGGCGGTGTGGGTGGAAGCTGT
TTCGTTGATGCTGAGCACCCGGCAGTACGAGGTGCTGAATGGGGGGCTGA
GCGCGGCGGCCATGTCGCGGAGGCGTTTTCGGTTCCGGCGGCTGCGCCCC
ACGAAGGCGGTGCTGGAGGACCCCGACGCGTGGTGGCACTATGCGTTCAG
GTGATTGGTTGTGATTCATATAAATTGTAACGGCCAAGAAGGGCTTCTGG
TGAGGTCCCCACCTTAGGTTGTTCGGACGGGGCCCAGAACTCGCACCCAT
CACAGTAGTTCCAAAATTGTAACGAGGTACAATCGCACATGTGCGCTATT
GAATGTTCTTGTATTAGTGGTTGGTTGATTGTTGGTTGGATTGGCGAGAT
GCTGACTGCACCCACACCACGCCCGTCCGTGATATGCGTAGCGCACGCTT
AGGTGCGGAGTTCGCCGTAACGGCAGTTCAAATAGTGCGGTGGAGGGGGG
AGCCAATCAGACCGTACGTACCTACGGTATCCGAGCCTCCCCAGCGACAT
GTGGAAACTGTGCTCCACATCCCCACTCGGCTCTCTCCCGTGGTACGCCG
CAGCGGCAGTCAAATGGTTGTGTGGCTATGGCGAGCAATGTTGCTCCCTC
CACTTCCACCTCCCTTGCTAGACCGCGTCAACCCCCCAATCCCACATTCC
TCTCCTATACCAATCGCTGCGACAAAGCCAACCACTGTTGCCCAATTGAC
TCATGAGTACCCCCCCCCTTGTGTGGCTACGGTGAGCAATGCTACTCCCT
CCACTTCCCTTGCTAGACTGTGTCAACCCCCCAACCCCACATTCCCCCCT
CGCCTAAACCAATCGCTGCGACGAAGCCAACCACTGTTGCCCAATTGACT
CATGAGTACCCCCCCCCTTGTGTGACTACGGTGAGCAATGCTACTCCCTC
CACTTCCACTTCCCTTGCTAGACCGTGTCAACCCCCCAATCCCACATTCC
CCCCTCGCCTAAACCAATCGCTGGGACCAAGCCAACCACTGTTGTTGCCC
AATTTACCCACGAGTACCCCCACACTCCCCTTCGCCCCCTCTCCCCTCCG
GTCCCTGACCCCCCCCCAAAACGCTGCGCAGCCACTGTTGCCCGATTGCC
TCATAGGTAccCCCCCCTTCGCCCCCTCCCCCCCCCCCTAAACGCCTGCG
CAGGTGCGTGACCAGCGAGCTCCGGGGGGCTGCCCGCCAGGGCACCGCCG
GGTCCACTCTCAACTGGGCCGGCGCCATCGACGGGGCCAAATTTCAGGCC
CGATACATGCACCTCTATCGCCGCCTCCTCATATTCGGGATGGAAGGCCC
AGAGCCCACCCCGGCAGCCACCCAAGACCAGGGCCCGGGCTTGACACTCG
ACTCCTCCCCCCGCCAATCCCCGGGCCCAGGGGCGCCGCCTTTGGGCGCA
AAGGGCCTGGGCCCCGCTTCGGCGGCATCGCCACGGGGGCAGGAGAGGTT
TTCCCCGCCCGGGGGCGGCACCGGCGGATATTCCCTGCCTTTGGGACGCG
GCGGCGGCGGCGGCGGCAGCGGCGGATTAGAAGGGAGGGGGGGAGGAGGG
TCAACTTCGCCAGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:648268..649883+

>mRNA_S-ischiensis_contig84.20090.1 ID=mRNA_S-ischiensis_contig84.20090.1|Name=mRNA_S-ischiensis_contig84.20090.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig84:648268..649883+ (Schizocladia ischiensis KU_0333)
CACGGACACGGACACGCCCTGCTGGAAGCGGCGGTGTGGGTGGAAGCTGT
TTCGTTGATGCTGAGCACCCGGCAGTACGAGGTGCTGAATGGGGGGCTGA
GCGCGGCGGCCATGTCGCGGAGGCGTTTTCGGTTCCGGCGGCTGCGCCCC
ACGAAGGCGGTGCTGGAGGACCCCGACGCGTGGTGGCACTATGCGTTCAG
CACGGACACGGACACGCCCTGCTGGAAGCGGCGGTGTGGGTGGAAGCTGT
TTCGTTGATGCTGAGCACCCGGCAGTACGAGGTGCTGAATGGGGGGCTGA
GCGCGGCGGCCATGTCGCGGAGGCGTTTTCGGTTCCGGCGGCTGCGCCCC
ACGAAGGCGGTGCTGGAGGACCCCGACGCGTGGTGGCACTATGCGTTCAG
GTGCGTGACCAGCGAGCTCCGGGGGGCTGCCCGCCAGGGCACCGCCGGGT
CCACTCTCAACTGGGCCGGCGCCATCGACGGGGCCAAATTTCAGGCCCGA
TACATGCACCTCTATCGCCGCCTCCTCATATTCGGGATGGAAGGCCCAGA
GCCCACCCCGGCAGCCACCCAAGACCAGGGCCCGGGCTTGACACTCGACT
CCTCCCCCCGCCAATCCCCGGGCCCAGGGGCGCCGCCTTTGGGCGCAAAG
GGCCTGGGCCCCGCTTCGGCGGCATCGCCACGGGGGCAGGAGAGGTTTTC
CCCGCCCGGGGGCGGCACCGGCGGATATTCCCTGCCTTTGGGACGCGGCG
GCGGCGGCGGCGGCAGCGGCGGATTAGAAGGGAGGGGGGGAGGAGGGTCA
ACTTCGCCAGGGGTGCGTGACCAGCGAGCTCCGGGGGGCTGCCCGCCAGG
GCACCGCCGGGTCCACTCTCAACTGGGCCGGCGCCATCGACGGGGCCAAA
TTTCAGGCCCGATACATGCACCTCTATCGCCGCCTCCTCATATTCGGGAT
GGAAGGCCCAGAGCCCACCCCGGCAGCCACCCAAGACCAGGGCCCGGGCT
TGACACTCGACTCCTCCCCCCGCCAATCCCCGGGCCCAGGGGCGCCGCCT
TTGGGCGCAAAGGGCCTGGGCCCCGCTTCGGCGGCATCGCCACGGGGGCA
GGAGAGGTTTTCCCCGCCCGGGGGCGGCACCGGCGGATATTCCCTGCCTT
TGGGACGCGGCGGCGGCGGCGGCGGCAGCGGCGGATTAGAAGGGAGGGGG
GGAGGAGGGTCAACTTCGCCAGGG
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