mRNA_S-ischiensis_contig84.20059.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20059.1
Unique NamemRNA_S-ischiensis_contig84.20059.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:264512..266877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionG2-like domain Myb transcription factor
Ec32 orthologEc-15_000410.1
Hectar predicted targeting categoryother localisation
Exons4
Model size578
Cds size576
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20059.1prot_S-ischiensis_contig84.20059.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 264514..266877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.173603-CDS-S-ischiensis_contig84:264513..2648151622817333.173603-CDS-S-ischiensis_contig84:264513..264815Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 264514..264815 -
1695741034.6327255-CDS-S-ischiensis_contig84:264513..2648151695741034.6327255-CDS-S-ischiensis_contig84:264513..264815Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 264514..264815 -
1622817333.187672-CDS-S-ischiensis_contig84:265147..2652231622817333.187672-CDS-S-ischiensis_contig84:265147..265223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 265148..265223 -
1695741034.6460872-CDS-S-ischiensis_contig84:265147..2652231695741034.6460872-CDS-S-ischiensis_contig84:265147..265223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 265148..265223 -
1622817333.200597-CDS-S-ischiensis_contig84:265882..2659601622817333.200597-CDS-S-ischiensis_contig84:265882..265960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 265883..265960 -
1695741034.6628182-CDS-S-ischiensis_contig84:265882..2659601695741034.6628182-CDS-S-ischiensis_contig84:265882..265960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 265883..265960 -
1622817333.2146447-CDS-S-ischiensis_contig84:266757..2668771622817333.2146447-CDS-S-ischiensis_contig84:266757..266877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 266758..266877 -
1695741034.677232-CDS-S-ischiensis_contig84:266757..2668771695741034.677232-CDS-S-ischiensis_contig84:266757..266877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 266758..266877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20059.1

>prot_S-ischiensis_contig84.20059.1 ID=prot_S-ischiensis_contig84.20059.1|Name=mRNA_S-ischiensis_contig84.20059.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=192bp
RGAAVVREALKIPEEVKRLIERLDDQQIRHNAELVAQCVQVQCSTQLALK
HAIEKQKRLQRDIIKKVRDLGLPYPTSGLPGLDEHPGDVGEGLNRPQWLH
AQAAPPPAPHAGRGTAAAATAATAEMGPAAYSDARGGARDTGPQQNGGAG
PGAGLGLQYAHPRGSMSAEALMALGGHTPSADERAGGTDLGG
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mRNA from alignment at S-ischiensis_contig84:264512..266877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20059.1 ID=mRNA_S-ischiensis_contig84.20059.1|Name=mRNA_S-ischiensis_contig84.20059.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2366bp|location=Sequence derived from alignment at S-ischiensis_contig84:264512..266877- (Schizocladia ischiensis KU_0333)
CGCGGCGCGGCGGTGGTGCGGGAGGCGCTCAAGATCCCGGAGGAGGTCAA
GAGGCTGATTGAGAGGCTGGACGACCAACAGATTCGCCACAACGCGGAGC
TCGTTGCGCAGTGTGTACAGGTGATGTTTCCTCCGCTTGTACTGTACTAG
TAGAGCTCTAGCTCCCAGGTATTTGTCATACGAGGGCTATACTTCGAAGT
GCTCACTTGCAGTGCATACGTTGCTGACTACTGTACAGTAGTACTCGTAG
AGTATTAACAGTAACAACCCAGGTTTTGCAAGAAACTGCTGGTGAGCCTT
GCAGCAGTACTGCACCGCGCGGCACTCATATTGCTTGGGAGTAGTCCATT
TCAGGTGCTTCCAAGTACGTCCAAGCGTATAGACTCCGTCTCGACCGAGG
CGCGTGGCCAATGGTCTCGGGACAGGACAACGTGAGTACATATACTTCGA
AGCACATAGGTATGCCGTTTTTGCCCTGCGAGGGGAAGAAGGGCTTCGTT
GAGTTCCATTTCGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCGCCGC
TTGTCTACCACTCAAAATAGGTATACCGGTTCAATATGTTTGTCCTGGAT
ATTGATTTGCCAACACTGGTTAACACCCCCGGGGAGCACGTCATGCGCCC
CCCGCCTCCCCCAGCACATTGTCTTACTCCGTAAGCCCAACACAACGACT
CAAGACTCCATCACCACCGCCGCAGCCACCACCACCACCCCCGCATCTTA
TTCCATAAACTCAACACGACGACTCAAAACGCCATCACCACCGCCGCCGC
TGCCACCGCCACCACCACCACCACCACCACCGCCACCACCACCGCTGCCA
CCACCACCACCGCCGCCGCCACCACCACCACCACCCCCGCGTCTTTCGGC
GTGGCCGGGTGGAGCAGGTGCAGTGCAGCACGCAGCTGGCGCTCAAGCAC
GCGATCGAGAAGCAGAAACGCCTGCAAAGAGATATCATCAAGAAGGTGAG
GAGATTCCTGCTCTGCTAGCTGTGGTGGCGAGGACCGGTGTCGCAGCGAT
TGAACTGTGGACGCGGCATTTAGAACTTGACCTTCGGCGGGCTTTGTGCC
AGTGTCGTACTTCGAAGTAGCGTTAACAGGAACAACCACGGCGAGGTGCA
GGCCAAGTCACTTAAGACCTCAGAGTGGCCCTTCCCTATAGCTCAGTAGT
TGCAAACAGGGGTCATACGCTAGTACGAGTGGGTATTTGAAGGCGAGGAG
ATTAGCTCGGCTTGCATTTGCACTACTGTGTATCGAGCACTGGAGTAGGC
TGACCGCATCGCCCTAACCCCAAAACCGGGGCTCACGAAGGTGGTCCTTC
CTCGGAAGTCTACGCTACCGTGCGGTTTGGAACTTATGTGGGTACTTCCA
AGTGAAGCGGTATACTCGTACTTCGAAGTATACTTCCAAACACTTCGAGA
CAGTACCTGGCACAGGATAGCGCGCGGTGGGAAGTCAGTGGCTCACCAAA
ACGCCCCCAAGTGCAAGAGCAGGATGTACTGTATGTACTGCAGTACTTGG
AAGTATTGGAGCAGCGTACGGTACGGAACATAGCGTAGTATACCGCAGCA
GCACATTCTCTGCTCACGGCGCTCACGTGTCCCTCCCCCCATCTGTGGCT
ACAGGTCAGAGACCTCGGGCTTCCGTACCCCACAAGCGGCTTGCCAGGGC
TGGACGAGCACCCGGGGGATGTGGGCGAAGGTAAGTAGGGACCGAGCGCC
CGCAGGGGGAGCCTGGCCGGGTTTCACGCTGGACTGGAGGCGTCTTTCAT
AACCCGTTTCATGGATTGGTTTTGGCTGGGTTCCTGTACAGTACAATACC
CAAGGCCGCGGTCAACGTTTTGCATAGGCCACGCTTGCGCCGGCAACGCA
GTACCGGTGACATCACGCGTGGCCCTGCCTTGGGACAGGTTGCCTTTCCT
TCCTCCCTGCCGGCCTGCCTGCCTGCCTATGATGCCTCTGTGCCGACCCG
CTGTCCTTCCTGCCTACTGTAGCTCACCCGCCTTACCTCCGCGCCCCCCT
GCGCGCTCCCAGGCCTCAACCGGCCTCAGTGGCTTCACGCACAAGCGGCG
CCACCACCGGCACCGCACGCAGGGAGAGGCACCGCTGCCGCCGCCACCGC
CGCCACTGCCGAGATGGGGCCGGCGGCGTACAGCGACGCGCGGGGAGGCG
CACGAGACACGGGCCCGCAGCAGAACGGGGGGGCGGGCCCGGGAGCAGGG
CTGGGGCTGCAGTACGCCCATCCTAGAGGGAGCATGTCCGCCGAGGCACT
CATGGCGCTCGGCGGGCACACCCCATCTGCTGATGAGAGGGCAGGCGGGA
CCGACCTCGGCGGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:264512..266877-

>mRNA_S-ischiensis_contig84.20059.1 ID=mRNA_S-ischiensis_contig84.20059.1|Name=mRNA_S-ischiensis_contig84.20059.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1152bp|location=Sequence derived from alignment at S-ischiensis_contig84:264512..266877- (Schizocladia ischiensis KU_0333)
CGCGGCGCGGCGGTGGTGCGGGAGGCGCTCAAGATCCCGGAGGAGGTCAA
GAGGCTGATTGAGAGGCTGGACGACCAACAGATTCGCCACAACGCGGAGC
TCGTTGCGCAGTGTGTACAGCGCGGCGCGGCGGTGGTGCGGGAGGCGCTC
AAGATCCCGGAGGAGGTCAAGAGGCTGATTGAGAGGCTGGACGACCAACA
GATTCGCCACAACGCGGAGCTCGTTGCGCAGTGTGTACAGGTGCAGTGCA
GCACGCAGCTGGCGCTCAAGCACGCGATCGAGAAGCAGAAACGCCTGCAA
AGAGATATCATCAAGAAGGTGCAGTGCAGCACGCAGCTGGCGCTCAAGCA
CGCGATCGAGAAGCAGAAACGCCTGCAAAGAGATATCATCAAGAAGGTCA
GAGACCTCGGGCTTCCGTACCCCACAAGCGGCTTGCCAGGGCTGGACGAG
CACCCGGGGGATGTGGGCGAAGGTCAGAGACCTCGGGCTTCCGTACCCCA
CAAGCGGCTTGCCAGGGCTGGACGAGCACCCGGGGGATGTGGGCGAAGGC
CTCAACCGGCCTCAGTGGCTTCACGCACAAGCGGCGCCACCACCGGCACC
GCACGCAGGGAGAGGCACCGCTGCCGCCGCCACCGCCGCCACTGCCGAGA
TGGGGCCGGCGGCGTACAGCGACGCGCGGGGAGGCGCACGAGACACGGGC
CCGCAGCAGAACGGGGGGGCGGGCCCGGGAGCAGGGCTGGGGCTGCAGTA
CGCCCATCCTAGAGGGAGCATGTCCGCCGAGGCACTCATGGCGCTCGGCG
GGCACACCCCATCTGCTGATGAGAGGGCAGGCGGGACCGACCTCGGCGGC
GCCTCAACCGGCCTCAGTGGCTTCACGCACAAGCGGCGCCACCACCGGCA
CCGCACGCAGGGAGAGGCACCGCTGCCGCCGCCACCGCCGCCACTGCCGA
GATGGGGCCGGCGGCGTACAGCGACGCGCGGGGAGGCGCACGAGACACGG
GCCCGCAGCAGAACGGGGGGGCGGGCCCGGGAGCAGGGCTGGGGCTGCAG
TACGCCCATCCTAGAGGGAGCATGTCCGCCGAGGCACTCATGGCGCTCGG
CGGGCACACCCCATCTGCTGATGAGAGGGCAGGCGGGACCGACCTCGGCG
GC
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