mRNA_S-ischiensis_contig84.20078.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20078.1
Unique NamemRNA_S-ischiensis_contig84.20078.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA)

HSP 1 Score: 229 bits (584), Expect = 8.330e-67
Identity = 124/205 (60.49%), Postives = 151/205 (73.66%), Query Frame = 1
Query:    1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVL 615
            +G+IKKT+L+AF SL   GL + +L  GDEL+ VK C E D++IIGT+QG AVRFAA + QLRP GR +RGVKAMK+   D PVDIDILPG    E   +G S+V VT QGYGKRV + EFK Q RGG GVIA KFK  +  GAA D L  LRV+  GD+++LST QGTIVRQ A  ++ Q RTATGV VQK+DEGDEIA++AV+
Sbjct:  605 RGWIKKTSLAAFQSLTARGLTIISLEDGDELLWVKTCTEADSIIIGTQQGMAVRFAASADQLRPSGRTSRGVKAMKFKPGDYPVDIDILPGADDQELP-DGKSLVAVTVQGYGKRVGADEFKIQRRGGMGVIATKFKTKR--GAAQDALCALRVIANGDQLLLSTAQGTIVRQPAATVSEQGRTATGVRVQKLDEGDEIASIAVV 806          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.170e-58
Identity = 117/226 (51.77%), Postives = 153/226 (67.70%), Query Frame = 1
Query:    1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILP--GGQGSEGDG-----EGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPPMDDIDTDASTAK 657
            +GYIK+T L+AF S    GL++ +L   D L  VK+C ++D ++IG++QGYA RF A+   LRP GR +RGVKAM +  +DVPVDI ++P      + GD      EG S++++TT+GYGKRV   EFKT  RGGKGVIALK +Q        D LAC R+V   DEIMLST QGTIVRQ AG IA QSRTATGV+VQK+D  D I +VA++P + + D  A+T +
Sbjct:  783 KGYIKRTPLAAFRSTSSRGLIIISLGEDDTLRWVKRCCDDDGIVIGSKQGYATRFLANKKDLRPSGRTSRGVKAMNFRDEDVPVDIGVVPREAAAATAGDDAGVKEEGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQK-----LEDTLACFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVALVPEISE-DAAATTGR 1002          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A2W1JRP7_9CYAN (DNA gyrase subunit A n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JRP7_9CYAN)

HSP 1 Score: 197 bits (501), Expect = 6.560e-55
Identity = 111/225 (49.33%), Postives = 145/225 (64.44%), Query Frame = 1
Query:    4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPG----GQGSEGDGE---------------GPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
            GYIKKTALSAFG++R  GL+  +L  GD+L  V++ R ED+++IG+R G A+ F AD  QLRP+GR  RGV++M     D  + IDILP     G    GD                 GP ++++TT GYGKRV   +F+ Q R GKG+IA KFK  KT+  A D+LA LRVVN  DE+ML T +G I+RQA  DI+ QSR+ATGV VQ++D  D IA VA++PP
Sbjct:  626 GYIKKTALSAFGNIRSNGLIAISLEDGDQLRWVRRARVEDSIVIGSRLGMAIHFRADHQQLRPLGRATRGVRSMNLRDGDELIGIDILPSAVIAGLAEAGDDADVDDAVAEDLPDDIPGPWILVITTNGYGKRVPVDQFRLQNRAGKGLIATKFKAKKTKKQADDQLATLRVVNAEDELMLVTSRGVIIRQAVIDISSQSRSATGVRVQRLDADDFIAAVALVPP 850          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A7S2UV19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV19_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.030e-54
Identity = 92/177 (51.98%), Postives = 127/177 (71.75%), Query Frame = 1
Query:   82 GDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAV 612
            GD +  V++C  +D+V+IGT+ GYA RF A+  QLR  GR ++GV+++   K DVPVD+DI+P    ++ + EG  ++ VT+ GYGKRV   EF  Q RGGKGVIA+KF+  + EGA  ++L CLRVV E DE++LST  G IVRQ A  I+ QSR+ATGV++QK+D+ DEI N+AV
Sbjct:    2 GDRVQWVRQCTAQDDVVIGTKNGYATRFKANDEQLRTTGRTSQGVRSINLRKGDVPVDMDIIP----NQEEEEGQMLLAVTSGGYGKRVAVGEFHAQNRGGKGVIAIKFRDGRNEGAHVEKLCCLRVVKEADEVVLSTRSGNIVRQRADQISLQSRSATGVIIQKLDQKDEIINIAV 174          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A7S3XNS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNS8_HETAK)

HSP 1 Score: 185 bits (469), Expect = 1.670e-54
Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 1
Query:    4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLP 618
            G+IK+TALSAF  +   GL   +L  GD L  V +CR+   VIIGT+ G+A RF    ++LR  GR +RGVK+M     D PVD+DILP     + + +   ++++T  G GKRV + EF+ Q RGG GVIA KFK  +T+    D+LACLRVV++ DEI+LST  G IVRQ A DI+ Q R ATGV+VQK+ +GDEI NVAV+P
Sbjct:   84 GWIKRTALSAFQKVTARGLTCISLGDGDRLRHVGRCRDSQTVIIGTQNGFATRF--HMSKLRASGRSSRGVKSMNLRDGDRPVDMDILPD---PDTEADDQQLLLLTRSGLGKRVAATEFRIQGRGGMGVIATKFKARQTD----DKLACLRVVSDNDEIVLSTKGGNIVRQRAADISIQGRAATGVVVQKLVKGDEIVNVAVVP 279          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A3M1KYF0_9CYAN (DNA gyrase subunit A n=1 Tax=Cyanobacteria bacterium J083 TaxID=2420336 RepID=A0A3M1KYF0_9CYAN)

HSP 1 Score: 191 bits (484), Expect = 1.300e-52
Identity = 107/222 (48.20%), Postives = 143/222 (64.41%), Query Frame = 1
Query:    1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPG---------------GQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
            +GYIKKTALSAF ++R  GL+  +LS  D+L  V+  + ED++I+GTRQG A+RF AD+ QLRP+GR  RGV+AMK   +D  + +D+LP                  G+E    GP ++ +TT+GYGKRV    F+ Q R G GV A+KFK  +      DRLA + VV E DE M+ T +G I+RQAA  I+ QSR+ATGV VQK+DE D IA VA++PP
Sbjct:  622 KGYIKKTALSAFHNIRSNGLIAISLSEDDQLRWVRLVKPEDSIIVGTRQGMAIRFLADNQQLRPLGRATRGVRAMKLRGNDEIISMDVLPSQVPATLSEEEEDENEDLGTEVANSGPWLLTITTEGYGKRVPVSRFRLQNRAGMGVRAIKFKNKQ------DRLAAIHVVQEDDEFMIVTNRGIIIRQAANAISPQSRSATGVRVQKLDEDDAIAAVALVPP 837          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6P0QGR2_9CYAN (DNA gyrase subunit A n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QGR2_9CYAN)

HSP 1 Score: 189 bits (480), Expect = 5.140e-52
Identity = 109/235 (46.38%), Postives = 145/235 (61.70%), Query Frame = 1
Query:    1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGG----------QGSEGD------------------GEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
            +GYIKKTAL AFG++R  GL+  +L  GD+L  V++  E D++IIG+R G A+ F  D  QLRP+GR  RGVKAMK  +DD  + +DILPG             SE D                  G+GP +++VT  GYGKRV  K+F+ Q R G G++A KF+  K      D+L+ L VVNEGDE+M+ T +G I+RQ  G I+ QSR ATGV VQ++DE D IA VA++PP
Sbjct:  622 KGYIKKTALDAFGNIRANGLIAISLEEGDQLRWVRRATEADSIIIGSRMGMAIHFKTDHDQLRPLGRATRGVKAMKLKRDDELISMDILPGQVVASLAPVNETESEEDIEELNGAELNGAELVETAGQGPWVLVVTMGGYGKRVPVKQFRLQNRAGMGILATKFRLPK------DKLSSLMVVNEGDELMMVTSRGIIIRQVIGAISPQSRMATGVRVQRLDEDDAIAAVALVPP 850          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: UPI001408D516 (DNA gyrase subunit A n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI001408D516)

HSP 1 Score: 189 bits (479), Expect = 7.040e-52
Identity = 110/238 (46.22%), Postives = 149/238 (62.61%), Query Frame = 1
Query:    4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGG------QGSEGDGE-------------GPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPPMDDIDTDASTAKA 660
            GYIKKTALSAF ++R  GL+   L   D+L  V++ REED +IIGT QG A+ F AD  QLRP+GR  RGVKAMK    D+ + +D++ G       +  E D               GP ++++TTQGYGKRV   +F+ Q R GKGV + KFK+ K +    D +A LR+V+ GDE+ML T +G ++RQA   I+ QSR+ATGV VQ++D  D IA V ++PP +D D DA  A+A
Sbjct:  627 GYIKKTALSAFSNIRTNGLIAIALEEDDQLRWVRRAREEDTIIIGTHQGMAIHFRADHEQLRPLGRATRGVKAMKLKTGDLLIGMDVIAGAVTAGLDETLEEDAPDLEVEEEIIEETAGPWVLVITTQGYGKRVPVSQFRLQRRAGKGVTSTKFKKLKQK----DYVASLRIVHPGDELMLITSRGVVIRQAVDAISSQSRSATGVRVQRLDTEDSIAAVTLVPPSED-DGDAEFAEA 859          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6P0XZA0_9CYAN (DNA gyrase subunit A (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XZA0_9CYAN)

HSP 1 Score: 177 bits (450), Expect = 7.050e-52
Identity = 102/228 (44.74%), Postives = 137/228 (60.09%), Query Frame = 1
Query:    4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPG-------GQGSEGD---------------GEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
            GYIKKTAL+AF  +R  GL+  +L  GD+L  V+  REED++IIG+RQG A+ F AD  QLRP+GR  RGVK+MK    D  + +D+LP            E D               G+GP ++ +T  GYGKRV+ K+F+ Q R G G+  +KF+  +      D L  L VVN+ DE+ML T +G I+RQA   I+ QSR ATGV VQK+D+ D I  VA++PP
Sbjct:   30 GYIKKTALAAFSRIRANGLIAISLEEGDQLRWVRLAREEDSIIIGSRQGMAIHFKADRQQLRPLGRSTRGVKSMKLRSGDEIISMDVLPSQVTAEVASAAEEEDEHLEETNEETTVTEPGQGPWVLAITRGGYGKRVSVKKFRLQNRAGMGLRGMKFRIDR------DELIALHVVNQDDELMLVTNRGIIIRQAVESISSQSRMATGVRVQKLDKDDAIVAVALVPP 251          
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6P0VLR8_9CYAN (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=2 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0VLR8_9CYAN)

HSP 1 Score: 182 bits (463), Expect = 8.350e-52
Identity = 106/229 (46.29%), Postives = 142/229 (62.01%), Query Frame = 1
Query:    1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDIL--------------------PGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPPMD 627
            QGYIKKTAL AF ++R  GL+  +L+ GD+L  V++ + ED+VIIG+RQG A+ F AD  QLRP+GR  RGVKAMK  + D  + +DIL                    PG +      E P +++VT  GYGKRV   +F+ Q R G G++A KF+  K      D+LA LRVVN+GDE+M+ T +G I+RQ    I+ QSR ATGV VQ++DE D IA VA++P  D
Sbjct:  223 QGYIKKTALDAFSNIRTNGLIAISLAEGDQLRWVRRAKAEDSVIIGSRQGMAIHFKADQEQLRPLGRATRGVKAMKLREHDELISMDILSSQVVANLAAASAEDDSQELPGEEVVATTSEEPWILVVTMGGYGKRVPVSQFRLQNRAGMGLLATKFRLPK------DQLAALRVVNQGDELMMVTSRGIIIRQIVDAISPQSRMATGVRVQRLDEDDAIAAVALVPISD 445          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKD9_9STRA8.330e-6760.49DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribon... [more]
A0A6H5KKP9_9PHAE1.170e-5851.77DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectoca... [more]
A0A2W1JRP7_9CYAN6.560e-5549.33DNA gyrase subunit A n=1 Tax=Acaryochloris thomasi... [more]
A0A7S2UV19_9STRA1.030e-5451.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XNS8_HETAK1.670e-5450.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3M1KYF0_9CYAN1.300e-5248.20DNA gyrase subunit A n=1 Tax=Cyanobacteria bacteri... [more]
A0A6P0QGR2_9CYAN5.140e-5246.38DNA gyrase subunit A n=2 Tax=unclassified Microcol... [more]
UPI001408D5167.040e-5246.22DNA gyrase subunit A n=1 Tax=Aphanocapsa montana T... [more]
A0A6P0XZA0_9CYAN7.050e-5244.74DNA gyrase subunit A (Fragment) n=1 Tax=Okeania sp... [more]
A0A6P0VLR8_9CYAN8.350e-5246.29DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:514417..518321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score189.1
Seed ortholog evalue2.2e-45
Seed eggNOG ortholog118168.MC7420_5515
Preferred namegyrA
KEGG koko:K02469
EggNOG free text desc.A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
EggNOG OGs1G1RQ@1117,1H8XT@1150,COG0188@1,COG0188@2
EC5.99.1.3
COG Functional cat.L
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDNA gyrase subunit A
Ec32 orthologEc-15_001600.1
Exons4
Model size662
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20078.1prot_S-ischiensis_contig84.20078.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 514417..518321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.5369751-CDS-S-ischiensis_contig84:514416..5145151622817337.5369751-CDS-S-ischiensis_contig84:514416..514515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 514417..514515 -
1695741038.1606724-CDS-S-ischiensis_contig84:514416..5145151695741038.1606724-CDS-S-ischiensis_contig84:514416..514515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 514417..514515 -
1622817337.5521514-CDS-S-ischiensis_contig84:516042..5162261622817337.5521514-CDS-S-ischiensis_contig84:516042..516226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 516043..516226 -
1695741038.1810956-CDS-S-ischiensis_contig84:516042..5162261695741038.1810956-CDS-S-ischiensis_contig84:516042..516226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 516043..516226 -
1622817337.5629044-CDS-S-ischiensis_contig84:517679..5178371622817337.5629044-CDS-S-ischiensis_contig84:517679..517837Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 517680..517837 -
1695741038.1949663-CDS-S-ischiensis_contig84:517679..5178371695741038.1949663-CDS-S-ischiensis_contig84:517679..517837Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 517680..517837 -
1622817337.574243-CDS-S-ischiensis_contig84:518102..5183211622817337.574243-CDS-S-ischiensis_contig84:518102..518321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 518103..518321 -
1695741038.2077904-CDS-S-ischiensis_contig84:518102..5183211695741038.2077904-CDS-S-ischiensis_contig84:518102..518321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 518103..518321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20078.1

>prot_S-ischiensis_contig84.20078.1 ID=prot_S-ischiensis_contig84.20078.1|Name=mRNA_S-ischiensis_contig84.20078.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=220bp
QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQG
YAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGE
GPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLA
CLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIA
NVAVLPPMDDIDTDASTAKA
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mRNA from alignment at S-ischiensis_contig84:514417..518321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20078.1 ID=mRNA_S-ischiensis_contig84.20078.1|Name=mRNA_S-ischiensis_contig84.20078.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3905bp|location=Sequence derived from alignment at S-ischiensis_contig84:514417..518321- (Schizocladia ischiensis KU_0333)
CAAGGGTACATCAAGAAGACCGCGCTGTCCGCGTTCGGGTCGCTCCGCCG CGCGGGCCTGGTGGTTACCACGCTCTCCCCCGGGGACGAGCTCATGTCAG TGAAGAAGTGCCGGGAGGAAGACAATGTTATCATCGGGACGCGGCAGGGC TACGCCGTGCGGTTCGCGGCGGACTCGACGCAGCTCCGGCCCATGGGCAG GGGCGCGCGGGGGGTCAAGGTGGGGTGGGGTGTGCGGTTGGACGAGAGGG AGGGAGGTCTATGGTAGAGATTTTGGAGAGATGGCTGCGCTGAAGGGCTT CGAGGAGTCAATGTCTAGACGTGTTTTAGTATACGGCCTCTTCTTCTTTC CCGCTCGCTTGTTTGGCTTCTCGCAAAAAACACCAACACCAACGCCGACG TCGCCACCGCCACCAACACCCACCGCATCCACACACACATCACGCACACA CACACACACACACACACACACACACACACACCAGGCGATGAAGTATCACA AGGACGACGTCCCAGTGGACATTGACATCCTCCCTGGGGGCCAAGGCAGC GAGGGCGACGGCGAAGGCCCCTCCATGGTGATGGTGACCACGCAGGGCTA CGGCAAACGGGTCAACAGCAAGGAATTCAAGACACAAGCCCGGTGGGTGG GAAGTTAGCACAATGGTTCAAAGAACCCAAGTAGTTGCTTAGAAGGCTAT TCAAGGAGTCAAAACACAGGCCCGGTGCGTGGAAACGTCCAAGTAGTTAG TAGAATGAGTTTCAAAGAACCCAAGTAGTTACTTGCTCGAAGTAGAAGAC TACGCAAGGAGTTCAAAACACAGGCCCGGTGGATGGAAACGTCCAAGTAG TTAGTAGAATGAGTTGCAAAGAACCCAAGTAGTTGCTTAGAAGGCTACTC AAGGAGTTCAAAACACAGGCCCGGTGGGCGGGCGGGTCGGCCTGGTGCTA ACCAGTGATGGAATATCTAAGCAAGTCAACCTATTTATCGACAGCACTGA CATGTACATCTATCGACAGTCGATATTCGATTTTTTGACCCACACTAAAT CCAGGTACTTCAAAGTAGCTACAGTAGTGACGCCACCCACAATATTAGTC TAGCCTGATAACTATCTACTCGTAGAGCTACAGATCGATATTTTATCACT GGTGCTAAGAGTACGCCTACCAGAGTTGCTTTTGGCTCGTGCGCCCTGTC AGCCGCAACTCCTCTACCCTCCACTCCCCAGCTGGCCGTGACTACAGCGA TGCCACGGCCCCCGCCGCCACAAGTGCGCTGCCACCCACTGCTGCCGCTG CCCCTTTCCGCCCCCCCCCGGCGCCGCCACCGATACCGCCACTACCGGCT GCTGCTGCCCGATGCCCACTCCCATTGCCAACTTCCCTGTTGCTATTCAA TGGTCTAGACTGGCGCAAACGCCTGGTCAATGCACTTGACATGACGTGCG CACGTACCCCCTGGGTTGCGTGTCTGGCTGTGTCTCAATGGCTGCCTCTG TTGCACCCCCTCCCCCACGCTGCAATTGTGCATGTCAACCTTTGCCGCCG CCGTCGCTGCCGCTGCCCGCCCCGGCCCTAGCTAAATCTTCAAGGCCTTT CATTTGCACCTACAATATACCGACGCCTTCCAACTCGTTGTAGTTCACAA AGGAAAAAAAGGGGGTTTAGCCCTACCCCTACCCCTAGGTAACCTGTTGG TCTCGGTCGCCGACGGCATTTGTTTGCAAGGGGCGGGAAGGGCGCGATGG CCCTCAAGTTCAAGCAAAGGCGGGCATTCATTGTACCTCGTAGTTCACAA AGGAAAGGGGGTGTAGCCCTAACGCTAGCCCTAGCCCTAACCTGTTGGTC GGTCGCCGGCGACGGCGTTGTTTGCCGGGGCGGGAAGGGCGTGAGTGCCC TCAAGTTCATTTTATGTCTAACTGCCCCCTAAGTACCTCTAATTAAGGTC CTAAAAGGGCGCCACGTGGGGGTTAAGTGCCAACCCTGCCCCCCGCTGCG ATTGTGCATGTTGACCTTTGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCG CCGCCCGCCCCGGCCCTGTTGGTCGCCGGCGGCATTTGCTTGCAGGGGCG GGAAGGGCGTGATCGCCCTCAAGTTCAAGCAGAGCAAGACGGAGGGCGCG GCGGCGGACCGCCTGGCCTGCCTGCGGGTGGTGAACGAGGGGGACGAGAT CATGCTGAGCACTTTGCAGGGCACCATCGTGCGCCAGGCGGCCGGGGACA TTGCAGGCCAGAGCCGCACGGCGACCGGGGTGAGCATTCTTCTCACTATC AAAGTCATGTTGCAGAGGTGCATAGTTACTTCAGATACTTGTTCTCCTAC CTCCTGGAAATCAGTTCCCCCCTCTTGTTGAGCATGGCGAAGGAAGATTT GTCAATGGCATTGGTGGGAGGCAGGTCGGTGTAGGAACCATTGTGCGCCA GGCGGCCAGGGACATTGCGGGCCAGAGCCGCACGGCGACCGGGATGAGCG TGCAGTGCCGTTGAACACAGCGGAAAAGCCATATCAGGAGCACCGATCAT TGAAGGAACAAACCAGTTTCCAAAGCCCCCAATGAAAACAGGCATAGCCA TTACAAGAATCGGAAGGCAAGCATGAGCTGTAATGCCAACATTGTGAAGC TGTCAGCGATTGGGCAACCCCTCCGCCCTGGTTTGCCAGGGGCAGGAGGG ACATTGCCCCGCCCTCGACGGCGCTACTACAGCGGTCAGTGGTCTCTGGA CTACGGCAAGCACAACTACGTGGCTAGACACCCAAAGTTCACGTGTACTT CCAAGTACAGTACATGTTTTGCTCGTATGTAGAAGTACCCTGGTATATAT GTAAGAATCGAGTATCTGAGGGTCGAGCCGATTCATGCGAGGGTGGGGGG GTGAAAGTTACAGGGGGTCGCAACCCGCTTTCCACCGGAGAACTAGCTTG AGACCAGCTTCTACAGCGCACTGTTTGTTATGCTCGACATGGTGGGATAC AGATCTTGCGATCAGGAACAAGGTCACTTTGGTTCGGGTGAGTTCTCAAT GTAGAGCTTTGGCGAGCTCGCTGAAGAGTGGGTCGTGGCCCCACCTTGCA TCACGAAATCGCAAGTTTGCCCCCCCTCCTCTCTCGCATGAACGACACTA CTGTACTGCAGATACCTCCTGATGTACTTCGAAGTATATGCACATCTCAT AGGCTTGCCCAGTTGTCTTGCGACAAAACCGTGCGTGCTTAAATAGCTGA CAACCCTGAACCGAATCTGCGGATTTGACTTCGGACAGGCGAGATATTTC GCCTTGTACGAGCGGAGTAGCTACACAACAGGGCGACTGACCGTTGACTG CACTATGAACCATGGCTAGAGGAAGTGCCCACCTGGGACGCACAAGGCGT GAATGATGACCGAACCATGGCGCTTTTCGGCCCGCCCGCCCGCCCGACTG CGGCGGCAGCCCGTCCTCTCCGCGATCGCCCTCGGGCGCTTGGAATCAGT GATGGAATATCCAAGCAAATCAACCTACTTGTCGACAGTACTGATCTACT TTACATGTCTATTGATAGTCGATATTCGATAGTTTGACCCACGCTAAATC CAAGTAGTTTTTGGCATGAAGATAAAAAGCGAGTGGGAAAGGAGAGGTGT TCCTACATACGCGAGTTCAGGGCCCCCCATCCCCGGAAGCCCGTCTTTTA CTCGCATTCACTCGCAGGCCAAGCAGTTAGGAAGGCCACCCACAAAATCA GCCGAGCCCGATAGCTATCTACTGATCGAGATTCCATCGCTGCTTGGAAT GAAAAGGTGCTGGTGCAGAAGATTGACGAGGGCGACGAGATCGCCAACGT GGCTGTGCTACCCCCCATGGACGACATCGACACAGACGCCTCCACAGCAA AGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:514417..518321-

>mRNA_S-ischiensis_contig84.20078.1 ID=mRNA_S-ischiensis_contig84.20078.1|Name=mRNA_S-ischiensis_contig84.20078.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1320bp|location=Sequence derived from alignment at S-ischiensis_contig84:514417..518321- (Schizocladia ischiensis KU_0333)
CAAGGGTACATCAAGAAGACCGCGCTGTCCGCGTTCGGGTCGCTCCGCCG
CGCGGGCCTGGTGGTTACCACGCTCTCCCCCGGGGACGAGCTCATGTCAG
TGAAGAAGTGCCGGGAGGAAGACAATGTTATCATCGGGACGCGGCAGGGC
TACGCCGTGCGGTTCGCGGCGGACTCGACGCAGCTCCGGCCCATGGGCAG
GGGCGCGCGGGGGGTCAAGCAAGGGTACATCAAGAAGACCGCGCTGTCCG
CGTTCGGGTCGCTCCGCCGCGCGGGCCTGGTGGTTACCACGCTCTCCCCC
GGGGACGAGCTCATGTCAGTGAAGAAGTGCCGGGAGGAAGACAATGTTAT
CATCGGGACGCGGCAGGGCTACGCCGTGCGGTTCGCGGCGGACTCGACGC
AGCTCCGGCCCATGGGCAGGGGCGCGCGGGGGGTCAAGGCGATGAAGTAT
CACAAGGACGACGTCCCAGTGGACATTGACATCCTCCCTGGGGGCCAAGG
CAGCGAGGGCGACGGCGAAGGCCCCTCCATGGTGATGGTGACCACGCAGG
GCTACGGCAAACGGGTCAACAGCAAGGAATTCAAGACACAAGCCCGGCGA
TGAAGTATCACAAGGACGACGTCCCAGTGGACATTGACATCCTCCCTGGG
GGCCAAGGCAGCGAGGGCGACGGCGAAGGCCCCTCCATGGTGATGGTGAC
CACGCAGGGCTACGGCAAACGGGTCAACAGCAAGGAATTCAAGACACAAG
CCCGGGGCGGGAAGGGCGTGATCGCCCTCAAGTTCAAGCAGAGCAAGACG
GAGGGCGCGGCGGCGGACCGCCTGGCCTGCCTGCGGGTGGTGAACGAGGG
GGACGAGATCATGCTGAGCACTTTGCAGGGCACCATCGTGCGCCAGGCGG
CCGGGGACATTGCAGGCCAGAGCCGCACGGCGACCGGGGGGCGGGAAGGG
CGTGATCGCCCTCAAGTTCAAGCAGAGCAAGACGGAGGGCGCGGCGGCGG
ACCGCCTGGCCTGCCTGCGGGTGGTGAACGAGGGGGACGAGATCATGCTG
AGCACTTTGCAGGGCACCATCGTGCGCCAGGCGGCCGGGGACATTGCAGG
CCAGAGCCGCACGGCGACCGGGGTGCTGGTGCAGAAGATTGACGAGGGCG
ACGAGATCGCCAACGTGGCTGTGCTACCCCCCATGGACGACATCGACACA
GACGCCTCCACAGCAAAGGCTGTGCTGGTGCAGAAGATTGACGAGGGCGA
CGAGATCGCCAACGTGGCTGTGCTACCCCCCATGGACGACATCGACACAG
ACGCCTCCACAGCAAAGGCT
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