mRNA_S-ischiensis_contig83.20019.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20019.1
Unique NamemRNA_S-ischiensis_contig83.20019.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:514608..519727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size727
Cds size723
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20019.1prot_S-ischiensis_contig83.20019.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 514610..519727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.7255583-CDS-S-ischiensis_contig83:514609..5146601622817324.7255583-CDS-S-ischiensis_contig83:514609..514660Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 514610..514660 -
1695741027.6326659-CDS-S-ischiensis_contig83:514609..5146601695741027.6326659-CDS-S-ischiensis_contig83:514609..514660Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 514610..514660 -
1622817324.7390425-CDS-S-ischiensis_contig83:516080..5162251622817324.7390425-CDS-S-ischiensis_contig83:516080..516225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 516081..516225 -
1695741027.64201-CDS-S-ischiensis_contig83:516080..5162251695741027.64201-CDS-S-ischiensis_contig83:516080..516225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 516081..516225 -
1622817324.75038-CDS-S-ischiensis_contig83:516830..5169281622817324.75038-CDS-S-ischiensis_contig83:516830..516928Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 516831..516928 -
1695741027.6512973-CDS-S-ischiensis_contig83:516830..5169281695741027.6512973-CDS-S-ischiensis_contig83:516830..516928Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 516831..516928 -
1622817324.764182-CDS-S-ischiensis_contig83:518075..5182271622817324.764182-CDS-S-ischiensis_contig83:518075..518227Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 518076..518227 -
1695741027.660299-CDS-S-ischiensis_contig83:518075..5182271695741027.660299-CDS-S-ischiensis_contig83:518075..518227Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 518076..518227 -
1622817324.7758162-CDS-S-ischiensis_contig83:519157..5192881622817324.7758162-CDS-S-ischiensis_contig83:519157..519288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 519158..519288 -
1695741027.6690383-CDS-S-ischiensis_contig83:519157..5192881695741027.6690383-CDS-S-ischiensis_contig83:519157..519288Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 519158..519288 -
1622817324.7871976-CDS-S-ischiensis_contig83:519581..5197271622817324.7871976-CDS-S-ischiensis_contig83:519581..519727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 519582..519727 -
1695741027.6779032-CDS-S-ischiensis_contig83:519581..5197271695741027.6779032-CDS-S-ischiensis_contig83:519581..519727Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 519582..519727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20019.1

>prot_S-ischiensis_contig83.20019.1 ID=prot_S-ischiensis_contig83.20019.1|Name=mRNA_S-ischiensis_contig83.20019.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=241bp
GPLSGPGPGETAADVTCESCEDEWHLACLPEGARAVAEAQPGGQFICPRC
AALEDGPSAAGWGKPRRGPAGNTRPNVQFEPATNFPPGFQQEASGKGARA
GGSLDVSTRLYLSPTGMLLRGYSAAEAAWRQYDERAAAAADPKAAKTGAR
RAGHYPGPREEWDCNAQFLQVAGFDRARGSIDDPAPGAEAALPLDGVFGL
GRPEVRARVEGLPNAGLCHLYDLKAAGQPQDASRSQAAEKA
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mRNA from alignment at S-ischiensis_contig83:514608..519727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20019.1 ID=mRNA_S-ischiensis_contig83.20019.1|Name=mRNA_S-ischiensis_contig83.20019.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5120bp|location=Sequence derived from alignment at S-ischiensis_contig83:514608..519727- (Schizocladia ischiensis KU_0333)
GGCCCCCTGTCCGGCCCGGGCCCCGGGGAAACAGCGGCAGACGTGACCTG
CGAGTCCTGCGAAGATGAGTGGCACCTGGCCTGTCTGCCGGAGGGGGCAA
GGGCTGTGGCCGAGGCCCAGCCGGGCGGCCAGTTCATCTGCCCCAGGCAA
GGCAGTAAGCTCCGCCCCCCCGCCCCGCCCCGCCGCATCGAGCGGAACGC
CCCCTCCCCCCTCTCCCGCCCCTCCCCCTGCCTGAGTGTTTTGTCTGTGC
GCATGGAGTGGAGGAGGCACGGCTGTGTCTGCGCGGCACCCTGTGTGTGT
GCATGGGTGGGTAGGTGGGTGGGTGCGTGGGCTATATCATATCGTGCTTG
CATTGGGCCCTGAGACTGCTGAATACAGGCAAGGTAGAGCGTAGCGGTTT
TGACGTGCCATCACATTACTTACGTGGCCTGCGCGACAGGTGCGCTGCGC
TGGAGGACGGGCCGTCGGCGGCAGGCTGGGGAAAGCCGCGCCGGGGCCCC
GCCGGAAACACCCGCCCGAATGTCCAGTTCGAGCCTGCCACCAATTTCCC
TCCCGGGTTCCAACAAGAAGGTAGGTGAATCACGTAAATTGTAACGAGGT
ACAATCACACGTGAGTGAGATTGAGTGTTCTCGTGTTAGTGGCTATCCCA
TTTAAGAATTGAGGGTTCTCGTGCTACTGTAGTGATTATCACATCAAAGA
AGGTAGGTAGCGAAGGGTTTGAAGGAGCAGGGCGGTGCAGGCATGGGGGA
TGGGGGTTGGGACCAATTGGCGAGCGAGAAATGGATTGATAATGACGCCG
GTGCCAATTGGTGGGGGCTCCCCCCATTGCCTTGGACCTTGCGTCCTGGC
AGGGATGGGTAGGTACTACTGTAGTATCTGTTGCATGGCCAGAGCTCCGG
GGCCAGCGTCCCTGTCGCTTGGTCGAAAGGAAGGGTTTTGTTTGCCGGGT
CGCGACGACCCACCGCCCTTGTGCTTGACTCGTTACAGAAGGGCTTTTCT
GGGCTCTCATCTCCCGTCGCTGAAACTTCCCATGTCTATTTTGTTGTTTT
TTGTGCCCCCCAGCAGGCGCGCGACACATGGGCCAACCCAAACATCCCAT
CTCACCTCACCGTGTGACATCACTGCATTCCCAGCCCCCTCCCACCCGCC
CACCCTGTGCTCCCGCCCCTTTTCCGTGCATGCCACAGACCCACCGTCGT
AGCCCGCGACAGTGCTCAACCCTGATCCCCCCTGCCGGCCCCACGTGCCA
CCCACAACCGAAATGCACCTCCTCCCACTGGCGGAGGCGCTCGCCACCCC
CTCCCCGCCCTTGTCTCCCGTGGATGGCCACGCGGTCACGGCGGCGGGCT
GGCGGGTTGATGAATGCCCCATGCCCACGTGTGGCGGCTTCACTTTTCTC
TAATTCTTAATTCTTAAAAACCAAGATTTAGAAAGCAAACAAAATCAAGA
ATGGAATCAAAATTTAAAGTTTCCCCTCCTTCCATACTGGCGGTCGGCAG
CAAGTGGCAAGGGTGCCAGAGCAGGCGGTTCCCTGGACGTGTCGACCCGC
CTGTACCTGAGCCCCACGGGGATGTTACTACGGGGGTACTCGGCGGCGGA
GGCCGCGTGGAGGCAGTACGATGAGCGGGCGGCGGCCGCAGCGGATCCTA
AGGTGCTGCACTTGTGTTTAACCCGTTCACCCCTGGTCAATTGGACTTAC
ACACGAAAACCCTATGATGATACGGACCCCAGGGGTAAAGGGTTAAGGCG
GGTGCCCCTAGGCACCTCTGTTGTCTGAGGGGCCCCTCTGAATTAGCGTG
GGCGTAGAGTAGATGCCGCTATGGTGCACGGAGCGAGCTTTTTAGTTTGT
GGAGTGTCTCGACGTGCTTGTGCGGGTGCTTGGAAGTACTTCCGGAGGAG
ATTTGAAGTACTTCCGGGAAGGAGGAAGTACTTGTTTGCGACCAGGCTCT
TTGAGTCGCGTTGGGAGTACCTGCAGTGCGGTACCTACACAGGAGTCAAT
AGTAGGCACAGATGTGTACAGTAGGCAGTTACTTGGGGAGTACTTCGAGA
AGTACCGTACAGCACAGTAAGGTACATGGGAGTCAAAATTAGGCGCGCCC
CAGAGGTCGCAGATTCATTATTCCCTGGACTGCTGCCGCAGCTGCAGCCG
CGGTACGTCCTCCCTAGAGGCGGCTTCTCTGTACTCGTGTCAGCACCATA
TACTCGAGTATATAAGGAAGGGCCACTGTTGAGATATTTTGTGACGTGGC
CTGCACCTCGCCCTGTGTTGTTCCTGTTAATACTTCGGCACCTTCCCCAG
AAGTGCTACTGTGCGCGTGTTTCTGGTACTCATGTTCTCTTGGGTACGGA
TCTGACCGCCCCCCCGCCGTGAGCAGGGGGGGGGGGGGGGGTCCCCCCCC
ACCCTGGCTTGCCGAGGGTGGGAGGGAGGTTGCTCCGCCGTCAATGGCGC
GTGGTCAATGGTCTCGAGACTACGGCAAGCACAACATGAGTGCATATGCT
ACGAGTACATAAATATACGTATGTGCTCTACTACTGTATGGTAGTAGTCA
AAAGTACAGTAGAGCTCTACCGCCCGTAGTACTTTTGACTACACACAATT
CTTGCTGTCAGAACGGCGGGGATTTCCCCGCGTTCTGACACTTGCTTGGC
ACAAACTGTGGTGTGTGCGCTGCGTAGGGGTAGTGAGTGGTACGGCCAGC
CCCCCCCGCGGCGGCCCGCCCTCCGGCCCGCCCGCCCGCCGTTCTCCCCG
CCCCGCTCCCCTGACCCATCGATTCTTTTTGGTCGGGCGTTCCTCGCAGG
CGGCCAAGACGGGGGCAAGGCGGGCCGGGCACTACCCGGGCCCACGCGAG
GAGTGGGATTGCAATGCGCAGTTCCTGCAGGTGGCGGGCTTTGACCGGTG
AGAGGATAAAGGGAGGGGGCCGACCGATCCATCGCGACTCCCCCCCCAAT
GGAATCAACTGGTCGATTGACTCGGCCAATTGCTGCGACCGACCCAGGAT
GAAGGGAGGGGGCCAACCAATCCATTCATGAACCCCCCCCCCCTGGCAAC
CAATGAAATCAACCAGTGGATTGTCTCGGCCAATTGCTGCGACCGACCAA
AGTTGTTTGGCCATGAAGCTCGTGACCCCCTGTTAAGCAAGGGAATCAAC
CGATCGATTGTCTCAGTCGATCTCTGCGACCGCCGACCCCAACACCCTGG
ACCAATCGACTCAGGACCCCCAGTCAACCAAACCAAATCAACCACACTGA
TGCTCTTGGTCGGTGCCAAAAGCTCACACGTCTGCTCGGGCAAGCAAGGA
AACGATGGCCCTGGAGTAATCCATCCTTCCGCATTGGGACACACCGATGG
TCAACAGTCATATGCCTTTGGTGAGCAACTCATGGAACCCCCCCCCCCTC
CCTTCGCCGCCGCAATTGCGCCAATGCCTCGCGACATACGGACACTTGGG
CCCGTGGGCCCGTCCGCTGGTGGGCCCGGGCACTGCTGGGCCCGTGGGGC
AGGGCCCGCGGGAGCATTGATGACCCGGCCCCGGGGGCGGAGGCTGCCCT
GCCCCTGGATGGCGTTTTTGGGCTGGGCCGGCCCGAGGTGCGGGCACGTG
TGGAAGGGCTGCCCAACGCGGGGCTCTGCCACCTCTACGACTTGAAGGTG
CGGGGGGGCGAGAGAAGGAACAGCCCTTGAGGATACTTTGCAGCCCTGTG
TGCTGTGGGTTTTTTCTTTGCGCGCGCTGCGATGAGCGATGGTGCATGTA
TGTCGGTGGATGCTTGGAAGTACCCTCCTCGTGCGCGTGAAGTCCAGCGT
GTGTCTACTTATGTACGAGTGCTCGCGTCATGCTTGCTGTACGGTAAATT
AGTCCCGAGACCACTGACCGCCCCCGGGGCTCGATCGACGGGGCGGAGCA
GCCCCCCCCCCTCCCGGCACCGGCACAGGTGGAAGCCCGGGACAGAAGTA
TTTTCCGTGGCACGCCCGCACGGCGCCGCTGTACACACAGTACTATACGC
GAGTTCAGCGGTGCCTTCAAGTACAGCTATAGGAGAGCAAGGGGTAGTTT
TTTGTGCCTGCGGGTGAAAAGAGGGGCTTCTGGTGAGGTCCGCGCCTCAG
GTTTTTGGGACGGGGCCCGGAACTCGCATACCATCACAGTAATTAAATAA
GGGGTAAGGGATGCAGCCAACAGACGTTCTCTTCTGTATGTACTTGTAGT
TGCTGTACGCTGAGGGTTTGGGGCGGGGCGGGGGCGGGCCTGCTGGCTGA
GGGCGCTGGTCGTTGCCATGCTCCGCATGATTGATCAGGCCAGGTTGGCA
CCCGGGGCGTGCGGGTGTGCAATTGCGCAGTGTTGCGGGCCTGACCCCCA
ACACGTGTGGCAGGAGGTGGCTGCACCAGCAGCGAGCGTCTGCCACGGAG
GGGACACTTCGGCTCTCTACCTCCCTCTCTCTCCCTCCCTCTCTCTACCT
CTCTCTCTCTCTCCCCCTCCCTCTCTCTCCCTCTCTCTCCCTCCCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACGCACCCC
CTCCGCCTCTTCCTCCCCCGCCCCCAAGCCGGGATGAGACCCCCTTCTCC
ATCAGTAGGGTCTTCGTTGTGGCATGTGCATGCCACTGCCCTCACCGCAT
GGTCATGTGGGAAGGGCAAGCGACAACCGAGCCTTATGAGATGCGGTAGT
CGCTGTCCACACTCTACTATAAAATACGGTCGTACTTCCAGAAGAGGCAA
TGCATGGGTGCCTGCCCCCGCCCTGTGCACCCCGGGCGGCGTACCCCTCC
ACAAATCCTGAGATGCCGGACCTGGTGTGCTACACGTATGTGTGTGCGTG
TTTGTGATGCCAACAAGTGCTTGGCGAGGGAGAGAGGGGCAAACGCACGC
ACGTGTGTGAGACGGAGCGCGCTCGCTGAAACACGTGACTGGGGGTTACA
AAATCGGGCACGCAGCGAAACGGTGACCGTGGGCTTGATGAAGAGTTTGT
TGTGGTCTGTTTTATGGTATTATGATGGAAGAGTTGGTCTGTTTCGTGCG
CTCCTTCCGCTCGGCAGGCGGCGGGGCAGCCGCAGGACGCGTCAAGGAGC
CAAGCGGCGGAGAAGGCCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:514608..519727-

>mRNA_S-ischiensis_contig83.20019.1 ID=mRNA_S-ischiensis_contig83.20019.1|Name=mRNA_S-ischiensis_contig83.20019.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1446bp|location=Sequence derived from alignment at S-ischiensis_contig83:514608..519727- (Schizocladia ischiensis KU_0333)
GGCCCCCTGTCCGGCCCGGGCCCCGGGGAAACAGCGGCAGACGTGACCTG
CGAGTCCTGCGAAGATGAGTGGCACCTGGCCTGTCTGCCGGAGGGGGCAA
GGGCTGTGGCCGAGGCCCAGCCGGGCGGCCAGTTCATCTGCCCCAGGGCC
CCCTGTCCGGCCCGGGCCCCGGGGAAACAGCGGCAGACGTGACCTGCGAG
TCCTGCGAAGATGAGTGGCACCTGGCCTGTCTGCCGGAGGGGGCAAGGGC
TGTGGCCGAGGCCCAGCCGGGCGGCCAGTTCATCTGCCCCAGGTGCGCTG
CGCTGGAGGACGGGCCGTCGGCGGCAGGCTGGGGAAAGCCGCGCCGGGGC
CCCGCCGGAAACACCCGCCCGAATGTCCAGTTCGAGCCTGCCACCAATTT
CCCTCCCGGGTTCCAACAAGAAGGTGCGCTGCGCTGGAGGACGGGCCGTC
GGCGGCAGGCTGGGGAAAGCCGCGCCGGGGCCCCGCCGGAAACACCCGCC
CGAATGTCCAGTTCGAGCCTGCCACCAATTTCCCTCCCGGGTTCCAACAA
GAAGCAAGTGGCAAGGGTGCCAGAGCAGGCGGTTCCCTGGACGTGTCGAC
CCGCCTGTACCTGAGCCCCACGGGGATGTTACTACGGGGGTACTCGGCGG
CGGAGGCCGCGTGGAGGCAGTACGATGAGCGGGCGGCGGCCGCAGCGGAT
CCTAAGCAAGTGGCAAGGGTGCCAGAGCAGGCGGTTCCCTGGACGTGTCG
ACCCGCCTGTACCTGAGCCCCACGGGGATGTTACTACGGGGGTACTCGGC
GGCGGAGGCCGCGTGGAGGCAGTACGATGAGCGGGCGGCGGCCGCAGCGG
ATCCTAAGGCGGCCAAGACGGGGGCAAGGCGGGCCGGGCACTACCCGGGC
CCACGCGAGGAGTGGGATTGCAATGCGCAGTTCCTGCAGGTGGCGGGCTT
TGACCGGCGGCCAAGACGGGGGCAAGGCGGGCCGGGCACTACCCGGGCCC
ACGCGAGGAGTGGGATTGCAATGCGCAGTTCCTGCAGGTGGCGGGCTTTG
ACCGGGCCCGCGGGAGCATTGATGACCCGGCCCCGGGGGCGGAGGCTGCC
CTGCCCCTGGATGGCGTTTTTGGGCTGGGCCGGCCCGAGGTGCGGGCACG
TGTGGAAGGGCTGCCCAACGCGGGGCTCTGCCACCTCTACGACTTGAAGG
GCCCGCGGGAGCATTGATGACCCGGCCCCGGGGGCGGAGGCTGCCCTGCC
CCTGGATGGCGTTTTTGGGCTGGGCCGGCCCGAGGTGCGGGCACGTGTGG
AAGGGCTGCCCAACGCGGGGCTCTGCCACCTCTACGACTTGAAGGCGGCG
GGGCAGCCGCAGGACGCGTCAAGGAGCCAAGCGGCGGAGAAGGCCGCGGC
GGGGCAGCCGCAGGACGCGTCAAGGAGCCAAGCGGCGGAGAAGGCC
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