mRNA_S-ischiensis_contig83.20023.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20023.1
Unique NamemRNA_S-ischiensis_contig83.20023.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:548903..549564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.8752193-CDS-S-ischiensis_contig83:548902..5490401622817324.8752193-CDS-S-ischiensis_contig83:548902..549040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 548903..549040 +
1695741027.7102184-CDS-S-ischiensis_contig83:548902..5490401695741027.7102184-CDS-S-ischiensis_contig83:548902..549040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 548903..549040 +
1622817324.8866887-CDS-S-ischiensis_contig83:549303..5495641622817324.8866887-CDS-S-ischiensis_contig83:549303..549564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 549304..549564 +
1695741027.725461-CDS-S-ischiensis_contig83:549303..5495641695741027.725461-CDS-S-ischiensis_contig83:549303..549564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 549304..549564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20023.1prot_S-ischiensis_contig83.20023.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 548903..549564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20023.1

>prot_S-ischiensis_contig83.20023.1 ID=prot_S-ischiensis_contig83.20023.1|Name=mRNA_S-ischiensis_contig83.20023.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
GAGTSSGGGGSAAGSKRRRRPAEEEDDDMMDGFLDDSDLVRAYNSKKAAR
RVKTKFSGFFVHSGELETQPVGKGGDGDRRAKGSGGGALDDQVFSSRPGA
GRGGGGGAGGAGRGKGRGRGKAGGAGAGGAGGR
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mRNA from alignment at S-ischiensis_contig83:548903..549564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20023.1 ID=mRNA_S-ischiensis_contig83.20023.1|Name=mRNA_S-ischiensis_contig83.20023.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=662bp|location=Sequence derived from alignment at S-ischiensis_contig83:548903..549564+ (Schizocladia ischiensis KU_0333)
GGCGCTGGCACCTCGAGCGGGGGTGGCGGGTCGGCAGCGGGGTCTAAACG
GCGGCGCCGTCCGGCGGAGGAGGAGGATGACGACATGATGGACGGCTTCT
TGGACGATTCGGATCTGGTGCGGGCCTACAATTCCAAGGTGGGGGAGGCG
TTTTTTTATTTGTTACAAAGGGCCAAGTACTCCAGTACTACTTAGAGTAC
CAGGGTACTTTGAAGTACTTGAAGTACCTCGAAGCAACTTTTAGCGTGCC
CGTAGAGGACACCGCCTACAGATAAGGTGCTACTCGTGCGAGTACAGCTC
GTGGAGCAAGCAGCCTGCACACGCACGTGCAAACACATGTGGACACACAC
GACACGCACGCCTCCGCCGTGTGACGCGGCGAAAAAACGCCCCCCCCGCA
GAAGGCCGCACGGCGTGTCAAGACCAAGTTCTCCGGCTTCTTTGTGCACA
GCGGGGAGCTGGAGACGCAGCCGGTTGGCAAGGGTGGCGACGGCGACAGA
AGAGCAAAGGGCAGCGGCGGCGGCGCTCTTGACGACCAGGTCTTCTCCTC
CCGCCCTGGCGCAGGCCGCGGTGGTGGCGGCGGCGCCGGTGGAGCAGGCA
GGGGCAAAGGCAGGGGAAGAGGGAAGGCTGGCGGGGCTGGCGCTGGAGGA
GCCGGTGGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:548903..549564+

>mRNA_S-ischiensis_contig83.20023.1 ID=mRNA_S-ischiensis_contig83.20023.1|Name=mRNA_S-ischiensis_contig83.20023.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig83:548903..549564+ (Schizocladia ischiensis KU_0333)
GGCGCTGGCACCTCGAGCGGGGGTGGCGGGTCGGCAGCGGGGTCTAAACG
GCGGCGCCGTCCGGCGGAGGAGGAGGATGACGACATGATGGACGGCTTCT
TGGACGATTCGGATCTGGTGCGGGCCTACAATTCCAAGGGCGCTGGCACC
TCGAGCGGGGGTGGCGGGTCGGCAGCGGGGTCTAAACGGCGGCGCCGTCC
GGCGGAGGAGGAGGATGACGACATGATGGACGGCTTCTTGGACGATTCGG
ATCTGGTGCGGGCCTACAATTCCAAGAAGGCCGCACGGCGTGTCAAGACC
AAGTTCTCCGGCTTCTTTGTGCACAGCGGGGAGCTGGAGACGCAGCCGGT
TGGCAAGGGTGGCGACGGCGACAGAAGAGCAAAGGGCAGCGGCGGCGGCG
CTCTTGACGACCAGGTCTTCTCCTCCCGCCCTGGCGCAGGCCGCGGTGGT
GGCGGCGGCGCCGGTGGAGCAGGCAGGGGCAAAGGCAGGGGAAGAGGGAA
GGCTGGCGGGGCTGGCGCTGGAGGAGCCGGTGGCCGGAAGGCCGCACGGC
GTGTCAAGACCAAGTTCTCCGGCTTCTTTGTGCACAGCGGGGAGCTGGAG
ACGCAGCCGGTTGGCAAGGGTGGCGACGGCGACAGAAGAGCAAAGGGCAG
CGGCGGCGGCGCTCTTGACGACCAGGTCTTCTCCTCCCGCCCTGGCGCAG
GCCGCGGTGGTGGCGGCGGCGCCGGTGGAGCAGGCAGGGGCAAAGGCAGG
GGAAGAGGGAAGGCTGGCGGGGCTGGCGCTGGAGGAGCCGGTGGCCGG
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