mRNA_S-ischiensis_contig84.20043.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20043.1
Unique NamemRNA_S-ischiensis_contig84.20043.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: D8LQ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ11_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.480e-22
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -3 
Query:  914 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVS 1078
            G+IPDRVCDN KCRRPYHP CL  WLQ LPTSRVSFDT+FGQCPYCS+PISV+ +
Sbjct:  364 GAIPDRVCDNAKCRRPYHPKCLFVWLQGLPTSRVSFDTIFGQCPYCSDPISVKFA 418
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A7S1YXT5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXT5_TRICV)

HSP 1 Score: 90.1 bits (222), Expect = 2.690e-18
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = -3 
Query:  911 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVSS 1078
            G+IPD +C NP C R YH +CL EWL ALP +RVSFD +FG CPYC EPISVRV S
Sbjct:   67 GAIPDAMCGNPSCARSYHETCLFEWLHALPGARVSFDRVFGTCPYCCEPISVRVRS 122
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A2R6WJG8_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WJG8_MARPO)

HSP 1 Score: 93.2 bits (230), Expect = 1.620e-17
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = -3 
Query:  908 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVSSG 1078
            GS+PDRVCDNP C RP+H +CLLEWL+++ T+R SFD +FG CPYCS PI+V+ + G
Sbjct:  319 GSVPDRVCDNPNCARPFHNTCLLEWLRSITTTRQSFDVLFGHCPYCSHPIAVKSTHG 375
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A835YLD4_9STRA (WD-repeat region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-17
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = -3 
Query:  923 TGSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISV 1081
            +G++PDRVCDN +CRRPYHP+CLL WLQ LP SR SF T FG CPYCSE IS 
Sbjct:  350 SGAVPDRVCDNARCRRPYHPACLLAWLQGLPESRTSFGTTFGTCPYCSEDISA 402
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A7S2TI73_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TI73_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 3.210e-17
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  914 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVS 1078
            G +PDR+CDN KC RPYH +CL+EWL+A+P ++ SF+T+FG+CPYC  PI+V  S
Sbjct:   66 GEMPDRMCDNAKCGRPYHRACLVEWLRAIPNTQQSFNTLFGKCPYCQSPITVDAS 120
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: C3XZ04_BRAFL (Uncharacterized protein n=7 Tax=Branchiostoma TaxID=7737 RepID=C3XZ04_BRAFL)

HSP 1 Score: 91.7 bits (226), Expect = 4.710e-17
Identity = 33/56 (58.93%), Postives = 51/56 (91.07%), Query Frame = -3 
Query:  905 IPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVSSGR 1072
            IPDR CD+P+C RP+H +CL+EWL+ALP++R+SF+ +FG+CPYCS+PI+V++++ R
Sbjct:  303 IPDRACDDPRCSRPFHATCLIEWLRALPSTRMSFNVIFGECPYCSKPITVKMTAAR 358
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A3L7IMH1_CRIGR (FANCL n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A3L7IMH1_CRIGR)

HSP 1 Score: 87.4 bits (215), Expect = 7.150e-17
Identity = 34/55 (61.82%), Postives = 47/55 (85.45%), Query Frame = -3 
Query:  914 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVS 1078
            G+IPD+VCDNP+C +P+H  CL EWL+ L TSR SF+ +FG+CPYCS+PI++R+S
Sbjct:  119 GAIPDQVCDNPQCGQPFHQICLYEWLRGLSTSRQSFNILFGECPYCSKPITLRMS 173
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A7S0FI31_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FI31_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.230e-17
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = -3 
Query:  911 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVSS 1078
            G+IPD +C NP C R YH +CL EWL +LP +RVSFD +FG CPYCSE +SVRV S
Sbjct:  104 GAIPDAMCGNPSCARSYHETCLFEWLHSLPDARVSFDRVFGTCPYCSESLSVRVLS 159
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A7S1XN52_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XN52_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.760e-17
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = -3 
Query:  920 GSIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVR 1078
            G+IPD+ CD+ +CRR YH  CL EWL ALPT RV+F+ +FG+CPYCSE ISV+
Sbjct:   54 GAIPDKFCDHARCRRAYHSPCLYEWLHALPTCRVTFENVFGECPYCSEVISVK 106
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BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Match: A0A5C6PHU4_9TELE (E3 ubiquitin-protein ligase FANCL n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6PHU4_9TELE)

HSP 1 Score: 83.2 bits (204), Expect = 1.760e-16
Identity = 31/54 (57.41%), Postives = 46/54 (85.19%), Query Frame = -3 
Query:  914 SIPDRVCDNPKCRRPYHPSCLLEWLQALPTSRVSFDTMFGQCPYCSEPISVRVS 1075
            SIPD+VC++P+C +P+H +CL EWL+ LP+SR SF  +FG CPYCS+PI+V+++
Sbjct:   18 SIPDQVCNDPRCGQPFHQACLYEWLRGLPSSRQSFSVIFGDCPYCSKPITVKMA 71
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ11_ECTSI8.480e-2280.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1YXT5_TRICV2.690e-1867.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A2R6WJG8_MARPO1.620e-1763.16Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A835YLD4_9STRA2.100e-1771.70WD-repeat region-domain-containing protein n=1 Tax... [more]
A0A7S2TI73_9EUKA3.210e-1760.00Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
C3XZ04_BRAFL4.710e-1758.93Uncharacterized protein n=7 Tax=Branchiostoma TaxI... [more]
A0A3L7IMH1_CRIGR7.150e-1761.82FANCL n=1 Tax=Cricetulus griseus TaxID=10029 RepID... [more]
A0A7S0FI31_9STRA7.230e-1764.29Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1XN52_9STRA8.760e-1764.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A5C6PHU4_9TELE1.760e-1657.41E3 ubiquitin-protein ligase FANCL n=1 Tax=Takifugu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:97001..98326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1084
Cds size546
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20043.1prot_S-ischiensis_contig84.20043.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 97538..98326 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817332.9383304-UTR-S-ischiensis_contig84:97000..975371622817332.9383304-UTR-S-ischiensis_contig84:97000..97537Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 97001..97537 -
1695741034.4492483-UTR-S-ischiensis_contig84:97000..975371695741034.4492483-UTR-S-ischiensis_contig84:97000..97537Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 97001..97537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817332.9495115-CDS-S-ischiensis_contig84:97537..977351622817332.9495115-CDS-S-ischiensis_contig84:97537..97735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 97538..97735 -
1695741034.4585757-CDS-S-ischiensis_contig84:97537..977351695741034.4585757-CDS-S-ischiensis_contig84:97537..97735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 97538..97735 -
1622817332.9617627-CDS-S-ischiensis_contig84:97978..983261622817332.9617627-CDS-S-ischiensis_contig84:97978..98326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 97979..98326 -
1695741034.4687262-CDS-S-ischiensis_contig84:97978..983261695741034.4687262-CDS-S-ischiensis_contig84:97978..98326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 97979..98326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20043.1

>prot_S-ischiensis_contig84.20043.1 ID=prot_S-ischiensis_contig84.20043.1|Name=mRNA_S-ischiensis_contig84.20043.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
DPGSPKPPCHPPRRAPGTWGRRRGGYKYRNRRRDLAPPCQFSGEVFSPNT
GWIRTGRLGKIPSGPGGICPRDFGITRDLRGEKYSPENCPGGGRSPRRLR
YCRPPGGRLVRWGMRKYQLLPHGSDGISTSIQINLFVDNPDLFEWYFEVD
KRRVPGPVPKGPSRSVLVLIYISIDTRYSIV*
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mRNA from alignment at S-ischiensis_contig84:97001..98326-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20043.1 ID=mRNA_S-ischiensis_contig84.20043.1|Name=mRNA_S-ischiensis_contig84.20043.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1326bp|location=Sequence derived from alignment at S-ischiensis_contig84:97001..98326- (Schizocladia ischiensis KU_0333)
GACCCAGGATCACCTAAACCTCCTTGCCATCCTCCTCGGCGCGCTCCGGG
CACTTGGGGGCGGAGGCGCGGGGGCTACAAGTACCGTAATCGGCGGAGAG
ATCTTGCCCCCCCATGCCAATTTTCGGGAGAAGTTTTCTCGCCGAATACT
GGTTGGATTCGCACGGGAAGACTCGGAAAAATACCCTCAGGACCTGGAGG
TATTTGTCCGAGAGATTTCGGGATAACTAGGGACCTGCGCGGCGAGAAAT
ATTCTCCCGAAAATTGTCCCGGGGGGGGAAGGTCTCCCCGCCGATTGCGG
TACTGCCGTCCCCCAGGCGGCCGACTGGTCAGGTGGGGGATGCGGAAGGT
GCGGGAAGTTCTGTGCAACTCCTACAATGCACCCTCGGTAACTCCGACGA
TGCACCCGCGGAGTTCTGTGCAACTCCGAGGGTGCATCGTTGGAGTTGCC
GAGGGTGCATTGTACTGTGCAACTCCGAGGGTGCATCGTCGGAGTTGCCG
AAGGTGCATTGTAGAGTAGGAGTTGCACAGGACTTCCCGCACCTTCCGCA
CCCCCCCGCCTGACCAGTTGGCCGCCCCCGGGGGACGGTAGTACCAGCTG
TTGCCTCACGGCAGTGATGGAATATCTACTAGTATTCAAATCAACCTGTT
TGTCGACAACCCAGATCTATTTGAGTGGTACTTCGAAGTAGATAAGCGGC
GAGTCCCAGGCCCCGTGCCAAAAGGCCCGTCCCGAAGTGTACTCGTACTG
ATCTATATATCTATCGATACGCGATATTCGATAGTTTGACCCACACTAGA
TCCAAAGTAGCTAGCAACGCCACCCACAAAATCAGTCAAGCCCGATAACT
ATCTACTGATCGATATCCCATCACTGCTTGACAGGGCCAGCCTGGCGGCG
GACCCCGGCGAGTAACCATGCTACAAAACTGCGATCGCTATTCTTCGTGC
CCGGGCCGCCCTATGAAGGACGCATCGGATGACCGCGAAATGTTGACACA
TGAAAGAGCTCGATGAGTACGCTCATTCGCGCTGTAGATTTCGTACCACA
ACATCGCATGGGCCGAGCAACAGGTCAATCGATATTCGATGAAACTATCT
GGGCGAAAAAAATCACATTTGTAGTATGGCTACTGGCGAGTCACTCAGCG
GCCGGACGACACCCGGACACTGATGGGCTCCGAGCAGTAGGGGCACTGCC
CGAACATGGTGTCAAAGGATACCCGGCTCGTCGGGAGGGCCTGCAGCCAC
TCCAAGAGGCACGACGGGTGGTACGGTCTCCGGCACTTTGGGTTGTCGCA
CACGCGGTCTGGGATGCTGCCGGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:97001..98326-

>mRNA_S-ischiensis_contig84.20043.1 ID=mRNA_S-ischiensis_contig84.20043.1|Name=mRNA_S-ischiensis_contig84.20043.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig84:97001..98326- (Schizocladia ischiensis KU_0333)
GACCCAGGATCACCTAAACCTCCTTGCCATCCTCCTCGGCGCGCTCCGGG
CACTTGGGGGCGGAGGCGCGGGGGCTACAAGTACCGTAATCGGCGGAGAG
ATCTTGCCCCCCCATGCCAATTTTCGGGAGAAGTTTTCTCGCCGAATACT
GGTTGGATTCGCACGGGAAGACTCGGAAAAATACCCTCAGGACCTGGAGG
TATTTGTCCGAGAGATTTCGGGATAACTAGGGACCTGCGCGGCGAGAAAT
ATTCTCCCGAAAATTGTCCCGGGGGGGGAAGGTCTCCCCGCCGATTGCGG
TACTGCCGTCCCCCAGGCGGCCGACTGGTCAGGTGGGGGATGCGGAAGGA
CCCAGGATCACCTAAACCTCCTTGCCATCCTCCTCGGCGCGCTCCGGGCA
CTTGGGGGCGGAGGCGCGGGGGCTACAAGTACCGTAATCGGCGGAGAGAT
CTTGCCCCCCCATGCCAATTTTCGGGAGAAGTTTTCTCGCCGAATACTGG
TTGGATTCGCACGGGAAGACTCGGAAAAATACCCTCAGGACCTGGAGGTA
TTTGTCCGAGAGATTTCGGGATAACTAGGGACCTGCGCGGCGAGAAATAT
TCTCCCGAAAATTGTCCCGGGGGGGGAAGGTCTCCCCGCCGATTGCGGTA
CTGCCGTCCCCCAGGCGGCCGACTGGTCAGGTGGGGGATGCGGAAGTACC
AGCTGTTGCCTCACGGCAGTGATGGAATATCTACTAGTATTCAAATCAAC
CTGTTTGTCGACAACCCAGATCTATTTGAGTGGTACTTCGAAGTAGATAA
GCGGCGAGTCCCAGGCCCCGTGCCAAAAGGCCCGTCCCGAAGTGTACTCG
TACTGATCTATATATCTATCGATACGCGATATTCGATAGTTTGATACCAG
CTGTTGCCTCACGGCAGTGATGGAATATCTACTAGTATTCAAATCAACCT
GTTTGTCGACAACCCAGATCTATTTGAGTGGTACTTCGAAGTAGATAAGC
GGCGAGTCCCAGGCCCCGTGCCAAAAGGCCCGTCCCGAAGTGTACTCGTA
CTGATCTATATATCTATCGATACGCGATATTCGATAGTTTGA
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