mRNA_S-ischiensis_contig83.20027.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20027.1
Unique NamemRNA_S-ischiensis_contig83.20027.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.150e-18
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 2 
Query:  167 EYTGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKE--APAAAAPADSGGEIPSVDSEAFATWIDGEGNLEKWVASIEK 430
            EYTG+EA++R   PKDEH+VVAI GFY G+YV+ K  SALFSSP+KE  AP  A+ A S  +IP    + F  W++G GN+EK++A+I+K
Sbjct:   37 EYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEKEVAAPVVASSATSS-DIPDGYEDNFWQWLEGAGNMEKYLATIDK 125
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A7S2I9N5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I9N5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.890e-11
Identity = 54/135 (40.00%), Postives = 70/135 (51.85%), Query Frame = 2 
Query:   35 VTHGIMLTAVRAIARAAPVRTALAASPALRGAGAXXXXXXXXXVEYTGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAP---ADSGGEIPSVDSEAFATWIDGEGNLEKWVASIEK 430
            V H +  TAVR  ARAA  +  +  S A                E+TG +A VR V P+D+ L  AIL  Y  + +   +GS +  S   E PA  AP   A S G IPSVDS+ FAT+I+ E NL KW+ + EK
Sbjct:    2 VVHALKSTAVRG-ARAATSKRCMGGSAA-------------PAPEWTGIDAVVRKVLPQDDQLAGAILAGYGVLIMGATIGSKMGGSAPAEEPAPVAPVTPAASTGSIPSVDSDEFATFIESEENLLKWIETAEK 122
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A7S2R1X0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1X0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.480e-9
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 2 
Query:  167 EYTGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAP-ADSGGEIPSVDSEAFATWIDGEGNLEKWVASIEK 430
            E+TG +  VR   P+D  L  AILG Y  +  +  + S L SS ++ AP   AP A   G+IPSV+S  F T+I+ E NL KWV S+EK
Sbjct:   34 EWTGIDKVVRGYFPQDHQLAGAILGGYGVVIALGMLKSKLSSSDEEPAPVVVAPVAAITGDIPSVESAEFDTFIENESNLMKWVDSLEK 122
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A8K1FKH1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH1_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 1.930e-9
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  173 TGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAPA--DSGGEIPSVDSEAFATWIDGEGNLEKWVASIEK*LRPLGN 451
            TGFEAKVRAV P+D  +V+A LG Y+ + ++FK+       P K APA  APA   +   +PS+  + F  W    GN+++W    E+ L  +GN
Sbjct:   36 TGFEAKVRAVLPQDYQIVLATLGIYSSIILLFKL------KPSKAAPAVEAPAATSASSAVPSLFDDEFDQWSKVPGNMQRW----EESLNTIGN 120
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: K3WMV8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMV8_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 3.690e-9
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 2 
Query:  173 TGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAP----AAAAPADSGGEIPSVDSEAFATWIDGEGNLEKWVASIE 427
            TGFEAKVRAV P+D  +V+A LG Y+ + ++FK+       P K+AP    AA A A +   IPS+  + F  W    GN+E+W  S++
Sbjct:   35 TGFEAKVRAVLPQDYQIVLATLGIYSSIILLFKL------KPSKKAPEAIAAAPAAASTSDAIPSLFDDEFDEWSKLPGNVERWEKSLD 117
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A5D6Y319_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y319_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.450e-8
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 2 
Query:  173 TGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAPADSG-----GEIPSVDSEAFATWIDGEGNLEKWVASIE 427
            TGFEAKVRAV P D  +V+A LG YT + ++FK+       P K+A  A AP           IPS+  + F  W    GNLE+W  S++
Sbjct:   35 TGFEAKVRAVLPNDYQIVLATLGIYTTIGLLFKL------KPSKKAVEAPAPXXXXXXXXXSSIPSLFDDEFDAWSQLPGNLERWEKSLD 118
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A0M0JS39_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS39_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 3.970e-6
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 2 
Query:  182 EAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAP---AAAAPADSGG-------EIPSVDSEAFATWIDGEGNLEKWVA 418
            EAK+R + PKDE +VVAILG Y G++ + K+  A+  S KK  P   AAAAPA + G       E P++  E F  W     N +KW A
Sbjct:    2 EAKIRKILPKDEQIVVAILGCYAGVFGLVKLKGAM--SGKKPVPVAAAAAAPATTSGSTSKWGFEPPTI--ETFDAWEQNADNWKKWEA 86
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A0P1B0D1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0D1_PLAHL)

HSP 1 Score: 53.9 bits (128), Expect = 2.060e-5
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 2 
Query:  182 EAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAPAD---SGGEIPSVDSEAFATWIDGEGNLEKWVASIEK*LRPLGN 451
            EAKVR   PKD H+V+A LG YT + ++FK+        KK+      P++   +   IPS+  + F  W    GNL+KW    EK L  LGN
Sbjct:   35 EAKVRHYLPKDYHIVLATLGAYTTLIMLFKL-----KPSKKKEEEIVIPSNLSSTSASIPSLFDDEFDEWSKLPGNLDKW----EKSLETLGN 118
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A3M6VF92_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF92_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.200e-5
Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 2 
Query:  182 EAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAPADSGGE-----IPSVDSEAFATWIDGEGNLEKWVASIEK*LRPLGN 451
            EAKVR   PKD H+V+A LG Y  + ++FK    L  S KK     A P+ S        IPS+  + F  W    GN++KW    EK L  LGN
Sbjct:   35 EAKVRHYLPKDYHIVLATLGAYATIIMLFK----LKPSKKKAEEIVATPSSSNSNSTLTSIPSLFDDEFDEWSKLPGNMDKW----EKSLETLGN 121
[Close]
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Match: A0A7S0LIB6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIB6_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 2.390e-5
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 2 
Query:  167 EYTGFEAKVRAVAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAA---APADSGG-----EIPSVDSEAFATWIDGEGNLEKWVASIEK 430
            E  GF+  VR    KDEH+V+A+LG Y G++ + ++ SA    P   AP AA     A +GG     E+P++++  F TW +   N + W   ++K
Sbjct:    9 EDMGFDDAVRKYLKKDEHVVLAVLGLYGGVFGLVRLKSAFSKKPVPPAPVAAPVAVAATTGGLKWGFELPTIEN--FDTWSESAENWKMWEKFMDK 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE1.150e-1854.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2I9N5_9STRA1.890e-1140.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2R1X0_9STRA1.480e-944.94Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8K1FKH1_PYTOL1.930e-940.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WMV8_GLOUD3.690e-941.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y319_9STRA8.450e-841.11Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0M0JS39_9EUKA3.970e-642.70Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A0P1B0D1_PLAHL2.060e-538.71Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A3M6VF92_9STRA2.200e-540.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7S0LIB6_9EUKA2.390e-534.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:567409..572287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D8LBJ5
EggNOG OGs2CYCG@1,2S3JM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
Exons3
Model size1303
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20027.1prot_S-ischiensis_contig83.20027.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 568279..572238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.3215027-UTR-S-ischiensis_contig83:567408..5682781622817331.3215027-UTR-S-ischiensis_contig83:567408..568278Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 567409..568278 -
1695741032.9645627-UTR-S-ischiensis_contig83:567408..5682781695741032.9645627-UTR-S-ischiensis_contig83:567408..568278Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 567409..568278 -
1622817331.3748784-UTR-S-ischiensis_contig83:572238..5722871622817331.3748784-UTR-S-ischiensis_contig83:572238..572287Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 572239..572287 -
1695741033.00985-UTR-S-ischiensis_contig83:572238..5722871695741033.00985-UTR-S-ischiensis_contig83:572238..572287Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 572239..572287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.3354428-CDS-S-ischiensis_contig83:568278..5683941622817331.3354428-CDS-S-ischiensis_contig83:568278..568394Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 568279..568394 -
1695741032.977709-CDS-S-ischiensis_contig83:568278..5683941695741032.977709-CDS-S-ischiensis_contig83:568278..568394Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 568279..568394 -
1622817331.3505435-CDS-S-ischiensis_contig83:571279..5713761622817331.3505435-CDS-S-ischiensis_contig83:571279..571376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 571280..571376 -
1695741032.9879472-CDS-S-ischiensis_contig83:571279..5713761695741032.9879472-CDS-S-ischiensis_contig83:571279..571376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 571280..571376 -
1622817331.3627448-CDS-S-ischiensis_contig83:572067..5722381622817331.3627448-CDS-S-ischiensis_contig83:572067..572238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 572068..572238 -
1695741032.9981074-CDS-S-ischiensis_contig83:572067..5722381695741032.9981074-CDS-S-ischiensis_contig83:572067..572238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 572068..572238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20027.1

>prot_S-ischiensis_contig83.20027.1 ID=prot_S-ischiensis_contig83.20027.1|Name=mRNA_S-ischiensis_contig83.20027.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MLTAVRAIARAAPVRTALAASPALRGAGARRSMAAGPAVEYTGFEAKVRA
VAPKDEHLVVAILGFYTGMYVVFKMGSALFSSPKKEAPAAAAPADSGGEI
PSVDSEAFATWIDGEGNLEKWVASIEK*
back to top

mRNA from alignment at S-ischiensis_contig83:567409..572287-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20027.1 ID=mRNA_S-ischiensis_contig83.20027.1|Name=mRNA_S-ischiensis_contig83.20027.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4879bp|location=Sequence derived from alignment at S-ischiensis_contig83:567409..572287- (Schizocladia ischiensis KU_0333)
GGGAAGGGCGAGACAAGATCGAGAGCGAGGACCAGTGACACACGGCATCA
TGTTGACTGCCGTGCGGGCAATCGCGCGTGCCGCCCCCGTGCGGACCGCC
CTGGCGGCCTCCCCAGCCCTGAGGGGTGCGGGAGCCCGCCGCAGCATGGC
GGCTGGCCCCGCCGTGGAGTACACAGGGTTCGAGGCCAAGGTCCGCGCCG
TCGCTCCCAAGGATGAACACGTGAGTGGCCGGGGCGTCGAACCTTTCGCA
CATGCTTGAGAAGGACGCTTAGGTGTGAACTGTGCGTGGGTGTGGTGCAC
ACGTACATGTACTGGGCAAGGGAACCGTGCGACGTCGTTCTTTCTCCCCC
ATTAGCTTGGAAGGGTGCGCCTTGCTCGAAGGCGTTGTCTTGGTCCGTTT
CTCTACCCACAAGAAGCTATTCGTTCTCGCCATTCCTGTGCTCGACAGGC
ATCTGCAGCCTGATGCGCTATGTCTGTGCAACTGCCTGCCTAGTCAATTA
GGTCTCGCATGTTGCCTGACCTCGGTCCGGTGTCCTCCCATTCCGCGCCC
GGCCCTGGGCCGTACTCCCTGGAGGCCAAGGTGCTGCAGGGCTTCTGCCG
CCTTTGCTCCTTCCCTGTGTGCGCGTGATGGGCGTGCACGTGACAAAACG
ACGGCGCGGCCTCGCCCTGATCCTGTGTATGTGTGCCTGCATCACACAAC
AAGATGCGAGAAACTGAATGCATGCGCATTCGTTTGTGACCTGTGTGTCC
TTATGTGCGTCATTTTTTTTTTCACGTACGTTTTGCTGCTGTACGAGAAG
CCGTGCCCCTACCAGCCCCCTGTGCTGAAGCCAACAACCGTGTGGGTGTG
TTTCTGTCGTGTGCTGCACTGGGCCCTTGGCACGCTTTCTTTCTTCTCGT
CGTCTCGGCAGCTCGTTGTGGCCATCTTGGGCTTCTACACCGGCATGTAC
GTGGTCTTCAAGATGGGCTCTGCGCTCTTCTCCTCCCCGAAGAAGGAGGC
GCCTGCCGGTGAGTCTTGTTCACCAAGCCGTATTTGCTAAGTTAGGGTTG
TGAACTGGTGCCGCTTTTTACCGGTCGGTACCAGTTAACTGGCTTAACCG
GTTAACCGACTGGTGGCCTACCGGTTTTGTCCAGTGTTTTTCTCCTTTAC
AATCATGCACAGCTGGACTTTCGATATAGCCGCTGAGCCCTGGACTGGCC
GGTAAACTGTTAACGGCTTCTTAGTATAGAACTGGCAACAACCGGCGGCA
ACTGGTTCAGTACCAGTTAGCGGGTGCCAACAACTTAACTGGTTAATCCG
GCCGAACCGAACTGGTTACAAAGCCAGTTTCCAGTTTTAACTGGTACGGG
CTACCAGTTCACAACCCTGTATTACTGCTTCCGGTAGTGCTGTGAAGTGG
CAAGGCCGGTCGATTGCAATGGCACCCGGGATCACAGCCGCTTCGGTTGG
GCCGTTATTGTTTAACGGCAAGCTGTTGCTCGACAACGGCTATATTTCGG
CCAAAACCGGTGAAAACGGTAGCATGTCGCCGTCCTTGGCTCTGTCGAAC
GCCGAGCTATGGACGATTGCCAAGGGGAAAAAAACGGAGAAACCGGGCAA
GGCTTCGGCCGGTTTAACCAGTCGGCTGGTTAACCGAAACCGACCAGCAA
AGCCAGCTCCGATTCACAGCTCTAGCTTCCGGAGGTATCCAGAGGTATTC
ATCTGAAATTTTTCAAAGTACTTTCGAATGTTCTATACTACTTCCTCCGG
ACCGCTTTATTATACACAGTTTATTGGGTGGCCCTGCGCGCTGCATATAC
TGCGTGCCAAGGCATGCCGTTGGCATGTGCAAATGTCATGCCCACCCCCT
ACCTCGAAGTACCACCTTTAAAATTTCAGTTGAAACGCTCAAGTGGTCCT
GGAGTTATGGGCCAGTGACTGAACCCCAATTTGGAACCTCCAGGGTGGGG
CCGCGACATGCTTGACAGCGCCGCCGCTGCAGTTGCGACACTCGTTTGTG
GGCTGTGCGAGGAAGATTTTTGCGTGGTTTATTTCTTCAGGGAGCCAATC
AACTCAGGTATCCGTCCGCCAAATTTGGGCACCCACGGACGAACATATCG
TATCACGTGTCGTATCTTTCCCGGGCCGTATCGGGCCGTCCAGGGCCCAA
TCGGGCACACACGCTGTTCTCAGGCTACGGGTTGAAGCAAGCGCAGTCGG
GCGCGATCGATTGCTCTCATCGAGAACAACATTTTGACAATTTTCATCGG
AATCAGAATTGTGGTTCCGATATTATGGGCATAAAACCGGTTCTACCCGA
TTTCACCGTATCGTACATACGTACGTACGTACGAACGTACGTATGATTCT
CCGAAGCGGAAGCTTTTGGGGTGGTGGTCGCAACAGTGCAAGTTGCGGCC
CGATCGGAGAGCTAGAGCTCGAGTTATCGCTCTCTGAAGTTAGCACCTGC
GGTTCATGCACAAATCGGGTCATTTTAGCACATGCTTTTTGGGGGGTGAA
CACAATTCGCCGCACTCAAATGTCATATCTCGAGAACTACTGGGCCAATT
TCGCTATTTGTTTTTAGCTTGGTACTTCAAGAGACTGCTGTCACGATGGT
GTATCGTTCGTTTGGGGAAGACCGTCACAGCAACGTTCACCACACTCTAA
AAAAGCTGTGTATAGTAAAGCGGTCCGGAGGAAGTATGACTTTAGGATTT
TTTTCGAGCACAAGTACGAAGTATGTATTTACAGGAACAGCACAGGGTAA
GGTGCAGGCCACGTCACTAAAGACCTCAACAGTGGCCCTTCCTTAGCTCG
CCAGGGGAGGGGGGGGGGTTGTGGGGAAGGGGAGGGGGGGGAGAAGGAGG
AGGAAGAGGGGGAGGGGGCGGAGGACGGGGAGGAAGAGGAAGGAGAGGAG
GGGAAGGGGGTTCCCCCCGGGGGGGGGGAGGCACAAGAACTTCCGGAAGT
AAGTAGTTTTACGTCACTCACACAAGCTGTTCACACCTAGGTATGAAAAG
GCTGTCCCCGCCCCCCAAACAATGCTCTTGGCCCAAAGCTGCCAGAAATT
GTTGAGGCCGGGGGCAGCACCGTCCCCGCCCACACAAGAGCCGCTTCCGC
TCCCAGAACCGTGCCTCCACGAGAGTGCGCATTGGGCAAGTGAGCCGGCG
ATTCCTTCTGCGGGGGCAGTTGTGGGTTGGTTTTTATTTTGGCCGCCAGC
GATTGGGCCTTGGCCCGGTGCTGCCCTGGCTCGTGCCCAAAGCGTTTGTG
AAGCGCCGGCCTGCACCTCTCAAGGCGGACGAGACGTGTTGTGCCCCTGC
GTCTCCGCCGGTTGGTCTTTGGCGAGTTCGTGAGCGCTCCACGTGACCCC
CCTGGTGGATGGATGGCCCGGGTTGACGGGCCGCGGCGTTTCGGGCGGGT
CCTGTGCTCCCACACAATTTTTTGGGGGTGTTTTGTCTTTGCAGCAGCCC
ATGCAGGTCTGGTGTTTTGGGGCGGGAACCTACACTACTTTTTTGTTGGT
GACTGGAAGTCCAAACTATCGCTTGCGAAGTACTGCTGCGAGCGTTCCTT
CGACGTAAATCAAACGCTACAGTGCTTCCAAGTACGAAGTGCTATTGTAC
TTCCGGACGCACTAGATATGGAGCGGTTACGTGCTAAGTATGTGAGGAGC
GGTTGCTGCTGCTTCCAAGTGCGAGATAGTGCGCAGCACTCTGGCAACTA
CTTCTGCATGTTCCCGGGCAGCCCTCTCAGCCACGAAACCGTCAACCACG
CTCTCTGTTTTCAACTCTTTTCGAGCTCGAAGCGACAGAGAGCAAACGCA
ATATCCCAAACGACTCTGATCGCAAATGCCCCCCCCCCCCCCCCCCCCCC
CGCCCCACACGCCCACCGCTGCCGCCGCCGCCGCCGTCGACAGCCGCCGC
ACCAGCGGACAGCGGCGGGGAGATCCCATCCGTGGATTCGGAGGCATTTG
CGACCTGGATCGACGGCGAGGGCAACCTGGAGAAGTGGGTGGCCTCCATC
GAGAAGTGACTCCGTCCCCTGGGAAACCGAAGAACGATTTGAGTAAAAAG
AAGTAACGGGCGGGCGGGCGGGCCAGCACCTGGGGGCCCTGGCCTTGCTG
CCGCCATGATGGCGGACGGGCAGACGGACACCCCACCTGGGGGCAGTGCC
TCGGGGAAACGGTCGCCTCCGCGCCGGGGTGGGTGAGGGGGGAGAAGGAG
ATGGAAGAGGGGGCGGTGATGGCCCCCCTGGGGGGTTATGTTGTGACGAG
GGGTTCAACACGCTCTCGCCGCTGCATTTCGCTGTTGGGGTGGGAGGCAG
AGGAGGGAGACGCGAACGGTGGAGGCCGTTTCCGCCGCGCAGGGGGGGGG
GCATAGAGGCAGGCAGGCGGCTCTGTGGCGTGCAGCGGACGTCCTTGCTC
GGGCAGGTGTTTTGGGACGCGGATGGTGGGCAGCAGCCCTGCTCTGCCCG
GCCACAGCTGCCCCAAGAGATGTGCTTGCCCGATATATTTGCTGCGGGTA
CCGTAGTAAAGTGAGCACTTTTGCCCAGCTAGTGTACTCGAGTACTTGGA
GTGCACTACGTAGCACCAGTACTGTGCAAGGATTGGCTGCCTCTCCGGAG
CACCTGATCTTCTGCGGTTCGTATCTTTTCTGCTGCAATAATACCAAGTA
CTACTACTTTGGAAGTGTAGCACGGCCTCTCTTTTCTGTTTGAGAACGGG
GCGGAATGGGGAGAGTGCTCCCTCTCGGGGAAGGTGCCCCACAGCAAGCC
CTTCGAATCTCCAGGTGTCAATATGGTGAACACCCCGGAGCCATCCATGC
ATGGCCGGCACGGAATTGTATGCCCACTTTTTAGTCCACCCTGCAGCTTT
TTCTTCCCCGGACCTCGTCATGCCTCCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig83:567409..572287-

>mRNA_S-ischiensis_contig83.20027.1 ID=mRNA_S-ischiensis_contig83.20027.1|Name=mRNA_S-ischiensis_contig83.20027.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig83:567409..572287- (Schizocladia ischiensis KU_0333)
ATGTTGACTGCCGTGCGGGCAATCGCGCGTGCCGCCCCCGTGCGGACCGC
CCTGGCGGCCTCCCCAGCCCTGAGGGGTGCGGGAGCCCGCCGCAGCATGG
CGGCTGGCCCCGCCGTGGAGTACACAGGGTTCGAGGCCAAGGTCCGCGCC
GTCGCTCCCAAGGATGAACACATGTTGACTGCCGTGCGGGCAATCGCGCG
TGCCGCCCCCGTGCGGACCGCCCTGGCGGCCTCCCCAGCCCTGAGGGGTG
CGGGAGCCCGCCGCAGCATGGCGGCTGGCCCCGCCGTGGAGTACACAGGG
TTCGAGGCCAAGGTCCGCGCCGTCGCTCCCAAGGATGAACACCTCGTTGT
GGCCATCTTGGGCTTCTACACCGGCATGTACGTGGTCTTCAAGATGGGCT
CTGCGCTCTTCTCCTCCCCGAAGAAGGAGGCGCCTGCCGCTCGTTGTGGC
CATCTTGGGCTTCTACACCGGCATGTACGTGGTCTTCAAGATGGGCTCTG
CGCTCTTCTCCTCCCCGAAGAAGGAGGCGCCTGCCGCCGCCGCACCAGCG
GACAGCGGCGGGGAGATCCCATCCGTGGATTCGGAGGCATTTGCGACCTG
GATCGACGGCGAGGGCAACCTGGAGAAGTGGGTGGCCTCCATCGAGAAGT
GACCGCCGCACCAGCGGACAGCGGCGGGGAGATCCCATCCGTGGATTCGG
AGGCATTTGCGACCTGGATCGACGGCGAGGGCAACCTGGAGAAGTGGGTG
GCCTCCATCGAGAAGTGA
back to top