mRNA_S-ischiensis_contig84.20075.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20075.1
Unique NamemRNA_S-ischiensis_contig84.20075.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20075.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 7.450e-9
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:   35 EVLQVLGKVLQLLRWCPFPERMDIAWFASSFAALGPRWHAHALRAALCIPDAVARTTTTL 214
            +V  V+ +V+ LL  CPFPERM++ WF S+ A LGPR+HA A++ AL +P  V RT   L
Sbjct: 2832 DVNAVVEQVVLLLGACPFPERMNLKWFYSTLADLGPRFHAQAVQIALGVPGPVPRTAAVL 2891
[Close]
BLAST of mRNA_S-ischiensis_contig84.20075.1 vs. uniprot
Match: A0A6H5L563_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L563_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.440e-8
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:   35 EVLQVLGKVLQLLRWCPFPERMDIAWFASSFAALGPRWHAHALRAALCIPDAVARTTTTL 214
            +V  V+ +V+ LL  CPFPERM++ WF S+ A LGPR+HA A++ AL +    ART   L
Sbjct:  162 DVNAVVEQVVMLLGACPFPERMNLKWFYSTLADLGPRFHAQAVQVALGVSGPAARTAAVL 221
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU3_ECTSI7.450e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L563_9PHAE2.440e-848.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:448561..449476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.3432438-CDS-S-ischiensis_contig84:448561..4487191622817333.3432438-CDS-S-ischiensis_contig84:448561..448719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 448562..448719 -
1695741034.7690444-CDS-S-ischiensis_contig84:448561..4487191695741034.7690444-CDS-S-ischiensis_contig84:448561..448719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 448562..448719 -
1622817333.354708-CDS-S-ischiensis_contig84:449418..4494761622817333.354708-CDS-S-ischiensis_contig84:449418..449476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 449419..449476 -
1695741034.7805169-CDS-S-ischiensis_contig84:449418..4494761695741034.7805169-CDS-S-ischiensis_contig84:449418..449476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 449419..449476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20075.1prot_S-ischiensis_contig84.20075.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 448562..449476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20075.1

>prot_S-ischiensis_contig84.20075.1 ID=prot_S-ischiensis_contig84.20075.1|Name=mRNA_S-ischiensis_contig84.20075.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
GGGVGGGRGRPGGAPGAGEGPPAPAVVPLPRTHGHRLVRLLLCCPGPPLA
RPRPPRSPMHSRCGSQNHHYPA
back to top

mRNA from alignment at S-ischiensis_contig84:448561..449476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20075.1 ID=mRNA_S-ischiensis_contig84.20075.1|Name=mRNA_S-ischiensis_contig84.20075.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=916bp|location=Sequence derived from alignment at S-ischiensis_contig84:448561..449476- (Schizocladia ischiensis KU_0333)
GGTGGAGGAGTGGGAGGCGGACGTGGCCGACCGGGAGGTGCTCCAGGTGC
TGGGGAAGGTGAGGTTTGTAGAGTTGTGAACTGGTGCCGCTTTTTACCGG
TCGGTACCAGTTAGCTGGTTGAACCGGTTGACCGACCGGTGGCCAATCGT
GTGGCCGGAGCGGGTGACATGACCGCTCTTTGTTGATTTTGGCAATATTC
TAGCCGTCACCGGCAACCGGTCAAAACTGACCAGTCACAAGACCGGTTAA
CAGTTCAACTGTAGGCCTTGCCACTTCACAAACCTACAGTAGTCATTGAG
TCTTGCCTGGTTCCCCCCCTCTTTGGTGTCACGCGGAGCGTACCTGTCAA
CAAGACAACCGCTGGGCTCTCTGTCCAAAACACACACACACACACACACA
CACCTGGAAAGTATTCCATTTCCAACAAAACTGCACCGGCCTCAGTCCTG
CTATATATACGGGTATTGTAGTGCTCACGCGTACTTCGACGTAGGTGGTG
ACACCGACATCTGGCGCCTCTCTCTCGAAACAGAAACAACTTACGCTAGC
TAGCCGCCCCTTTCCGAACAACACCGCACTGATATGGGAACACTCAATTC
TTACATGGGACAACCACTACTGTAGTACGGGAACACTCCGTCTCACACAC
GTGTGATTGTACCTCGTTACAATTTTTTTATTTATTGTTTGACATGCGAG
TTCCGGGCCCCATCAAATTATATATAATCACTGCACAATTCTGTTTGTTG
TTCCCAGGTCCTCCAGCTCCTGCGGTGGTGCCCCTTCCCCGAACGCATGG
ACATCGCTTGGTTCGCCTCCTCCTTTGCTGCCCTGGGCCCCCGCTGGCAC
GCCCACGCCCTCCGCGCAGCCCTATGCATTCCCGATGCGGTAGCCAGAAC
CACCACTACCCTGCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig84:448561..449476-

>mRNA_S-ischiensis_contig84.20075.1 ID=mRNA_S-ischiensis_contig84.20075.1|Name=mRNA_S-ischiensis_contig84.20075.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig84:448561..449476- (Schizocladia ischiensis KU_0333)
GGTGGAGGAGTGGGAGGCGGACGTGGCCGACCGGGAGGTGCTCCAGGTGC
TGGGGAAGGGTGGAGGAGTGGGAGGCGGACGTGGCCGACCGGGAGGTGCT
CCAGGTGCTGGGGAAGGTCCTCCAGCTCCTGCGGTGGTGCCCCTTCCCCG
AACGCATGGACATCGCTTGGTTCGCCTCCTCCTTTGCTGCCCTGGGCCCC
CGCTGGCACGCCCACGCCCTCCGCGCAGCCCTATGCATTCCCGATGCGGT
AGCCAGAACCACCACTACCCTGCGGTCCTCCAGCTCCTGCGGTGGTGCCC
CTTCCCCGAACGCATGGACATCGCTTGGTTCGCCTCCTCCTTTGCTGCCC
TGGGCCCCCGCTGGCACGCCCACGCCCTCCGCGCAGCCCTATGCATTCCC
GATGCGGTAGCCAGAACCACCACTACCCTGCG
back to top