mRNA_S-ischiensis_contig83.20016.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20016.1
Unique NamemRNA_S-ischiensis_contig83.20016.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:504733..506313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.6309333-CDS-S-ischiensis_contig83:504734..5050361622817324.6309333-CDS-S-ischiensis_contig83:504734..505036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 504735..505036 -
1695741027.5914495-CDS-S-ischiensis_contig83:504734..5050361695741027.5914495-CDS-S-ischiensis_contig83:504734..505036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 504735..505036 -
1622817324.646255-CDS-S-ischiensis_contig83:506267..5063131622817324.646255-CDS-S-ischiensis_contig83:506267..506313Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 506268..506313 -
1695741027.6030524-CDS-S-ischiensis_contig83:506267..5063131695741027.6030524-CDS-S-ischiensis_contig83:506267..506313Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 506268..506313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20016.1prot_S-ischiensis_contig83.20016.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 504735..506313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20016.1

>prot_S-ischiensis_contig83.20016.1 ID=prot_S-ischiensis_contig83.20016.1|Name=mRNA_S-ischiensis_contig83.20016.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
GGRDERVPTLPTTRADTDMEAPGGLCHLCGGSDLAGGPVMQGDTFVILPE
ELKMPPQALVDVFSTLCRGRGLTGATATAAASAAVSPSSSLSPASSPGMA
WLRRRWRRRRRQPGDR
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mRNA from alignment at S-ischiensis_contig83:504733..506313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20016.1 ID=mRNA_S-ischiensis_contig83.20016.1|Name=mRNA_S-ischiensis_contig83.20016.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1581bp|location=Sequence derived from alignment at S-ischiensis_contig83:504733..506313- (Schizocladia ischiensis KU_0333)
GGTGGCAGGGATGAGCGCGTGCCCACGCTGCCCACCACCCGTGCCGGTGA
GGTCGGAGGCGCTATTTTTGTTATTTTTTGCGGTCAAGTCGCAGGCGTGC
AGGTTCAGTGCAGTTCTTCAGGTCGTGCGTGTGCGCTGCCGCTCTAAGCA
CAGACAGTACCTGCCCTACTTCCCTGTAGGCACTACATTACAAGTACAGT
ACTGCAGTACTCTACTGGTATGCATGCTTGTTTTGTGTACGAGTAGTACA
GTAGTAGGGCTGCGCCCACCGGGGCCGGTAAACGCGGCCGTGCTCTCCCC
CCGCCCGCCAATTTTTCCCCCTGCCCTTCGCGCGGCCCTGCCCCACATTC
AGGTTGACTATTAGTGACGTACGTCACGGTGCGTGTGAGTTGCCCCAGTC
CTGGTGCGCTGTACCTATAAACGTATCCCGCGATGTGCACTCACTCCTCT
ATGCATAGTTTTGCAATCGCTCCTGTGTGCACAGGCAACGTCGAGACGCG
CACGCCATGCTGTTTGCAACCGGCCCCTGTACTCGAGGCGCCAGGCCCAG
CGTGCCGGCCGGCCAGCCCCCCGGTCACGCCCGTCCCGACGAGGCGGGCG
CACAGCTCAACAGATTTCCTGCTTACGCGAGTTCACGGCGCGTGCATTTT
TTGTTTCCCGCGAGGTGGCGTGCCGCCGCCAGTTCGAGGTGTCGCGCCAG
GACAATGAAATCTGCCTTGTCGCCTCCTACCCCCTTCTCTCCCGACTGTG
ACCTTGTTGACTCTGTTAACTTATCGCCTTTGACGTGCCACTCGACTCAA
CTACTAATACAAGATCACTCAATCTCACACACGTGCGATTGTACCTCGTT
GCAGTATTTTTTAATCACCACTCGACTCGACCCACGGCTCTCCCATCCAT
TTGCGGCAATCCCTCAGGAGCCCAACCCCGCCCCTATCGCCCGGCATTCC
TGACCCCCCCCCCCCCTCTGCCTCTGCCCGTGGGGCCGCTCCCCTATACC
TGCCGCCGCTGCGATGGCCCCGTGGGCCCCCGTGGTGTCAATGCCTCTGC
CCGCCACAATATGCACACGTGTGCGAAATGCACACCCGTAGAAGCGCACA
CGAACGTACACGTATGCACAGACACAGGCACGCTCACGCGCGCGCACACA
CACACACGTGCTCACACGCACACACACACGTTGCTCACAACACACACACA
ACTCACGAACGCACACGCACACACCACGCTACGCGCACGCACACGCACAA
CACACACACACACACACACACACGCAGACACAGATATGGAGGCGCCGGGG
GGCCTATGCCATCTGTGCGGGGGCTCCGACCTGGCAGGGGGGCCCGTGAT
GCAGGGCGACACGTTTGTCATCCTCCCGGAGGAGTTAAAGATGCCACCCC
AAGCCCTTGTGGATGTCTTCTCCACCCTTTGCCGCGGCCGTGGCCTCACC
GGGGCCACCGCCACGGCGGCTGCGTCCGCCGCGGTGTCGCCGTCATCGTC
GCTGTCACCGGCATCATCCCCGGGCATGGCCTGGCTGCGACGGCGGTGGC
GGCGGCGACGACGGCAGCCAGGGGATAGAGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:504733..506313-

>mRNA_S-ischiensis_contig83.20016.1 ID=mRNA_S-ischiensis_contig83.20016.1|Name=mRNA_S-ischiensis_contig83.20016.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=696bp|location=Sequence derived from alignment at S-ischiensis_contig83:504733..506313- (Schizocladia ischiensis KU_0333)
GGTGGCAGGGATGAGCGCGTGCCCACGCTGCCCACCACCCGTGCCGGGTG
GCAGGGATGAGCGCGTGCCCACGCTGCCCACCACCCGTGCCGACACAGAT
ATGGAGGCGCCGGGGGGCCTATGCCATCTGTGCGGGGGCTCCGACCTGGC
AGGGGGGCCCGTGATGCAGGGCGACACGTTTGTCATCCTCCCGGAGGAGT
TAAAGATGCCACCCCAAGCCCTTGTGGATGTCTTCTCCACCCTTTGCCGC
GGCCGTGGCCTCACCGGGGCCACCGCCACGGCGGCTGCGTCCGCCGCGGT
GTCGCCGTCATCGTCGCTGTCACCGGCATCATCCCCGGGCATGGCCTGGC
TGCGACGGCGGTGGCGGCGGCGACGACGGCAGCCAGGGGATAGAACACAG
ATATGGAGGCGCCGGGGGGCCTATGCCATCTGTGCGGGGGCTCCGACCTG
GCAGGGGGGCCCGTGATGCAGGGCGACACGTTTGTCATCCTCCCGGAGGA
GTTAAAGATGCCACCCCAAGCCCTTGTGGATGTCTTCTCCACCCTTTGCC
GCGGCCGTGGCCTCACCGGGGCCACCGCCACGGCGGCTGCGTCCGCCGCG
GTGTCGCCGTCATCGTCGCTGTCACCGGCATCATCCCCGGGCATGGCCTG
GCTGCGACGGCGGTGGCGGCGGCGACGACGGCAGCCAGGGGATAGA
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