mRNA_S-ischiensis_contig84.20076.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20076.1
Unique NamemRNA_S-ischiensis_contig84.20076.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20076.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.160e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:   38 LLHYTRQIGYMSELEEARLPHRLPHVLHSSKEELVRALWRDHRDERGLLPLLAD 199
            L  + R +GYMSELEEARLPH+L  V     E++VRAL RDHR ER L+PL+ D
Sbjct: 2619 LSDFRRNVGYMSELEEARLPHKLEEVASCPAEDIVRALRRDHRGERSLIPLMCD 2672
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSU3_ECTSI1.160e-1159.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:451493..453080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size202
Cds size201
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20076.1prot_S-ischiensis_contig84.20076.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 451493..453080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.3847954-CDS-S-ischiensis_contig84:451492..4515281622817333.3847954-CDS-S-ischiensis_contig84:451492..451528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 451493..451528 -
1695741034.7943525-CDS-S-ischiensis_contig84:451492..4515281695741034.7943525-CDS-S-ischiensis_contig84:451492..451528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 451493..451528 -
1622817333.3957236-CDS-S-ischiensis_contig84:452545..4526561622817333.3957236-CDS-S-ischiensis_contig84:452545..452656Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 452546..452656 -
1695741034.8089411-CDS-S-ischiensis_contig84:452545..4526561695741034.8089411-CDS-S-ischiensis_contig84:452545..452656Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 452546..452656 -
1622817333.406574-CDS-S-ischiensis_contig84:453026..4530801622817333.406574-CDS-S-ischiensis_contig84:453026..453080Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 453027..453080 -
1695741034.820615-CDS-S-ischiensis_contig84:453026..4530801695741034.820615-CDS-S-ischiensis_contig84:453026..453080Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 453027..453080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20076.1

>prot_S-ischiensis_contig84.20076.1 ID=prot_S-ischiensis_contig84.20076.1|Name=mRNA_S-ischiensis_contig84.20076.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
RYYHSHSIIGGGAASLHPANRLHVGAGRGTSAASPAPRPAQQQGGARKGA
VEGPQGRAGPPPPPGRH
back to top

mRNA from alignment at S-ischiensis_contig84:451493..453080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20076.1 ID=mRNA_S-ischiensis_contig84.20076.1|Name=mRNA_S-ischiensis_contig84.20076.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1588bp|location=Sequence derived from alignment at S-ischiensis_contig84:451493..453080- (Schizocladia ischiensis KU_0333)
CGCTACTATCACTCACACTCAATCATTGGCGGGGGGGCTGCTTCACTACA
CCCGGTGAGTGGAAATTTTTACCGTGGGCAGGTGTACAAGTACCCCGCGG
CTGTGAGCGTACAGTACAGTGCAGTGCTCTTGCTGCTGCTTCGAAGTGCA
AGTGCTGATGAACTACAGTAGAGTACTTAAATACGCGCGTAAGACACTGC
AGGAGTGGGGTTAGTACCCACGCTGGGTGTACCTTGTTGCACCAATTCAG
ATGATTTGAATGGGCGGCTCTAGAAACTTGTACATTCTCGCCTGTGTGAA
CTAGTTCAGTGGGTAGAACAGTACTAGCAGCAGTTGATGTTACAATGTGC
ATCATTGAGTACTCGTACTTGGTATAGCTCTAGAGGCCTCATTAGTTAAT
CGGGTGCCCCCTGTCCCCTCCCAGGCAAATCGGTTACATGTCGGAGCTGG
AAGAGGCACGTCTGCCGCATCGCCTGCCCCACGTCCTGCACAGCAGCAAG
GAGGAGCTCGTAAGGGCGCTGTGGAGGGACCACAGGTACTTCGAAGTACT
TGTTCTTGCTGTGCACATGCTGCTGCTGTGCCGCGCAAGACTTTCCTAGT
GATTCATATAAATTGTAACGAGGTACAATCGCACATCTGTGCGATTGACT
GTTCTCATAGTTTCTAGTGTTGTAAGAGTAGTGTTGGGACAGCGCAAGGC
AAGCGTGGTAAGAAGGTACGAGTACTCACACCGGGAAGCAAGTGTTTATA
GGGTAGCCTGCCCCACATCCTGCACAGCAGCAAGGAGGAGCTCGCAAGGG
CGCTGAGGAGGGACCACAGGCACTAAGCACTTCCCCTCTCGCCGAATCTT
TCATTTCCTTGCCTTTCCCCCGCATCGTTCCACTGTCCCTCGGTTTTTGA
ATTATTTCGACGGCACGCGAGTTCCGGGCCCCGTCCCCAAAACCCAAGGT
GGGGCCCTCACCAGAAGCCCTTCCTACTGTACGGGCAGTGTCCCTCGGTT
TCTTTCGCTTTAGGGACAAGCGCCCCCCCTGGCAGACATGCTCCTGGACT
GCGAATCTTCGCCTGCACTTGTTTCCCCATTTTGTTTTCCCTCTTCTTCC
TTTCAGCTCAGGCTTCCCCCGCTCTCCTCTCGCCGCATCGTTCGTTTCCT
TTCCTTTCCTTTCCCGCTCGTCGTTTGACTGTCCCTCCGTTTCTCTCTCC
TTAGGGACGAGCGGGGCCTCCTCCCCCTCCTGGCGGACATGCTCCTGGAC
CTTAAATCTTCCGAATCTTCTGGTTTCCCTCTTTTTCCGTCAACCTTCTT
TCGTTCGGCCCAGGCTTTCCCCGTCCCCCTCTCGCCGAATCTTTTGTTTC
CTCTCTGTTCCCACGCGTCGTTTCACTGTGCCTCGTTTCTTAATTGTTTG
ATGGCAGGCGAGTCTACCGCGCGCCGACCGGATCATGTTCGCGTGCTCAC
TGTGCACGGTCCGGGCCCCGTCCCAAAAAACGAAGGTGGGGACCTCACCA
GAAGTCGTTCATACTGTTGAGCTCTACTGTCCCTCGGTTTCTTTCGCTTT
AGGGACGAGCGGGGCCTCCTCCCCCTCCTGGCAGACAT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig84:451493..453080-

>mRNA_S-ischiensis_contig84.20076.1 ID=mRNA_S-ischiensis_contig84.20076.1|Name=mRNA_S-ischiensis_contig84.20076.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig84:451493..453080- (Schizocladia ischiensis KU_0333)
CGCTACTATCACTCACACTCAATCATTGGCGGGGGGGCTGCTTCACTACA
CCCGCGCTACTATCACTCACACTCAATCATTGGCGGGGGGGCTGCTTCAC
TACACCCGGCAAATCGGTTACATGTCGGAGCTGGAAGAGGCACGTCTGCC
GCATCGCCTGCCCCACGTCCTGCACAGCAGCAAGGAGGAGCTCGTAAGGG
CGCTGTGGAGGGACCACAGGCAAATCGGTTACATGTCGGAGCTGGAAGAG
GCACGTCTGCCGCATCGCCTGCCCCACGTCCTGCACAGCAGCAAGGAGGA
GCTCGTAAGGGCGCTGTGGAGGGACCACAGGGACGAGCGGGGCCTCCTCC
CCCTCCTGGCAGACATGGACGAGCGGGGCCTCCTCCCCCTCCTGGCAGAC
AT
back to top