mRNA_S-ischiensis_contig84.20068.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20068.1
Unique NamemRNA_S-ischiensis_contig84.20068.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:386636..386951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.7664022-CDS-S-ischiensis_contig84:386635..3869501622817333.7664022-CDS-S-ischiensis_contig84:386635..386950Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 386636..386950 +
1695741035.0187402-CDS-S-ischiensis_contig84:386635..3869501695741035.0187402-CDS-S-ischiensis_contig84:386635..386950Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 386636..386950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20068.1prot_S-ischiensis_contig84.20068.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 386636..386950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20068.1

>prot_S-ischiensis_contig84.20068.1 ID=prot_S-ischiensis_contig84.20068.1|Name=mRNA_S-ischiensis_contig84.20068.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
VHATAALSVPHASTDELRGQLGRTGWGGGTSMPGVCAPMACKMPGCRFST
SMATSMMMILPGLRSGGHRMPVGASAAREPTNAPPLGLEKHHTERPRPRV
GPVTR
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mRNA from alignment at S-ischiensis_contig84:386636..386951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20068.1 ID=mRNA_S-ischiensis_contig84.20068.1|Name=mRNA_S-ischiensis_contig84.20068.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=316bp|location=Sequence derived from alignment at S-ischiensis_contig84:386636..386951+ (Schizocladia ischiensis KU_0333)
GTGCATGCAACCGCCGCCCTCAGTGTCCCTCACGCGTCCACCGATGAACT
GAGGGGCCAGCTGGGGCGGACCGGGTGGGGGGGCGGTACAAGCATGCCAG
GGGTGTGCGCGCCGATGGCCTGCAAGATGCCTGGCTGCCGTTTCTCAACT
TCCATGGCTACTTCCATGATGATGATCCTGCCAGGCCTGCGCTCTGGGGG
GCACCGGATGCCAGTCGGAGCTTCCGCCGCAAGAGAGCCCACGAACGCGC
CGCCGCTCGGGCTGGAGAAGCACCATACGGAGCGCCCACGGCCACGGGTG
GGTCCGGTGACGAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:386636..386951+

>mRNA_S-ischiensis_contig84.20068.1 ID=mRNA_S-ischiensis_contig84.20068.1|Name=mRNA_S-ischiensis_contig84.20068.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig84:386636..386951+ (Schizocladia ischiensis KU_0333)
GTGCATGCAACCGCCGCCCTCAGTGTCCCTCACGCGTCCACCGATGAACT
GAGGGGCCAGCTGGGGCGGACCGGGTGGGGGGGCGGTACAAGCATGCCAG
GGGTGTGCGCGCCGATGGCCTGCAAGATGCCTGGCTGCCGTTTCTCAACT
TCCATGGCTACTTCCATGATGATGATCCTGCCAGGCCTGCGCTCTGGGGG
GCACCGGATGCCAGTCGGAGCTTCCGCCGCAAGAGAGCCCACGAACGCGC
CGCCGCTCGGGCTGGAGAAGCACCATACGGAGCGCCCACGGCCACGGGTG
GGTCCGGTGACGAGGGTGCATGCAACCGCCGCCCTCAGTGTCCCTCACGC
GTCCACCGATGAACTGAGGGGCCAGCTGGGGCGGACCGGGTGGGGGGGCG
GTACAAGCATGCCAGGGGTGTGCGCGCCGATGGCCTGCAAGATGCCTGGC
TGCCGTTTCTCAACTTCCATGGCTACTTCCATGATGATGATCCTGCCAGG
CCTGCGCTCTGGGGGGCACCGGATGCCAGTCGGAGCTTCCGCCGCAAGAG
AGCCCACGAACGCGCCGCCGCTCGGGCTGGAGAAGCACCATACGGAGCGC
CCACGGCCACGGGTGGGTCCGGTGACGAGG
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