mRNA_S-ischiensis_contig83.20034.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20034.1
Unique NamemRNA_S-ischiensis_contig83.20034.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: D8LD33_ECTSI (50S ribosomal protein L4P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD33_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 5.330e-64
Identity = 121/212 (57.08%), Postives = 152/212 (71.70%), Query Frame = 1 
Query:  298 NDMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKL 933
            +D+EV V +  DG+ +  + L   VFGVP+RRDVVHEVV+WQ A  RKGN +TK I E+SGSG KVRPQKG G+ARAGH RPPHWR GAKAHGP+ RD+SFKLNKKF  LGL+VALSARLREG+L VVDDL+    +  KT  + +T+K RG D     + G +   +F ++ +NI G KV+ A+GANV+DI+K   LVLT   V  L+E L
Sbjct:   96 DDLEVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKS---DGFKTSAMIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARGANVHDIIKRPNLVLTQDAVTHLEEFL 304
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A6H5KTL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL0_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 7.050e-63
Identity = 120/212 (56.60%), Postives = 153/212 (72.17%), Query Frame = 1 
Query:  298 NDMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKL 933
            +D+EV V +  DG+ +  + L   VFGVP+RRDVVHEVV+WQ A  RKGN +TK I E+SGSG KVRPQKG G+ARAGH RPPHWR GAKAHGP+ RD+SFKLNKKF  LGL+VALSARLREG+L VVDDL+    +  +T  + +T+K RG D     + G +   +F ++ +NI G+KV+ A+GANV+DI+K   LVLT   V  L+E L
Sbjct:  174 DDLEVEVVAWSDGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKS---DGFRTSAMIKTIKARGIDGPVTFMVGGDPQVEFMRSVSNIVGVKVLSARGANVHDIIKRPNLVLTQDAVTHLEEFL 382
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A835ZAZ5_9STRA (Ribosomal protein L4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.230e-56
Identity = 136/304 (44.74%), Postives = 178/304 (58.55%), Query Frame = 1 
Query:   94 TRCQ---ACAGPFSRLWRPPAHLQQ-------------RWSSQAPAGIGQDGLEDAPLPPNLKLADPA------VMEQHLPPXXXXXSDGNDMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPK-LRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLA 936
            TRC    + A PFS+ ++  A  +Q              +SS       +D LE   LPPNLKL+            + LPP     +      V V  L  G +++ + LD  +FG  +RRDVVH VV+WQ A  R+G AKTK ISEVSGSG K+RPQKGSG AR GH+RPPHWR GAKAHGPK  RDWS+KL+KK R +GL+VALSA+LRE KL VVD L         TGP A  L+  G   SALL+ G   ++    A  ++ G+K++    AN YDI+++ +LV++ AG++ L EKLA
Sbjct:   49 TRCAVGPSAALPFSKAFQALAAARQIASHKCSPGGSAAHFSSNPQRSAAEDPLE---LPPNLKLSLKCKQLIRDARRKQLPPAEPSFT------VPVIDLVTGEEVDTVALDPFIFGHEIRRDVVHAVVRWQLACRRQGAAKTKLISEVSGSGKKMRPQKGSGQARCGHKRPPHWRGGAKAHGPKGNRDWSYKLHKKVRKMGLRVALSAKLRERKLVVVDALTTDGA--AATGPTAERLRALGLLRSALLVDGAAPEDALAHATRHLPGVKLLWGGAANCYDILRSDRLVVSRAGLQFLTEKLA 341
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A6G0XNJ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNJ9_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.180e-52
Identity = 118/273 (43.22%), Postives = 165/273 (60.44%), Query Frame = 1 
Query:  136 RPPAHLQQRWSSQAPAGIGQDGLEDAP----LPPNLKLADPAVMEQHLPPXXXXXSDGNDMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLARE 942
            +P   + + +S+ APA +  + L+ AP      P +   +P V ++          DGN ++  + +  DG+ +  L L R VFG P+R+D++H VVKWQ AN R GN KTKT SEVSGS  KV  QKGSG AR G+RRPP WR G +AHGP +RD S+ L KK R +GL+VALS +L EGKL++V DL     EE KT P+   L+ +GWD+ AL I G+    +F  +  N+  + VI+ +  NVY I+    LV++   VK L+E+LA E
Sbjct:   15 KPATMIARHFSAAAPAVLPAN-LQLAPEKPVRAPRVVTREPVVFDK----------DGN-IQAKILTFADGAAVGSLTLSRSVFGTPVRKDLLHRVVKWQLANRRSGNHKTKTRSEVSGSTKKVWKQKGSGRARVGNRRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEGKLAIVKDLHV---EEDKTKPMKSLLETKGWDH-ALFIDGDETSRNFVLSTRNLPNVDVIRQKNINVYAILHKDVLVVSEKTVKYLEERLAVE 271
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A024UTI0_9STRA (50S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UTI0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 5.300e-51
Identity = 107/209 (51.20%), Postives = 138/209 (66.03%), Query Frame = 1 
Query:  316 VTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLARE 942
            V S  DGS ++ + L+R VFG P+R+D++H VVKWQ AN R GN KTKT SEVSGS  K   QKGSG AR G+ RPP WR G +AHGP +RD S+ L KK R +GL+VALS +L EGKL++V DL  PE E+ KT  +   L  +GWD+ AL + GE  D +F  A  N+  + +I+ Q  NVY I+    LVL+   VK L+E+LA E
Sbjct:   85 VLSFADGSVVDTMTLNRNVFGCPVRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEGKLAIVRDLN-PESEKTKT--MKALLTSKGWDH-ALFVDGEEADRNFVLATRNLPTVDIIRQQNINVYAILHKDLLVLSEKTVKYLEERLAVE 289
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A485KYQ5_9STRA (Aste57867_13666 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYQ5_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.820e-50
Identity = 113/244 (46.31%), Postives = 150/244 (61.48%), Query Frame = 1 
Query:  217 LPPNLKLA-DPAVMEQHLPPXXXXXSDGN-DMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLARE 942
            LPPNL LA +  + E  +        D N +++  V S +DG+ +  L L R VFG P+R+D++  VVKWQ AN R GN KTKT SEVSGS  K   QKGSG AR G+ RPP WR G +AHGP +RD S+ L KK R +GL+VALSA+L EGKL++V DL   + E  KT  +   L  +GWD+ AL I GE    +F  +  N+  + VI+ +  +VY I+    LVL+   VK L+E+LA E
Sbjct:   36 LPPNLHLAPEKPIREPRIVTREPVAFDSNGNIQAKVLSFNDGASVGSLTLSRSVFGAPIRKDILQRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSAKLAEGKLAIVQDL---DVESEKTKAMKELLATKGWDH-ALFIDGEEASRNFVLSTRNLPHVDVIRQRNISVYSILHKDVLVLSEKTVKYLEERLAVE 275
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A1V9ZG37_9STRA (50S ribosomal protein L4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZG37_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.380e-49
Identity = 111/246 (45.12%), Postives = 148/246 (60.16%), Query Frame = 1 
Query:  211 APLPPNLKLAD--PAVMEQHLPPXXXXXSDGNDMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLARE 942
            A +P NL LA+  P    + +           +++  + S  DG+Q+  L L+R VFG P+R+D++  VVKWQ AN R GN KTKT SEVSGS  K   QKGSG AR G+ RPP WR G +AHGP +RD S+ L KK R +GL+VALSA+L EGKL++V DL     E  KT    + L+ +GWD  AL + G    ++F  A  N+  + VI+ Q  NVY I+    LVL+   VK L+E+LA E
Sbjct:   22 AAIPANLILAEEKPTPAPRFVTREPLTFDAAGNVQAKLLSFKDGAQIGTLSLNRSVFGAPIRKDILQRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSAKLAEGKLAIVQDLSI---ESEKTKAAKQLLESKGWD-DALFVDGAEAPKNFVLATRNLARVDVIREQQVNVYSILHKDVLVLSEKTVKYLEERLAVE 263
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A1V9ZKR4_9STRA (50S ribosomal protein L4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZKR4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.430e-48
Identity = 114/257 (44.36%), Postives = 150/257 (58.37%), Query Frame = 1 
Query:  211 APLPPNLKLA-------------DPAVMEQHLPPXXXXXSDGNDMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLARE 942
            A LP NL LA             DP V +          ++GN ++  V S  DGS++  L L+R VFG P+R+D++H VVKWQ AN R GN KTKT SEVSGS  K   QKGSG AR G+ RPP WR G +AHGP +RD S+ L KK R +GL+VALS ++ EGKL++V DL   E E  KT    + L+ +GWD  AL + G    ++F  A  N+  + VI+    NVY I+    LV++    K L+E+LA E
Sbjct:   23 ATLPANLSLAPEKPKPEPRFVTRDPVVFD----------ANGN-VQAKVLSFVDGSEVSTLSLNRSVFGAPLRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKMAEGKLAIVKDL---EIESEKTKAAKQLLESKGWD-DALFVDGSEAPKNFVLATRNLPRVDVIRDHQVNVYSILHKDILVISEKTAKYLEERLAVE 264
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: G4YPP9_PHYSP (Uncharacterized protein n=5 Tax=Peronosporaceae TaxID=4777 RepID=G4YPP9_PHYSP)

HSP 1 Score: 176 bits (445), Expect = 1.790e-46
Identity = 117/267 (43.82%), Postives = 155/267 (58.05%), Query Frame = 1 
Query:  139 PPAHLQQRWSSQAPAGIGQDGL-EDAPLPPNLKLADPAVMEQHLPPXXXXXSDGNDMEVWVTSLHDGSQ-LEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKKFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKL 933
            P A L +  S+QA A      L E+ P+PP   +  PA  E  + P         D+E+ + SL + SQ L  + +D EVFG P R D++  VV+WQ A  R G  KTKT SEVSGS  K   QKGSG AR G  R P WR G + HGP LRD+S+ L KK R +GL+VALS +LREGKL+VVD L   + +  KT  + + L GRGWD+ AL +GGE ++  F  A  NI  +  +     NVY I++   L++T   VK L+E+L
Sbjct:   21 PRASLVRAASTQAAAMPANLSLAEEKPMPPPRVI--PAAQEVKVTP-------SGDLELQLLSLAEDSQELGTVTMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGSTRKPWKQKGSGRARVGDIRAPQWRGGYRVHGPVLRDFSYNLPKKVRAMGLRVALSTKLREGKLAVVDSL---DVDVTKTKDMKKLLGGRGWDH-ALFVGGEEVESSFVLATRNIPYVDTLPQNKINVYSILQKDLLIITKDAVKYLEERL 274
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BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Match: A0A6A5A5U2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A5U2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 8.900e-46
Identity = 115/262 (43.89%), Postives = 149/262 (56.87%), Query Frame = 1 
Query:  211 APLPPNLKLA-DPAVMEQHLPPXXXXXSDGN-DMEVWVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKTISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNKK-------FRLLGLKVALSARLREGKLSVVDDLRCPEG---------EEGKTGPLARTLKGRGWDYSALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGVKRLQEKLARE 942
            A LP NL LA +  V E  +        D N +++  V S  DGS ++ L L R VFG P+R+D++H VVKWQ AN R GN KTKT SEVSGS  K   QKGSG AR G+ RPP WR G +AHGP +RD S+ L KK        R +GL+VALS +L EGKL++V DL                 KT  + + L  +GWD+ AL + GE    +F  A  N+  + +I+ Q  NVY I+    LVL+   VK L+E+LA E
Sbjct:   28 ATLPANLHLAPEKPVRELRVVTREPVVFDSNGNIQAKVLSFTDGSVIDTLTLSRNVFGSPVRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKGKFSESKLRAMGLRVALSTKLAEGKLAIVRDLNAEVYIYIHITIVVHTEKTKSMKQLLATKGWDH-ALFVDGEEAVRNFVLATRNLPTVDIIRQQNINVYAILHKDVLVLSEKTVKYLEERLAVE 288
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD33_ECTSI5.330e-6457.0850S ribosomal protein L4P n=1 Tax=Ectocarpus silic... [more]
A0A6H5KTL0_9PHAE7.050e-6356.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAZ5_9STRA1.230e-5644.74Ribosomal protein L4 domain-containing protein n=1... [more]
A0A6G0XNJ9_9STRA1.180e-5243.22Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UTI0_9STRA5.300e-5151.2050S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID... [more]
A0A485KYQ5_9STRA1.820e-5046.31Aste57867_13666 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZG37_9STRA3.380e-4945.1250S ribosomal protein L4 n=3 Tax=Saprolegniaceae T... [more]
A0A1V9ZKR4_9STRA3.430e-4844.3650S ribosomal protein L4 n=1 Tax=Thraustotheca cla... [more]
G4YPP9_PHYSP1.790e-4643.82Uncharacterized protein n=5 Tax=Peronosporaceae Ta... [more]
A0A6A5A5U2_9STRA8.900e-4643.89Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:619296..624115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue3.9e-56
Seed eggNOG ortholog2880.D8LD33
Preferred nameyml6
KEGG koko:K02926
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022626,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0088@1,KOG1624@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorymitochondrion
Ec32 ortholog description50S ribosomal protein L4
Ec32 orthologEc-11_000280.1
Exons5
Model size2065
Cds size936
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.8073254-UTR-S-ischiensis_contig83:619295..6204121622817331.8073254-UTR-S-ischiensis_contig83:619295..620412Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 619296..620412 -
1695741033.401424-UTR-S-ischiensis_contig83:619295..6204121695741033.401424-UTR-S-ischiensis_contig83:619295..620412Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 619296..620412 -
1622817331.8740613-UTR-S-ischiensis_contig83:624103..6241151622817331.8740613-UTR-S-ischiensis_contig83:624103..624115Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 624104..624115 -
1695741033.4785714-UTR-S-ischiensis_contig83:624103..6241151695741033.4785714-UTR-S-ischiensis_contig83:624103..624115Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 624104..624115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.818485-CDS-S-ischiensis_contig83:620412..6205081622817331.818485-CDS-S-ischiensis_contig83:620412..620508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 620413..620508 -
1695741033.4156332-CDS-S-ischiensis_contig83:620412..6205081695741033.4156332-CDS-S-ischiensis_contig83:620412..620508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 620413..620508 -
1622817331.830255-CDS-S-ischiensis_contig83:621308..6215241622817331.830255-CDS-S-ischiensis_contig83:621308..621524Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 621309..621524 -
1695741033.427392-CDS-S-ischiensis_contig83:621308..6215241695741033.427392-CDS-S-ischiensis_contig83:621308..621524Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 621309..621524 -
1622817331.8416348-CDS-S-ischiensis_contig83:622235..6224001622817331.8416348-CDS-S-ischiensis_contig83:622235..622400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 622236..622400 -
1695741033.4383447-CDS-S-ischiensis_contig83:622235..6224001695741033.4383447-CDS-S-ischiensis_contig83:622235..622400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 622236..622400 -
1622817331.8523011-CDS-S-ischiensis_contig83:623102..6232721622817331.8523011-CDS-S-ischiensis_contig83:623102..623272Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 623103..623272 -
1695741033.452181-CDS-S-ischiensis_contig83:623102..6232721695741033.452181-CDS-S-ischiensis_contig83:623102..623272Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 623103..623272 -
1622817331.863098-CDS-S-ischiensis_contig83:623814..6241031622817331.863098-CDS-S-ischiensis_contig83:623814..624103Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 623815..624103 -
1695741033.4648683-CDS-S-ischiensis_contig83:623814..6241031695741033.4648683-CDS-S-ischiensis_contig83:623814..624103Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 623815..624103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20034.1prot_S-ischiensis_contig83.20034.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 620413..624103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20034.1

>prot_S-ischiensis_contig83.20034.1 ID=prot_S-ischiensis_contig83.20034.1|Name=mRNA_S-ischiensis_contig83.20034.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=312bp
MLSRLRSAACGAALRAGQASGTGLGNTTRCQACAGPFSRLWRPPAHLQQR
WSSQAPAGIGQDGLEDAPLPPNLKLADPAVMEQHLPPPPPPPSDGNDMEV
WVTSLHDGSQLEKLVLDREVFGVPMRRDVVHEVVKWQRANWRKGNAKTKT
ISEVSGSGAKVRPQKGSGMARAGHRRPPHWRKGAKAHGPKLRDWSFKLNK
KFRLLGLKVALSARLREGKLSVVDDLRCPEGEEGKTGPLARTLKGRGWDY
SALLIGGENLDEDFGQAAANIRGIKVIKAQGANVYDIVKNRQLVLTAAGV
KRLQEKLAREP*
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mRNA from alignment at S-ischiensis_contig83:619296..624115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20034.1 ID=mRNA_S-ischiensis_contig83.20034.1|Name=mRNA_S-ischiensis_contig83.20034.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4820bp|location=Sequence derived from alignment at S-ischiensis_contig83:619296..624115- (Schizocladia ischiensis KU_0333)
GGAGGACTAAGCATGTTGAGCAGGCTACGAAGCGCGGCATGTGGGGCGGC
CCTGAGGGCTGGCCAAGCATCTGGGACCGGGCTTGGCAACACCACACGGT
GTCAAGCATGTGCGGGGCCGTTCAGCCGTCTTTGGCGACCGCCAGCGCAC
CTGCAGCAGCGTTGGTCCTCGCAGGCACCGGCTGGCATTGGACAGGACGG
TCTGGAGGACGCCCCACTTCCCCCAAACCTTAAACTGGCAGACCCGGCGG
TCATGGAGCAGCACTTACCCCCGCCGCCGCCACCACCATCGGATGGGAAC
GGTGAGGCCAAGACATTCCGTAGCGCGGGTGGGGATGACATATCAGAGAA
GCTGGTCCGTGCAGAGCGCACAGCGACGTGTATGATTACCCTAAAGGGTT
GTTCTACGCCCCTTAATTAAATGGTTTGGCCCTCGGGCCACACACGTGCT
CTCCATCTGCTGCGTAGCGCTCTGGGCCACCTAGTTACTACAGTGGTACA
AGTCATGAGACTGTCAAATGTTTTACCTGCTTCATGTTTATTGCAATGTA
AACCGTCCTGAAACATGCGGCACGAATAGAATGTGCTGCATATAGAACGT
TCGCCTTCACCACCCCCGCGTCGGCACGTTTGACTTGCAACAATCCCGGC
CTAATTGGGATGCGAGTGTCCATGGCTAAAATAGCTACTCCTGTCGGAGG
GCAAACCCAAAGTTTCGACTTAAGGGCTGTCAGCATTGCACGCAAGGTTC
TGTCGCAAGACAAGCTAACGAGTACATATATATAACCACGTGAGTACATA
TAATCACATCTGTTCCCTGCCGCCGTATTCCGCTTCTTTTCAGATATGGA
GGTCTGGGTGACGTCGCTGCACGATGGTTCCCAGCTTGAAAAGCTCGTGT
TGGACCGTGAGGTGTTCGGTGTCCCCATGCGGAGAGACGTGGTGCACGAG
GTAGTGAAGTGGCAGCGAGCTAATTGGCGGAAGGGGAATGCGAAGACCAA
GACCATTTCCGAGGCAAGTTTGAGTTGTACAGACCCCCCCTCGGCCAGCA
CGCTGCCACGGTGTAGCTTGATCTGTCGTTGTTTACTATTCCTTGTCGGT
CCAATGCTAGCATTGTTCCTCTTGGTCCAATGCTAGCATTAATTGCTCCA
CCGATCTAGGGCCCTATTCTGGATTTTCGCTTGTTTCCTGCGTAGAATTC
GTCCACATGCGAACGTGCCACACTATGAAGCCCACTAATACTGTAGGTAC
ACTACCAGTACGTACTGTCCTGTCCATTGCCAAAACAACTGTTGGGAAGA
GAAATGGCTACATAACGCTCGAACCTAGCAAAAACAAAGGGACGGGGAAA
TGAGTCGGTAAAAACAACCCGCGAGACCCGGAAAGAGCTCCAGTTGTAAA
GGCAGTCGTCCATCCAATCCGACAACAGCTTTAGCAACCGGTGAGTGTTG
CCACGACACTTGATTGTCCGGCTGTTCCCGCAGGTAGCCATGGTACAAAA
TTGCGATCGCTGTTTTTGGTGCCCGGGCCACCCTATGAAGGACGCATCGG
ATGACCGTGAAATTTTGACACACGAAAGAGCTCGATGAGTACGTTCATTT
GCGCTATAGCTTTCGTAGCACAACAACACATGGACCGAGCAACAGGTCAA
TCAATATCCGAAAAAAAACTGCTTGGGCAAAATCAGTCGCACTTTTGTGC
CACGGTTACCCGCAGGTGAGCGGCTCTGGGGCCAAGGTGCGGCCGCAGAA
GGGCTCGGGGATGGCACGAGCCGGGCACCGACGACCCCCCCACTGGCGCA
AGGGGGCCAAGGCCCACGGGCCCAAGCTGCGGGACTGGTCCTTCAAACTC
AACAAGAAGTTCCGACTGCTGGGGCTCAAGGTGAGCGAGGAGGCAGGAGG
GGGCAGAATGAAGGGAGCCAGAGGGGGATGGCATATTTGATACTGAGTAT
GCTCCGTCTCGATCGAGGCGTGTGGTCAATGGTCGGGACTAAGGCATGCA
CAACGTGAGTACATACTACGTAGTATATGTGTGTGTGTATGTGTTCGTGC
TAACGCTGTGGCTGTCGGAGTCCCGAGTTCGTTGACAGATACACCCGCCG
CGTCCGAGACGGGAGCAGACCCGATGCTTCCATGAGAGGTTTGTAACGAC
ATATCGAAGCAACTTCAGCTTGAGCTTTGAATAAACCGTAGTACGTACTT
GGGCTTACGAGCTGGTCCGGTCAAAAAAAGAACAAGTTCTTTCCGCGGAA
AGTTCTTGCTCGAGTCTTGCAAGTTGGCCAATGAAAATTTTGGGACGGAA
GTGACCGTGACGGAGAATCGTATTGTGGGACCCTTTTTGTTTTTCATTTT
GTCGATCAGTATCGAAGATTTCCGCATATTGAAGATCCTTCAGGGCAGGA
TATGTCGCCAGCAAAAAAAAAAGAGCCGAAGGTCCCTCAAAAATTGGTGG
CACTTTCCGCCATGCCGATGAAACTGAGACTCGAGTACTGTTGTTTTGGA
ATCTGTGGTGCCCCAAGGGAAAGAATCCTCCCTCTCACAAAAAAACGCCC
AGATTCCACCCCCTCCCCTCCCCCCCCGCCCCACTCTGCAGGTGGCGCTT
TCTGCCAGGCTACGGGAAGGGAAACTGTCGGTGGTTGATGACCTGAGGTG
TCCCGAGGGGGAGGAGGGAAAGACCGGGCCGCTTGCCCGCACTCTGAAGG
GGCGCGGCTGGGACTACTCGGCGCTGCTGATTGGCGGGGAGAATCTGGAC
GAGGATTTTGGCCAGGCGGCGGCAAACATCCGCGGGATCAAGGTCATCAA
GGCACAGGTGCGTGCGTGGGGGGGCTTGTACAGTAGAGAGAGATTGATGT
ATCCTCGTACGAGTACTCGTACTACGTAGTATGTACTATAGTATTGTCAG
GAACAACACAGGGCGAGGTGCTGGCCACGCCACTGAAGACCTCAGCAGGG
TCCCTTCCTTATAGCTCGCCAGGGGAGATTTGTGTGGGGAAGGGGAGAAG
AGGAGGAGGGGGATGTGGACGGGGAGGAGGATGTATTGCTGGAAAGTATA
TGTATTGCCTACTCTTTCGCAGGTGAGGTGCGTGGTCAATGGTCTCTGGA
CTACGGCAAGCGCAACGTGAGTACGCACACATACATACTACAATATATAC
ATGTACTACCCCCCTCCCACCCTGGCTCTGCCGGGGCAGGGATGGGGCCT
GCTTCCCCCTCGGTCCAGACCCGTAGTCGGTGGTCCCTCCTCGATACACA
CGAGTATGTGTGCCAGGACATGTGTGTGCCTGCCCCTGGACTTGCAGTGC
CGTAATAGTCGGAGAGATTTTTCCCCCTCGGGCCAATTCTCGGGGGAATA
TTTCTGGCGGGAAAGTCCTGAATTTGTCCCGAAAACTCTCAGAACAGTTC
CCCCGGATCCTGAGGGAGATCATCTGAGTTTCCTGCGCGAATCCGACCAG
TATTCAGCGAGAAAAGTTCTCCCGAAAATTGGCATGGGGGGGCAAGATCT
CTCCGACGATTACGGTAAGCGCTCCACCCTGCCTCACAGACTGTCCCCCG
GCCGTCCCCCCTTCACGCACGCACGCACGCGTGCTCGTGCCGTGCCCCCC
CTTGCAGGGAGCCAACGTGTACGACATTGTCAAGAACCGGCAGCTAGTGC
TCACTGCCGCTGGCGTCAAGCGGCTGCAGGAGAAGCTTGCCAGGGAGCCG
TAAGTTACTTCGAAGTAGGTTGGAGAGTACTTCCAAGTACCAAGGAGGTA
TGTAGGCACGTGCTCACATTGTGCTATTTAGCCATGGGATGGACATCGCC
CGCATGGCATCTTCCGAGATGGGGGCAATTTGAGTCACACTGCAGTTACC
GTAGCTTTAGCGACTGCTCCCAGACCCCCGTGGAGTTAACAGCTCAGTCA
CCAGAGTGGAGGTTATAACTAAGTAATTCTCGTACAATTACAAACCACTC
CTGTCCCTCGCAAGTCTCCTCAAGTCGATCGCGCTGCACAAAGGTGCAAC
ACACGTCGTGGCGGACCATGAGGGTCAGGCATAGCACAATGGAGCGCCAC
CAGTGCAAGGTGCTGGTGGAGCTGTAGGTGCTAGTGCGCAACAATTCCAA
GAATTTTGATGAGGTACTGCGGGAAGTACTTCGTACAACATACGCTCACC
TGTACAGAGATTCCGGGAATCACGGGCATCGGGCGATGCCAGGCCCGACA
GACCGAGGGTGCGCCCGGCCTGAGAGTGAGCGAGCGTGCCGCACATACTG
TACTTCCAAGTACTTCGTAAGAGAACTGCTACGAAGTACTATATGAAGTG
CTTTTTTGTTGAAGCCTCACTCGGCCTAACAGGTGGCATCAAGTCCTGCA
CGCAGTGCCGGCGGGGCCCGCCGCGGGCCCGGACTGTGATGCGCCGGCAG
ACTGGAATTGATGCTCCCAGGCTGCAAGTGCGTTCAGGATCGATTTGGGC
ATGCTGGCCCTACCTCGAAGTATTTTGAAAGGATTCCTTTGAGTGAAACT
CTTCTATGCTGAAGTATGCACTCACAGAACTCAGCGGGCTTTGGGTGCGT
GGGGTTAGGTAGGGAGGCCTGCTGGAGACAGTTGCTGTAGGACCTCTCGG
GTGGTGTACGGCAGTTGCCAGGCTGATTGACAATCCTTGATTGGCACTTA
GTTTTTGGGAGGAAGATGGGCAAGCGAGTGGGAAAGAAGAGGTGAACCAA
GCGCCACAATTTTAGACTCTACACGTGCAAAGTGACTACCGTTACGCAAG
TTAAAGCTCTATTCGTCATTTTTCCTGGTGTGGCCACACCATTGTGCTGT
TAACATGGGTTCTCTGCTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:619296..624115-

>mRNA_S-ischiensis_contig83.20034.1 ID=mRNA_S-ischiensis_contig83.20034.1|Name=mRNA_S-ischiensis_contig83.20034.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1872bp|location=Sequence derived from alignment at S-ischiensis_contig83:619296..624115- (Schizocladia ischiensis KU_0333)
ATGTTGAGCAGGCTACGAAGCGCGGCATGTGGGGCGGCCCTGAGGGCTGG
CCAAGCATCTGGGACCGGGCTTGGCAACACCACACGGTGTCAAGCATGTG
CGGGGCCGTTCAGCCGTCTTTGGCGACCGCCAGCGCACCTGCAGCAGCGT
TGGTCCTCGCAGGCACCGGCTGGCATTGGACAGGACGGTCTGGAGGACGC
CCCACTTCCCCCAAACCTTAAACTGGCAGACCCGGCGGTCATGGAGCAGC
ACTTACCCCCGCCGCCGCCACCACCATCGGATGGGAACGATGTTGAGCAG
GCTACGAAGCGCGGCATGTGGGGCGGCCCTGAGGGCTGGCCAAGCATCTG
GGACCGGGCTTGGCAACACCACACGGTGTCAAGCATGTGCGGGGCCGTTC
AGCCGTCTTTGGCGACCGCCAGCGCACCTGCAGCAGCGTTGGTCCTCGCA
GGCACCGGCTGGCATTGGACAGGACGGTCTGGAGGACGCCCCACTTCCCC
CAAACCTTAAACTGGCAGACCCGGCGGTCATGGAGCAGCACTTACCCCCG
CCGCCGCCACCACCATCGGATGGGAACGATATGGAGGTCTGGGTGACGTC
GCTGCACGATGGTTCCCAGCTTGAAAAGCTCGTGTTGGACCGTGAGGTGT
TCGGTGTCCCCATGCGGAGAGACGTGGTGCACGAGGTAGTGAAGTGGCAG
CGAGCTAATTGGCGGAAGGGGAATGCGAAGACCAAGACCATTTCCGAGAT
ATGGAGGTCTGGGTGACGTCGCTGCACGATGGTTCCCAGCTTGAAAAGCT
CGTGTTGGACCGTGAGGTGTTCGGTGTCCCCATGCGGAGAGACGTGGTGC
ACGAGGTAGTGAAGTGGCAGCGAGCTAATTGGCGGAAGGGGAATGCGAAG
ACCAAGACCATTTCCGAGGTGAGCGGCTCTGGGGCCAAGGTGCGGCCGCA
GAAGGGCTCGGGGATGGCACGAGCCGGGCACCGACGACCCCCCCACTGGC
GCAAGGGGGCCAAGGCCCACGGGCCCAAGCTGCGGGACTGGTCCTTCAAA
CTCAACAAGAAGTTCCGACTGCTGGGGCTCAAGGTGAGCGGCTCTGGGGC
CAAGGTGCGGCCGCAGAAGGGCTCGGGGATGGCACGAGCCGGGCACCGAC
GACCCCCCCACTGGCGCAAGGGGGCCAAGGCCCACGGGCCCAAGCTGCGG
GACTGGTCCTTCAAACTCAACAAGAAGTTCCGACTGCTGGGGCTCAAGGT
GGCGCTTTCTGCCAGGCTACGGGAAGGGAAACTGTCGGTGGTTGATGACC
TGAGGTGTCCCGAGGGGGAGGAGGGAAAGACCGGGCCGCTTGCCCGCACT
CTGAAGGGGCGCGGCTGGGACTACTCGGCGCTGCTGATTGGCGGGGAGAA
TCTGGACGAGGATTTTGGCCAGGCGGCGGCAAACATCCGCGGGATCAAGG
TCATCAAGGCACAGGTGGCGCTTTCTGCCAGGCTACGGGAAGGGAAACTG
TCGGTGGTTGATGACCTGAGGTGTCCCGAGGGGGAGGAGGGAAAGACCGG
GCCGCTTGCCCGCACTCTGAAGGGGCGCGGCTGGGACTACTCGGCGCTGC
TGATTGGCGGGGAGAATCTGGACGAGGATTTTGGCCAGGCGGCGGCAAAC
ATCCGCGGGATCAAGGTCATCAAGGCACAGGGAGCCAACGTGTACGACAT
TGTCAAGAACCGGCAGCTAGTGCTCACTGCCGCTGGCGTCAAGCGGCTGC
AGGAGAAGCTTGCCAGGGAGCCGTAAGGAGCCAACGTGTACGACATTGTC
AAGAACCGGCAGCTAGTGCTCACTGCCGCTGGCGTCAAGCGGCTGCAGGA
GAAGCTTGCCAGGGAGCCGTAA
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