mRNA_S-ischiensis_contig83.20001.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20001.1
Unique NamemRNA_S-ischiensis_contig83.20001.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:420675..422361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.3537886-CDS-S-ischiensis_contig83:420674..4207421622817324.3537886-CDS-S-ischiensis_contig83:420674..420742Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 420675..420742 +
1695741027.3988895-CDS-S-ischiensis_contig83:420674..4207421695741027.3988895-CDS-S-ischiensis_contig83:420674..420742Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 420675..420742 +
1622817324.3644814-CDS-S-ischiensis_contig83:422233..4223601622817324.3644814-CDS-S-ischiensis_contig83:422233..422360Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 422234..422360 +
1695741027.4112873-CDS-S-ischiensis_contig83:422233..4223601695741027.4112873-CDS-S-ischiensis_contig83:422233..422360Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 422234..422360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20001.1prot_S-ischiensis_contig83.20001.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 420675..422360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20001.1

>prot_S-ischiensis_contig83.20001.1 ID=prot_S-ischiensis_contig83.20001.1|Name=mRNA_S-ischiensis_contig83.20001.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=65bp
PGYHGRPQATSGATAGSFYSRNSHPPAPAASRTNLGPLRREASSCNNTLG
TLSVSEARPAALVGG
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mRNA from alignment at S-ischiensis_contig83:420675..422361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20001.1 ID=mRNA_S-ischiensis_contig83.20001.1|Name=mRNA_S-ischiensis_contig83.20001.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1687bp|location=Sequence derived from alignment at S-ischiensis_contig83:420675..422361+ (Schizocladia ischiensis KU_0333)
CCTGGCTACCACGGCCGACCACAGGCCACATCGGGAGCCACAGCGGGGAG
CTTTTATTCTCGCAACAGGTGATGTGCCGTCCGAAGAATCAGTTACCTAC
TGGCAGTAAGACCAGGCATTCCGACGGGAAAGCTGTGAGCTCTGTACATG
ATGAAAACTGTGCATTGCAGGGCATTTGCGCCCGGCACCAATCCCCGCTC
AAGAATGTCGCACATTCTCCGGTCCACACGCACAAACGTCATATTATACT
GCAACCAATAGGGACATCCCGTCGCTATACTGCTACCATGTCCCTCGGTT
ACATATGCGCCTTTTCCTACCCACCTGTGGCCCCACATTTGGTTGGCACA
AGAATCGATATTTGGCGACTTGTACCTCGTCGGACTGTGGCCATGACCTT
GCGACGGCGTCTTTCACTTGGTGTAGTGCTCTCTTCGCCCCTGCTGCCAA
TCGCTGTCTCAGGCAGGCAGGCGATGCCGCCCCTCTTTTTGTTTCCTGCG
TGTGGCATGAGCAGGTGGTGGGTAGGTAGCGGTTTTGAGTGTTTAAAGCA
CATACACTGCGATTGTACTTGTACGTACGGAGCCTATGCTGATACCCTTT
AGCACGAAAAATCTCAGATGCCGGCAATGTAGAGCTCCAAGCTACCATGG
TCCCTCTACATTTTGTATGCGCCAGGCCCCACTCTGGCAAGCCAAGTACA
TTGTTTGTGCAGCGAATGTACTTCCAAGACCTTGAGAAGCACAGACGGTT
TACACAGTGCAACAGAGACGAGGGGCAATGACGACAAGTAAAAGGTTCGA
ACGCCCGGTCCGCAGACCCGCCGCTGCCGCGGCCTCCCCAACCACAAAAA
CACGGCGAGACGAGGGCCGGGGGTGGGGCACCGGAGCAATATGGCGTCTC
CATCCCCGTGCCGACCCAAAACGGGCCGGCATTGGCCGGTCCGTAACTGC
TCGCGATATTTCCGCCGGCCGCCGAAAGGCGGGGGCCCCGGCCGTGAGAT
GTCGGCGGGGCTCCAGGGCGGCGCCCTCGCCACGCTTTTTGCGTGGCGGG
GACCGACCGGCACACAGCGGGGGAATCTGGCTGCGGCGGCCTCTCGGGCA
TGGTCGGGCATGAGAATGAAAAGGCGAAACGGAGCCCTCTCCTCTCTATA
TCTACTGTATCTCTCGTACTTGAGATGCGTGTACAGTACTATAGTAGTTT
GCCGCAGAACGGTGTTTAATGGGTCTCGTGGGTCCTCCCGAGTGCTACGG
GGGTCGCGTGACGAGGTTTTGCCTATGCTGCCGCCTGTGTCGTCTCGAGC
GGCGGTGATGGGCCGATTTGGGGTGTGTGGTGGCCTCAAATATACGCCTG
CGGCAGACATCTACTCGTGCACACGCACACACACACACACACACACGCAC
ACACACACCTGTGCACACACCTCGCAAGTTGTTCCCTAGATACGCGGCAC
TTGCAGGTACGCATTCACGGCCATGCACACAAGCACACAGAGCGAGCCGC
CGCCGGTGGCGCCCCCTCCGCCCCCCCGTGAACCACCCCCGCCTCCCTCT
CCCTGCCAGCCACCCTCCTGCCCCAGCTGCCTCCCGCACCAACCTGGGGC
CGCTTCGCCGCGAAGCGAGCAGCTGCAACAACACCCTTGGGACACTTTCA
GTGTCGGAGGCGCGGCCAGCGGCGTTGGTCGGGGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:420675..422361+

>mRNA_S-ischiensis_contig83.20001.1 ID=mRNA_S-ischiensis_contig83.20001.1|Name=mRNA_S-ischiensis_contig83.20001.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=390bp|location=Sequence derived from alignment at S-ischiensis_contig83:420675..422361+ (Schizocladia ischiensis KU_0333)
CCTGGCTACCACGGCCGACCACAGGCCACATCGGGAGCCACAGCGGGGAG
CTTTTATTCTCGCAACAGCCTGGCTACCACGGCCGACCACAGGCCACATC
GGGAGCCACAGCGGGGAGCTTTTATTCTCGCAACAGCCACCCTCCTGCCC
CAGCTGCCTCCCGCACCAACCTGGGGCCGCTTCGCCGCGAAGCGAGCAGC
TGCAACAACACCCTTGGGACACTTTCAGTGTCGGAGGCGCGGCCAGCGGC
GTTGGTCGGGGGACCACCCTCCTGCCCCAGCTGCCTCCCGCACCAACCTG
GGGCCGCTTCGCCGCGAAGCGAGCAGCTGCAACAACACCCTTGGGACACT
TTCAGTGTCGGAGGCGCGGCCAGCGGCGTTGGTCGGGGGA
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