mRNA_S-ischiensis_contig83.20028.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20028.1
Unique NamemRNA_S-ischiensis_contig83.20028.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: D8LBJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.880e-22
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:   47 MGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREGG 277
            MGI  + VGGA G   KG VN + KV +RR PWEY++  G GA+VG+K PQWEA L+ DINEMRADRNMPP  R GG
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGG 77
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: A0A7S3Y6B8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6B8_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 6.070e-18
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2 
Query:   26 FAAKVPAMGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREGGMTTWTPMALKTE 313
            F+  +  MG+  +A G ALG G+K + N + KV +RREPWEYL+LGG G + G K+P W+  +++ IN + A+R +PPL+  G ++   P   K E
Sbjct:   14 FSIYIENMGVFSVAFGTALGIGVKAYSNCLRKVALRREPWEYLVLGGLGMYAGSKYPAWQEDMVKKINVLHAERGLPPLDSVGQISITDPARRKGE 109
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: A0A835ZFJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.400e-17
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   47 MGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREGGMT 283
            MG+L    GGA G GLK + N+V KVP+RR+PWEY++   AGA +  + P WE  L E +N  RA RN+PP+NREG  T
Sbjct:    1 MGLLYTLGGGAAGLGLKWWTNSVRKVPLRRDPWEYVLYAAAGAALFRQIPIWEKNLTEQVNTKRAARNLPPINREGATT 79
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: A0A7S2V622_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.100e-16
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:   83 GAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREG 274
            G  LK   N+V KVP+RREPWEYL+ G  GA+VG+K P+W+  L+++INEM  +R +PPL+ +G
Sbjct:   18 GVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDG 81
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: A0A6H5JVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.180e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:  140 PWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREGG 277
            PWEY++  G GA++G+K PQWEA L+ DINEMRADRNMPP  R GG
Sbjct:  591 PWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGG 636
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: A0A6V1ZZJ3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V1ZZJ3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.020e-9
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:   47 MGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREG 274
            MG++   VGG LG  ++   N V K+P  R+PW ++     GA+  HK+ Q E +L+++INE+R+D+ MPP+   G
Sbjct:   18 MGLVATLVGGTLGTSVQLVTNGVMKIPYSRKPWLHVTYFFLGAYGAHKYLQVEQRLVDEINEIRSDKGMPPMIGSG 93
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: A0A7R9ZF43_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF43_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.790e-9
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 2 
Query:   47 MGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPLNREGGMTTWTP 295
            MG+  + VGG  G  +    NA  KVP+ R PW ++     G + G K+   EA+LL DINE+RAD+ +PP+    G   + P
Sbjct:   28 MGLTAMLVGGVSGTSMHLLANAARKVPLSRSPWFHVAYFFVGMYAGQKYVTVEAKLLNDINELRADKGLPPMVGTPGYFRYGP 110
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BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Match: K0R0Q8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Q8_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 5.020e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:   47 MGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWPQWEAQLLEDINEMRADRNMPPL 262
            MG+    VG   G G+    NA+ KVP+ R PW ++     G +VG +W + E +L+ DINE+RAD+ MPP+
Sbjct:  136 MGLTAFFVGAFSGTGMHMMSNAIQKVPLSRRPWMHVGCFFLGGYVGQRWVRLEKELVLDINEIRADKGMPPM 207
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LBJ4_ECTSI2.880e-2262.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y6B8_HETAK6.070e-1841.67Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A835ZFJ2_9STRA3.400e-1751.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V622_9STRA2.100e-1653.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JVS4_9PHAE1.180e-1067.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1ZZJ3_9STRA5.020e-939.47Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9ZF43_9STRA7.790e-938.55Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K0R0Q8_THAOC5.020e-841.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:572334..573677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog38833.XP_003057224.1
EggNOG OGs2CV33@1,2S4FE@2759,37W0Y@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003750.1
Exons2
Model size1109
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20028.1prot_S-ischiensis_contig83.20028.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 572380..572890 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.4052482-UTR-S-ischiensis_contig83:572333..5723791622817331.4052482-UTR-S-ischiensis_contig83:572333..572379Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 572334..572379 +
1695741033.02039-UTR-S-ischiensis_contig83:572333..5723791695741033.02039-UTR-S-ischiensis_contig83:572333..572379Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 572334..572379 +
1622817331.4384544-UTR-S-ischiensis_contig83:572890..5736771622817331.4384544-UTR-S-ischiensis_contig83:572890..573677Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 572891..573677 +
1695741033.0717623-UTR-S-ischiensis_contig83:572890..5736771695741033.0717623-UTR-S-ischiensis_contig83:572890..573677Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 572891..573677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.41637-CDS-S-ischiensis_contig83:572379..5724701622817331.41637-CDS-S-ischiensis_contig83:572379..572470Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 572380..572470 +
1695741033.032462-CDS-S-ischiensis_contig83:572379..5724701695741033.032462-CDS-S-ischiensis_contig83:572379..572470Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 572380..572470 +
1622817331.4273262-CDS-S-ischiensis_contig83:572705..5728901622817331.4273262-CDS-S-ischiensis_contig83:572705..572890Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 572706..572890 +
1695741033.0560286-CDS-S-ischiensis_contig83:572705..5728901695741033.0560286-CDS-S-ischiensis_contig83:572705..572890Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 572706..572890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20028.1

>prot_S-ischiensis_contig83.20028.1 ID=prot_S-ischiensis_contig83.20028.1|Name=mRNA_S-ischiensis_contig83.20028.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=92bp
MGILGIAVGGALGAGLKGFVNAVTKVPMRREPWEYLILGGAGAWVGHKWP
QWEAQLLEDINEMRADRNMPPLNREGGMTTWTPMALKTEES*
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mRNA from alignment at S-ischiensis_contig83:572334..573677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20028.1 ID=mRNA_S-ischiensis_contig83.20028.1|Name=mRNA_S-ischiensis_contig83.20028.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1344bp|location=Sequence derived from alignment at S-ischiensis_contig83:572334..573677+ (Schizocladia ischiensis KU_0333)
CGCAAGTCGCAGGGAGGGAGCAGCCTTTGCGGCTAAGGTACCGGCTATGG
GCATATTGGGGATCGCGGTGGGCGGAGCGTTAGGGGCGGGGCTCAAGGGA
TTCGTCAATGCCGTGACAAAGGTCCCCATGCGACGGGGTGAGTGACGCGA
ACGCGCGTGCCTTGTTCGATGCTGGGCTTTCTTTCCTCGCCAGAGCCTCT
CGCGCGGAACGTCGTGTGCAGCAAATATGGCCACGGCCGGCCTTGATATT
AGTTGACCTCATGGAACTGTTTCTGTCTTTGCCACCAGGGCCCTCGTTGT
CGATCGTGAACGTTCCTACTTTCCTTTTACAACTGCAATGCCATTGGCCT
GCCGGTCTTTGTGCCTTCGCAGAGCCGTGGGAGTACTTGATCCTGGGAGG
GGCCGGGGCGTGGGTGGGTCACAAGTGGCCGCAGTGGGAGGCACAGCTAT
TGGAAGACATCAACGAGATGCGGGCAGACCGGAATATGCCCCCCCTCAAC
CGTGAGGGAGGCATGACCACCTGGACGCCCATGGCGCTTAAGACGGAGGA
GAGCTGAGGCAAAACACGCCAGGGACGGCGTTTTCTCTTGAGGCTGCTGC
TTCTCCTGCTGCCGCTGATGGTGGGAGCCGGTGTTGAGTGGGAGGGGGGC
ATGGGCGAGGTGAACGTGCTGCCCGATGGCCAAGTCCGGGTGCTCCCCGG
GAGAAACGATCCCGCGGGGGCGCCAATGATGCAACTGAGGGCGCACCCCC
CCCGAACGACAGTGGCGTTGGCCGCTGTTTTATTTTGTCGACGGTGAGCA
GATACATAGGTTCTGTGATAGGATTGGACCTGCGAGCAGGGCCAATATCC
AAGCTCTGCCCGCCCAGCGAACACGGCCCATGATTCCTCCCCCTTGGCGG
CAGCAGCATTGGCACATGCTACCCAAGGGCGAGCAGCAGCCAGCTGGTAG
ACGCCATCCATATTGGCAGTTGGTTGGTTGGTTTGGGGCCGGCATGCGTG
GGCCAGGGTCATCGCGCGTGTGCCGTGCCGGTCTTTGAGCCCCGGCCCTG
GGCAGGACGCGAAGGCACCAGCCTCCGGCGCCTGTTTGTCTAGAGCCTCT
CCACATGTAGTATGCCCACTTTGACGTAGGTCATTAATACACGTACATAA
TGTCATCCTAGTTGTCGGCGGATCGGCCATCTTTTCACAAGGTAGGCCTC
GGCGCCCGCGAAGGCCCGGTCCTAGCTTAGGGCTTGCGTGTGAGCACTGT
GTCCTTGGTGTTCGTGTGCCGCTCGAATTCTGCCTCATTTTTTTCTTGCC
TTCGAGCGTGCTTTGCACCGTTTGAAGCATGCACATGGAAGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:572334..573677+

>mRNA_S-ischiensis_contig83.20028.1 ID=mRNA_S-ischiensis_contig83.20028.1|Name=mRNA_S-ischiensis_contig83.20028.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig83:572334..573677+ (Schizocladia ischiensis KU_0333)
ATGGGCATATTGGGGATCGCGGTGGGCGGAGCGTTAGGGGCGGGGCTCAA
GGGATTCGTCAATGCCGTGACAAAGGTCCCCATGCGACGGGATGGGCATA
TTGGGGATCGCGGTGGGCGGAGCGTTAGGGGCGGGGCTCAAGGGATTCGT
CAATGCCGTGACAAAGGTCCCCATGCGACGGGAGCCGTGGGAGTACTTGA
TCCTGGGAGGGGCCGGGGCGTGGGTGGGTCACAAGTGGCCGCAGTGGGAG
GCACAGCTATTGGAAGACATCAACGAGATGCGGGCAGACCGGAATATGCC
CCCCCTCAACCGTGAGGGAGGCATGACCACCTGGACGCCCATGGCGCTTA
AGACGGAGGAGAGCTGAAGCCGTGGGAGTACTTGATCCTGGGAGGGGCCG
GGGCGTGGGTGGGTCACAAGTGGCCGCAGTGGGAGGCACAGCTATTGGAA
GACATCAACGAGATGCGGGCAGACCGGAATATGCCCCCCCTCAACCGTGA
GGGAGGCATGACCACCTGGACGCCCATGGCGCTTAAGACGGAGGAGAGCT
GA
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