mRNA_S-ischiensis_contig84.20062.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20062.1
Unique NamemRNA_S-ischiensis_contig84.20062.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: D8LRY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY6_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.380e-27
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 2 
Query:   95 MGEETAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVTFYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQWVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQADTFKQVRAPS 481
            +G ETA ELRQD++LG+ F LLA  +L R+  S G  G+E VI TFY LI  T++VR+ WFL+P       YAP    AF+G W+G ++SE +   GSL L SIF+L   +WAD+LK    FK+   PS
Sbjct:    2 VGSETARELRQDVILGLGFLLLAAASLKRLLTSAGQRGSEAVITTFYSLILFTSVVRATWFLIPTEVLQPTYAPSTEYAFKGDWLGTYVSEVMLFVGSLSLFSIFILMAIFWADLLK--GIFKESGRPS 128
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A835ZB76_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB76_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.260e-24
Identity = 53/116 (45.69%), Postives = 79/116 (68.10%), Query Frame = 2 
Query:  104 ETAAELRQDIVLGVIFGLLALVALFRVKD-SWGATGTENVIVTFYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQWVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            E+A +  QD+ LG+ F  L L +  R++  S    G+ENVI T Y LI  TA+VR+VW L+P+   ++ YAP D+ AF G+W+GAF+SE + T GS+ L SIF+LF  YW++++K+
Sbjct:    3 ESARQFWQDVSLGIAFVPLVLASARRIQSQSSSGAGSENVITTLYCLILFTAVVRAVWLLIPSDVLNSSYAPRDVYAFHGEWLGAFISEVLLTAGSISLFSIFILFAIYWSNLVKK 118
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A1E7FE52_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE52_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.810e-22
Identity = 66/163 (40.49%), Postives = 88/163 (53.99%), Query Frame = 2 
Query:  107 TAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQ---WVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ----ADTFKQVRAPSAGLPQGRIPQHVGHERSTGRMLMIQAAGQV 571
            T  E   D+V GV F + A+ A  R+  +    G E  +VT FY LI VT++ R++WFL+PA+ W   Y P  I A++     W+GAFLSEFV T GSL L SIF+L + YWADILK+    A           GL  G I Q V  +    R++ I   G +
Sbjct:    4 TTFERGLDLVFGVAFLITAIFAAKRMSWTHQQVGAETTVVTAFYALILVTSVFRAIWFLIPATVWTPQYTPVAILAWDKDHPAWLGAFLSEFVLTAGSLALFSIFILILVYWADILKKYFHPASRRSIPMVTFLGLTLGAINQ-VSTDSQVKRIVWITVTGNL 165
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A448Z6T5_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.460e-20
Identity = 56/118 (47.46%), Postives = 73/118 (61.86%), Query Frame = 2 
Query:  107 TAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQ---WVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            T  E   D+  G+ F + A+ A  R+  +    G E  +VT FY LI VT++ RS WFL+PA+ W   Y P  I A++ +   WVGAFLSEFV T GSL L SIF+L + YWADILK+
Sbjct:   44 TGLERWMDLGFGIAFLVTAIFAAKRMSWTRQQGGAETTVVTAFYSLILVTSIFRSTWFLIPATVWTPSYTPVAIFAWDTEHPAWVGAFLSEFVLTAGSLSLFSIFILILVYWADILKK 161
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: B8BY52_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY52_THAPS)

HSP 1 Score: 97.8 bits (242), Expect = 9.390e-20
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 2 
Query:  104 ETAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEG---QWVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            ET  E   D VLG  F + A++A  R+  S    G E  +VT FY LI +TA +R++WF+VP + W T Y P  + AF+     W+  FL   +   GSLCL SIF+L + YWADILK+
Sbjct:   30 ETGFEFYSDAVLGFGFLVTAILAAKRMSSSRSQGGAETTVVTAFYSLILLTASLRTIWFIVPGTVWSTNYTPHAVMAFDSANPDWLMQFLEILLVGAGSLCLFSIFILILVYWADILKK 148
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A7S2R9F3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R9F3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.500e-18
Identity = 47/119 (39.50%), Postives = 75/119 (63.03%), Query Frame = 2 
Query:  104 ETAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQ---WVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            ET  E  QD ++G+ F  +++++  R+  S      E  +VT FY LI +T+++R++WF+VP +  +  Y P  + AF  +   W+GAF+ E + + GSLCL SIF+L + YWADILK+
Sbjct:   21 ETEFEYWQDAIVGLCFLSISIISAHRMSWSRKQGHAETTVVTAFYSLILMTSVLRTLWFIVPKALTEPSYVPRAVMAFNSEDPSWIGAFVDEILLSAGSLCLFSIFILILVYWADILKK 139
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A7S2LIW5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.950e-17
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 2 
Query:  104 ETAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEG---QWVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            ET  E   D  LGV F   A++A  R+  S    G E  +VT FY LI +TA +R++W +VP++ W   Y P  + AF+    +W   FL   +   GSLCL SIF+L + YWADILK+
Sbjct:   19 ETTFEFYSDAALGVAFLATAIIAAKRMSYSRSQGGAETTVVTAFYSLILLTATLRTIWLIVPSTFWSPYYTPHAVMAFDPDHPEWFLKFLEVLLVGAGSLCLFSIFILILVYWADILKK 137
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A7S1ZLR8_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLR8_TRICV)

HSP 1 Score: 90.5 bits (223), Expect = 7.300e-17
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 2 
Query:   98 GEETAAELRQDIVLGVIFGLLALVALFRVKDSWGATGTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQ---WVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            G ETA E   D +LG+ F +  ++A  R+  S    G E  +VT FY LI +T+ +RS +F++P   +   Y P    AF+ +   WVGAF+SE + + GSLCL SIF+L + YWADILK+
Sbjct:   52 GLETAFEFWSDGLLGLAFLVTTVIAAKRMAWSRRQGGAETTVVTAFYSLILMTSALRSFFFVIPNDVFMPSYVPVAYMAFDDEHPSWVGAFISEILLSLGSLCLFSIFILILVYWADILKK 172
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: A0A7S0CA17_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA17_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.580e-14
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  206 GTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEGQ--WVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            G E  +VT FY LI +T+ +RS+WFL+P S   T Y P  + AF+    W GAF S+ + + GSLCL SIF+L + YWADILK+
Sbjct:    9 GAETTVVTAFYSLILMTSALRSLWFLIPRSLIATTYTPTPMMAFDPNVNWGGAFFSQILVSAGSLCLFSIFILILVYWADILKK 92
[Close]
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Match: K0TJF1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJF1_THAOC)

HSP 1 Score: 81.6 bits (200), Expect = 5.280e-14
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  206 GTENVIVT-FYVLIFVTAMVRSVWFLVPASAWDTPYAPEDINAFEG--QWVGAFLSEFVATTGSLCLLSIFVLFVCYWADILKQ 448
            G E  +VT FY LI +T+ +RSVWFL+PAS W   Y P  + AF+   QW   FL   +   GSLCL SIF+L + YWADILK+
Sbjct:   16 GAETTVVTAFYSLILLTSSLRSVWFLIPASVWSPYYTPHAVMAFDPGEQWGLKFLEIVLMGLGSLCLFSIFILILVYWADILKK 99
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LRY6_ECTSI6.380e-2748.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZB76_9STRA1.260e-2445.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7FE52_9STRA2.810e-2240.49Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448Z6T5_9STRA2.460e-2047.46Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
B8BY52_THAPS9.390e-2043.70Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2R9F3_9STRA4.500e-1839.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2LIW5_9STRA1.950e-1742.02Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1ZLR8_TRICV7.300e-1742.98Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A7S0CA17_9STRA2.580e-1450.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0TJF1_THAOC5.280e-1451.19Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:290512..294631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1005
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20062.1prot_S-ischiensis_contig84.20062.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 290575..294247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.244485-UTR-S-ischiensis_contig84:290511..2905741622817333.244485-UTR-S-ischiensis_contig84:290511..290574Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 290512..290574 +
1695741034.6916454-UTR-S-ischiensis_contig84:290511..2905741695741034.6916454-UTR-S-ischiensis_contig84:290511..290574Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 290512..290574 +
1622817333.310846-UTR-S-ischiensis_contig84:294247..2946311622817333.310846-UTR-S-ischiensis_contig84:294247..294631Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 294248..294631 +
1695741034.7573867-UTR-S-ischiensis_contig84:294247..2946311695741034.7573867-UTR-S-ischiensis_contig84:294247..294631Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 294248..294631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.2569523-CDS-S-ischiensis_contig84:290574..2906381622817333.2569523-CDS-S-ischiensis_contig84:290574..290638Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 290575..290638 +
1695741034.7022684-CDS-S-ischiensis_contig84:290574..2906381695741034.7022684-CDS-S-ischiensis_contig84:290574..290638Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 290575..290638 +
1622817333.2703938-CDS-S-ischiensis_contig84:291584..2917491622817333.2703938-CDS-S-ischiensis_contig84:291584..291749Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 291585..291749 +
1695741034.715676-CDS-S-ischiensis_contig84:291584..2917491695741034.715676-CDS-S-ischiensis_contig84:291584..291749Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 291585..291749 +
1622817333.285788-CDS-S-ischiensis_contig84:293813..2939691622817333.285788-CDS-S-ischiensis_contig84:293813..293969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 293814..293969 +
1695741034.7309747-CDS-S-ischiensis_contig84:293813..2939691695741034.7309747-CDS-S-ischiensis_contig84:293813..293969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 293814..293969 +
1622817333.2983363-CDS-S-ischiensis_contig84:294074..2942471622817333.2983363-CDS-S-ischiensis_contig84:294074..294247Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 294075..294247 +
1695741034.7448788-CDS-S-ischiensis_contig84:294074..2942471695741034.7448788-CDS-S-ischiensis_contig84:294074..294247Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 294075..294247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20062.1

>prot_S-ischiensis_contig84.20062.1 ID=prot_S-ischiensis_contig84.20062.1|Name=mRNA_S-ischiensis_contig84.20062.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=186bp
MFPASRPRGGNGRRDGRGAAAGYCAGGDLWAAGASGPVPCQGQLGGHGHG
ECDSHLLRPHFCYRNGALRVVSGPCVGLGHSVRPGRHKRLRRAMGGGLPV
GVCGDHRQPMPAVHIRALCVLLGRHTQAGGHIQAGQGAFCWIAARKDTPA
CRTRTIHRQDVDDPGSRPGPRGTRERGKARRGLAL*
back to top

mRNA from alignment at S-ischiensis_contig84:290512..294631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20062.1 ID=mRNA_S-ischiensis_contig84.20062.1|Name=mRNA_S-ischiensis_contig84.20062.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4120bp|location=Sequence derived from alignment at S-ischiensis_contig84:290512..294631+ (Schizocladia ischiensis KU_0333)
CAGCTTCGTCCAGCCAAGTGCTTTGGAAGGGATAGGAGAGTATGTGGGCA
TGAAAGACCCTTGATGTTCCCTGCCTCGCGACCCCGGGGTGGAAATGGGA
GAAGAGACGGCCGCGGAGCTGCGGCAGGTGCGTGGCGACTGCAATCCCGT
CGGGGACTGCCCAACTTAGTGGCTGGATTTGCTCTGTGGCAGTAACGTCG
CTATGGGGTTGGTAGCGAAGATTTTCAAATGCCTCCGCTCCTACATTTAC
CTAGTGGCTGCCTCCGTCCACACGATTCCCGCCCGCAGCGCTTACGAAGA
CTGTCCATTGTCTCCCCCGCCCCCTCGGGCGCGTCCCCCTACTGCCGCTT
CCTCCGCACGGGACACCATGCCGGGCACTTAAAAATGGTAATCTTGACAG
CTCAATTGTTGTCCTGGCTGGGTGCGTGCCCAAGATGCGCACCAAAAGAT
GCATGGTGCATGCATGCACACACGCACCCATGCACGCATGCACACCGAAA
GAATGTGATGCCACCCACGCGCATGCCCACACTACTCCCGGCTCTGCACA
GCACTTGATCCGCCACACAACAAAAAAACCAAGTTTCCTGCCGCTGCTGG
ATTGCCAGGAACACTCAACTCTTGACCACGGCTTGAGTTTACCTCACCCC
CCTTGCTCAGGGTTGGCACTTGACCCCTAAGTGGTGCCCTGTTAGGCCTT
AATTAGGGGTAGCTGGGGTTGATTAGACCTAAAATGAAGGCTAATTGGGC
CCTAATTAACCTCTAAGTGCCAACCCTGCCCTTGCTGGCGCCCCCAGGAT
ATTGTGCTGGGGGTGATCTTTGGGCTGCTGGCCCTGGTCGACAGTTCTTA
TCTATATATCTATCGATAGTCGATATTCGATAGTTTGACCCGCACTAAAT
CCAAGTATTATAAGGACCAACGCGGGGCGAGGTGCAGGCCACGCCACTAG
AGACCTCAGCAGTGGCCCTTCCTTAGCTCGCCAGGGGAAATCCAAGTAGT
TAGCAAACGCCACCCACAAAATCACGCTAGCCTGATAGCTATCTACTGAT
CGATACTCCATCACTGATCACAGGATATTGTGCTGGGGGTGATCTTTGGG
CTGCTGGCGCTAGTGGCCCTGTTCCGTGTCAAGGACAGCTGGGGGGCCAC
GGGCACGGAGAATGTGATAGTCACCTTCTACGTCCTCATTTTTGTTACCG
CAATGGTGCGCTCCGTGTGGTTTCTGGTCCCTGCGTCGGTGAGTACCTCC
AGGGTCGATGAGCGCTATCTCTATGTGCTCGTTTTCGTGACCGCCGTGGT
GCGCTCCGTGTGGTTTCTGGTCAATCACCGTCACCTCGAGAATGTGATAG
TAACCTTCTACGTGCTCATTTTTGTGAACGCCGTGGTGTGCTCCGTGTGG
TTCCTGGTCCCCGCGTCGGTGAGTGCCTACAGGGTCGGTCAGCGTCATCT
CGATAGTGTGACAATCACATTCTACGAGGAATAAGTATGTGCTCATTTTT
GTGACTGCGGTGGTGCGCTCCGTGTGGTTTCTGGTGGCGAGTGCCTCCAG
CGTTGGTCAGCGCTATCATCTCGCGAATGTGATAATCGCCTTCTGCTTGT
GTGCTCGTTTTTGTTACCGTGTGGTGCACCCCGTGTGGTTCCTGGTCCCT
GCGTCGGTGAGTGCCTGGTCTGTGATAATCACCTTCGGCTGTATGTGCTC
ATTTTTGTGTAGAAAACAAAAAAGCGAGTGGAAAATAGAGGTGATCCTAC
TTTCGCGAGTAGGATCACCTCATTTTTGTTACCGCCGTGGTGCGCTCTGT
GTGGTTTCTGGTCCCTGGTCCCTGCGTCGGTGAGCGCCTCCAGGGTCGGT
CAGCGTCATCTATCTCCCAACAACTGGTTGGGTCATCGGCGCGAGGCCGC
TTCTGCACGTCCCGCTTTGTGGCACAAGAGACCCTACCTCCGCGTTTATT
CCCTCCCTCCCTCCTCTTTCCTTTTTTTGATGCTCCCAGGGCTGTCGGCA
TTGCACGCAAGGTTGTGTCGCAAGACAAGCCAATGAGCACATACGAGAAT
ATATATATATATGCTCTATATACCCTGCGAGTGAAGGCGCGTGAAAGGAA
GGGCTTCCGGGGGTGGGGCCTCAACTCGCGTAAATAGGGATGCCCTTTCT
TTCCCACTCGTTCTTCATCTTCGTGCAAAACACTGGCTGGGGCGGGCAGG
ATCACGCTCAACTTAGTGCCACTCCCCTGCCGTAGGCGTGTACAGTAACT
TTATCCTTTTCGCTGTGAGAAAATTGTTACCGGCATTTCCGGAGCGCCCC
TCCTCGTCCTCCGGCTGGCCCACTCTTCCTCCCTGCCACCATATATACCG
CAATCGTCGGAGATATAATGCGCGGGGAAACATTTCTAGCCGGACATGTC
CTGGATTGTCCCGAAGGCCCTCGGACAATTTCCGCCAGGTCCTGAGGGAT
ATTTTCCGAGTTTTTCTGCGTGAATCGGGCCAGTATTCGGCGAGAAACGT
TCTCCCGAAAATTGGCACAAGGGGGCAAGATCTCTCCGACGATTACGGTG
TACTCGTATACTACTAGTGTGTTCTCACATTCGGACGAGGTTTCTCGTCT
CTGTGCATGCGCTGGACCCGAACGATCCTCGTCTTTGCTCCTTCTCGTGG
ATCGCTGGCCAGCTGTACTAGTACGTAGTATATGTATAGATCCTTGTATA
CCGCTCGAGATGGCTGTCATGCTGCCCCCCCCCTCCAATGGCTATGTCGT
CTAGAATTTGGGGGGGGGGGGGCATACTGGCCAACATATTCGCCTCAACA
CCCTCGGGCCAGTTGGGGGGAATTGTTCAGAGCCGTCAATTGGGACAACC
ACTAGGCTTAGTACGAGAACACTCAATCTCACACATGTGCGATTGCACCT
CGTTACAATTTATGTGAATCACCTCCGTCAATTCCCACCGATCTTCGGCA
GCAAAATTCCCGAACGACGACCAGGCCTGGGACACTCCGTACGCCCCGGA
GGACATAAACGCCTGCGAGTTGGGGGCAATTGTTCAGAGAACTTCCGTCA
ATCCCCACTGATTCTCGGTTACAAAATCGAATGCAAAATTCCCCTCACGA
TGACCAGGCCTGGGACACTCCATACGCCCCGGAGGACATGAACGCGGTCG
AAGGGCAGTGGGTGGGGACCTTCCTGTCGGAGTTGGTGAATTGTTGAGAG
AACTGCCAATTCCAATTCTTAAAAATGGGATAGCCACTAGTACGAGAGCA
CTCAATCTCACCCGCGTGCGATTGTACCGCGTTGAATTTATGTGAATCAC
AGGCCTGGGACACTCCGTACGCCCCGGAAGACATAAACGCCTTCGAAGGG
CAATGGGTGGGGGCCTTCCTGTCGGAGTTTGTGGCGACCACAGGCAGCCT
ATGCCTGCTGTCCATATTCGTGCTCTTTGTGTGCTACTGGGCAGACATAC
TCAAGCAGGTCAGTGCTCTTCGCGTGCTGCTGGGCGGACAATGCTCAACC
AGGTTAGGGCACTGCGATGTGATATGCCTGCTGTCCATACTCGTGCTCTT
TGTGTGCCACTAGGCGGACACATTCAAGCAGGTCAGGGCGCCTTCTGCTG
GATTGCCGCAAGGAAGGATACCCCAGCATGTAGGACACGAACGATCCACC
GGCAGGATGTTGATGATCCAGGCAGCAGGCCAGGTCCCCGTGGCACAAGG
GAGAGAGGAAAAGCCAGGAGGGGACTTGCCCTATAGACGAACAGCAGGCA
AGACAGGGACATAGCAGAGAGTGTCCTACTGTACTGTACAATAAAAGGCA
AAAACGATAGAGTGCAGGGTCGTAGACAACTAGAAAGGGACGCGTACTCA
TTATATGAATCACATACCGTATTCTGTACCTGCCTGCAACTTTTGCAGGT
ATTCCGGGACACGTCGCACCCCACCCAGCCCATGCCGGACTTCCAAGTAC
CTCGGTATGAAGTACTTCGTACTTCGAAGTACAATTGATACTACATAGTA
TGAATCACATACTTGGTACTGGACCTGAGTACTCGTACACACCTGCCTGT
TGTAACTGCCTTGCAGGTGTTCCGGGACACGTCGCACCCCACCCATCCCA
TGTCGGACTTCAATCGCGTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig84:290512..294631+

>mRNA_S-ischiensis_contig84.20062.1 ID=mRNA_S-ischiensis_contig84.20062.1|Name=mRNA_S-ischiensis_contig84.20062.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig84:290512..294631+ (Schizocladia ischiensis KU_0333)
ATGTTCCCTGCCTCGCGACCCCGGGGTGGAAATGGGAGAAGAGACGGCCG
CGGAGCTGCGGCAGATGTTCCCTGCCTCGCGACCCCGGGGTGGAAATGGG
AGAAGAGACGGCCGCGGAGCTGCGGCAGGATATTGTGCTGGGGGTGATCT
TTGGGCTGCTGGCGCTAGTGGCCCTGTTCCGTGTCAAGGACAGCTGGGGG
GCCACGGGCACGGAGAATGTGATAGTCACCTTCTACGTCCTCATTTTTGT
TACCGCAATGGTGCGCTCCGTGTGGTTTCTGGTCCCTGCGTCGGATATTG
TGCTGGGGGTGATCTTTGGGCTGCTGGCGCTAGTGGCCCTGTTCCGTGTC
AAGGACAGCTGGGGGGCCACGGGCACGGAGAATGTGATAGTCACCTTCTA
CGTCCTCATTTTTGTTACCGCAATGGTGCGCTCCGTGTGGTTTCTGGTCC
CTGCGTCGGCCTGGGACACTCCGTACGCCCCGGAAGACATAAACGCCTTC
GAAGGGCAATGGGTGGGGGCCTTCCTGTCGGAGTTTGTGGCGACCACAGG
CAGCCTATGCCTGCTGTCCATATTCGTGCTCTTTGTGTGCTACTGGGCAG
ACATACTCAAGCAGGCCTGGGACACTCCGTACGCCCCGGAAGACATAAAC
GCCTTCGAAGGGCAATGGGTGGGGGCCTTCCTGTCGGAGTTTGTGGCGAC
CACAGGCAGCCTATGCCTGCTGTCCATATTCGTGCTCTTTGTGTGCTACT
GGGCAGACATACTCAAGCAGGCGGACACATTCAAGCAGGTCAGGGCGCCT
TCTGCTGGATTGCCGCAAGGAAGGATACCCCAGCATGTAGGACACGAACG
ATCCACCGGCAGGATGTTGATGATCCAGGCAGCAGGCCAGGTCCCCGTGG
CACAAGGGAGAGAGGAAAAGCCAGGAGGGGACTTGCCCTATAGGCGGACA
CATTCAAGCAGGTCAGGGCGCCTTCTGCTGGATTGCCGCAAGGAAGGATA
CCCCAGCATGTAGGACACGAACGATCCACCGGCAGGATGTTGATGATCCA
GGCAGCAGGCCAGGTCCCCGTGGCACAAGGGAGAGAGGAAAAGCCAGGAG
GGGACTTGCCCTATAG
back to top