mRNA_S-ischiensis_contig84.20078.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA) HSP 1 Score: 229 bits (584), Expect = 8.330e-67 Identity = 124/205 (60.49%), Postives = 151/205 (73.66%), Query Frame = 1
Query: 1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVL 615
+G+IKKT+L+AF SL GL + +L GDEL+ VK C E D++IIGT+QG AVRFAA + QLRP GR +RGVKAMK+ D PVDIDILPG E +G S+V VT QGYGKRV + EFK Q RGG GVIA KFK + GAA D L LRV+ GD+++LST QGTIVRQ A ++ Q RTATGV VQK+DEGDEIA++AV+
Sbjct: 605 RGWIKKTSLAAFQSLTARGLTIISLEDGDELLWVKTCTEADSIIIGTQQGMAVRFAASADQLRPSGRTSRGVKAMKFKPGDYPVDIDILPGADDQELP-DGKSLVAVTVQGYGKRVGADEFKIQRRGGMGVIATKFKTKR--GAAQDALCALRVIANGDQLLLSTAQGTIVRQPAATVSEQGRTATGVRVQKLDEGDEIASIAVV 806
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.170e-58 Identity = 117/226 (51.77%), Postives = 153/226 (67.70%), Query Frame = 1
Query: 1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILP--GGQGSEGDG-----EGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPPMDDIDTDASTAK 657
+GYIK+T L+AF S GL++ +L D L VK+C ++D ++IG++QGYA RF A+ LRP GR +RGVKAM + +DVPVDI ++P + GD EG S++++TT+GYGKRV EFKT RGGKGVIALK +Q D LAC R+V DEIMLST QGTIVRQ AG IA QSRTATGV+VQK+D D I +VA++P + + D A+T +
Sbjct: 783 KGYIKRTPLAAFRSTSSRGLIIISLGEDDTLRWVKRCCDDDGIVIGSKQGYATRFLANKKDLRPSGRTSRGVKAMNFRDEDVPVDIGVVPREAAAATAGDDAGVKEEGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQK-----LEDTLACFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVALVPEISE-DAAATTGR 1002
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A2W1JRP7_9CYAN (DNA gyrase subunit A n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JRP7_9CYAN) HSP 1 Score: 197 bits (501), Expect = 6.560e-55 Identity = 111/225 (49.33%), Postives = 145/225 (64.44%), Query Frame = 1
Query: 4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPG----GQGSEGDGE---------------GPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
GYIKKTALSAFG++R GL+ +L GD+L V++ R ED+++IG+R G A+ F AD QLRP+GR RGV++M D + IDILP G GD GP ++++TT GYGKRV +F+ Q R GKG+IA KFK KT+ A D+LA LRVVN DE+ML T +G I+RQA DI+ QSR+ATGV VQ++D D IA VA++PP
Sbjct: 626 GYIKKTALSAFGNIRSNGLIAISLEDGDQLRWVRRARVEDSIVIGSRLGMAIHFRADHQQLRPLGRATRGVRSMNLRDGDELIGIDILPSAVIAGLAEAGDDADVDDAVAEDLPDDIPGPWILVITTNGYGKRVPVDQFRLQNRAGKGLIATKFKAKKTKKQADDQLATLRVVNAEDELMLVTSRGVIIRQAVIDISSQSRSATGVRVQRLDADDFIAAVALVPP 850
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A7S2UV19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV19_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.030e-54 Identity = 92/177 (51.98%), Postives = 127/177 (71.75%), Query Frame = 1
Query: 82 GDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAV 612
GD + V++C +D+V+IGT+ GYA RF A+ QLR GR ++GV+++ K DVPVD+DI+P ++ + EG ++ VT+ GYGKRV EF Q RGGKGVIA+KF+ + EGA ++L CLRVV E DE++LST G IVRQ A I+ QSR+ATGV++QK+D+ DEI N+AV
Sbjct: 2 GDRVQWVRQCTAQDDVVIGTKNGYATRFKANDEQLRTTGRTSQGVRSINLRKGDVPVDMDIIP----NQEEEEGQMLLAVTSGGYGKRVAVGEFHAQNRGGKGVIAIKFRDGRNEGAHVEKLCCLRVVKEADEVVLSTRSGNIVRQRADQISLQSRSATGVIIQKLDQKDEIINIAV 174
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A7S3XNS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNS8_HETAK) HSP 1 Score: 185 bits (469), Expect = 1.670e-54 Identity = 104/205 (50.73%), Postives = 137/205 (66.83%), Query Frame = 1
Query: 4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLP 618
G+IK+TALSAF + GL +L GD L V +CR+ VIIGT+ G+A RF ++LR GR +RGVK+M D PVD+DILP + + + ++++T G GKRV + EF+ Q RGG GVIA KFK +T+ D+LACLRVV++ DEI+LST G IVRQ A DI+ Q R ATGV+VQK+ +GDEI NVAV+P
Sbjct: 84 GWIKRTALSAFQKVTARGLTCISLGDGDRLRHVGRCRDSQTVIIGTQNGFATRF--HMSKLRASGRSSRGVKSMNLRDGDRPVDMDILPD---PDTEADDQQLLLLTRSGLGKRVAATEFRIQGRGGMGVIATKFKARQTD----DKLACLRVVSDNDEIVLSTKGGNIVRQRAADISIQGRAATGVVVQKLVKGDEIVNVAVVP 279
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A3M1KYF0_9CYAN (DNA gyrase subunit A n=1 Tax=Cyanobacteria bacterium J083 TaxID=2420336 RepID=A0A3M1KYF0_9CYAN) HSP 1 Score: 191 bits (484), Expect = 1.300e-52 Identity = 107/222 (48.20%), Postives = 143/222 (64.41%), Query Frame = 1
Query: 1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPG---------------GQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
+GYIKKTALSAF ++R GL+ +LS D+L V+ + ED++I+GTRQG A+RF AD+ QLRP+GR RGV+AMK +D + +D+LP G+E GP ++ +TT+GYGKRV F+ Q R G GV A+KFK + DRLA + VV E DE M+ T +G I+RQAA I+ QSR+ATGV VQK+DE D IA VA++PP
Sbjct: 622 KGYIKKTALSAFHNIRSNGLIAISLSEDDQLRWVRLVKPEDSIIVGTRQGMAIRFLADNQQLRPLGRATRGVRAMKLRGNDEIISMDVLPSQVPATLSEEEEDENEDLGTEVANSGPWLLTITTEGYGKRVPVSRFRLQNRAGMGVRAIKFKNKQ------DRLAAIHVVQEDDEFMIVTNRGIIIRQAANAISPQSRSATGVRVQKLDEDDAIAAVALVPP 837
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6P0QGR2_9CYAN (DNA gyrase subunit A n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QGR2_9CYAN) HSP 1 Score: 189 bits (480), Expect = 5.140e-52 Identity = 109/235 (46.38%), Postives = 145/235 (61.70%), Query Frame = 1
Query: 1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGG----------QGSEGD------------------GEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
+GYIKKTAL AFG++R GL+ +L GD+L V++ E D++IIG+R G A+ F D QLRP+GR RGVKAMK +DD + +DILPG SE D G+GP +++VT GYGKRV K+F+ Q R G G++A KF+ K D+L+ L VVNEGDE+M+ T +G I+RQ G I+ QSR ATGV VQ++DE D IA VA++PP
Sbjct: 622 KGYIKKTALDAFGNIRANGLIAISLEEGDQLRWVRRATEADSIIIGSRMGMAIHFKTDHDQLRPLGRATRGVKAMKLKRDDELISMDILPGQVVASLAPVNETESEEDIEELNGAELNGAELVETAGQGPWVLVVTMGGYGKRVPVKQFRLQNRAGMGILATKFRLPK------DKLSSLMVVNEGDELMMVTSRGIIIRQVIGAISPQSRMATGVRVQRLDEDDAIAAVALVPP 850
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: UPI001408D516 (DNA gyrase subunit A n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI001408D516) HSP 1 Score: 189 bits (479), Expect = 7.040e-52 Identity = 110/238 (46.22%), Postives = 149/238 (62.61%), Query Frame = 1
Query: 4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPGG------QGSEGDGE-------------GPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPPMDDIDTDASTAKA 660
GYIKKTALSAF ++R GL+ L D+L V++ REED +IIGT QG A+ F AD QLRP+GR RGVKAMK D+ + +D++ G + E D GP ++++TTQGYGKRV +F+ Q R GKGV + KFK+ K + D +A LR+V+ GDE+ML T +G ++RQA I+ QSR+ATGV VQ++D D IA V ++PP +D D DA A+A
Sbjct: 627 GYIKKTALSAFSNIRTNGLIAIALEEDDQLRWVRRAREEDTIIIGTHQGMAIHFRADHEQLRPLGRATRGVKAMKLKTGDLLIGMDVIAGAVTAGLDETLEEDAPDLEVEEEIIEETAGPWVLVITTQGYGKRVPVSQFRLQRRAGKGVTSTKFKKLKQK----DYVASLRIVHPGDELMLITSRGVVIRQAVDAISSQSRSATGVRVQRLDTEDSIAAVTLVPPSED-DGDAEFAEA 859
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6P0XZA0_9CYAN (DNA gyrase subunit A (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XZA0_9CYAN) HSP 1 Score: 177 bits (450), Expect = 7.050e-52 Identity = 102/228 (44.74%), Postives = 137/228 (60.09%), Query Frame = 1
Query: 4 GYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDILPG-------GQGSEGD---------------GEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPP 621
GYIKKTAL+AF +R GL+ +L GD+L V+ REED++IIG+RQG A+ F AD QLRP+GR RGVK+MK D + +D+LP E D G+GP ++ +T GYGKRV+ K+F+ Q R G G+ +KF+ + D L L VVN+ DE+ML T +G I+RQA I+ QSR ATGV VQK+D+ D I VA++PP
Sbjct: 30 GYIKKTALAAFSRIRANGLIAISLEEGDQLRWVRLAREEDSIIIGSRQGMAIHFKADRQQLRPLGRSTRGVKSMKLRSGDEIISMDVLPSQVTAEVASAAEEEDEHLEETNEETTVTEPGQGPWVLAITRGGYGKRVSVKKFRLQNRAGMGLRGMKFRIDR------DELIALHVVNQDDELMLVTNRGIIIRQAVESISSQSRMATGVRVQKLDKDDAIVAVALVPP 251
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Match: A0A6P0VLR8_9CYAN (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=2 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0VLR8_9CYAN) HSP 1 Score: 182 bits (463), Expect = 8.350e-52 Identity = 106/229 (46.29%), Postives = 142/229 (62.01%), Query Frame = 1
Query: 1 QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGYAVRFAADSTQLRPMGRGARGVKAMKYHKDDVPVDIDIL--------------------PGGQGSEGDGEGPSMVMVTTQGYGKRVNSKEFKTQARGGKGVIALKFKQSKTEGAAADRLACLRVVNEGDEIMLSTLQGTIVRQAAGDIAGQSRTATGVLVQKIDEGDEIANVAVLPPMD 627
QGYIKKTAL AF ++R GL+ +L+ GD+L V++ + ED+VIIG+RQG A+ F AD QLRP+GR RGVKAMK + D + +DIL PG + E P +++VT GYGKRV +F+ Q R G G++A KF+ K D+LA LRVVN+GDE+M+ T +G I+RQ I+ QSR ATGV VQ++DE D IA VA++P D
Sbjct: 223 QGYIKKTALDAFSNIRTNGLIAISLAEGDQLRWVRRAKAEDSVIIGSRQGMAIHFKADQEQLRPLGRATRGVKAMKLREHDELISMDILSSQVVANLAAASAEDDSQELPGEEVVATTSEEPWILVVTMGGYGKRVPVSQFRLQNRAGMGLLATKFRLPK------DQLAALRVVNQGDELMMVTSRGIIIRQIVDAISPQSRMATGVRVQRLDEDDAIAAVALVPISD 445 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig84.20078.1 >prot_S-ischiensis_contig84.20078.1 ID=prot_S-ischiensis_contig84.20078.1|Name=mRNA_S-ischiensis_contig84.20078.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=220bp QGYIKKTALSAFGSLRRAGLVVTTLSPGDELMSVKKCREEDNVIIGTRQGback to top mRNA from alignment at S-ischiensis_contig84:514417..518321- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig84.20078.1 ID=mRNA_S-ischiensis_contig84.20078.1|Name=mRNA_S-ischiensis_contig84.20078.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3905bp|location=Sequence derived from alignment at S-ischiensis_contig84:514417..518321- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig84:514417..518321- >mRNA_S-ischiensis_contig84.20078.1 ID=mRNA_S-ischiensis_contig84.20078.1|Name=mRNA_S-ischiensis_contig84.20078.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1320bp|location=Sequence derived from alignment at S-ischiensis_contig84:514417..518321- (Schizocladia ischiensis KU_0333)back to top |