mRNA_S-ischiensis_contig83.19992.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19992.1
Unique NamemRNA_S-ischiensis_contig83.19992.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:279824..280311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.5257509-UTR-S-ischiensis_contig83:279823..2798311622817325.5257509-UTR-S-ischiensis_contig83:279823..279831Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 279824..279831 +
1695741028.0350463-UTR-S-ischiensis_contig83:279823..2798311695741028.0350463-UTR-S-ischiensis_contig83:279823..279831Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 279824..279831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.5420504-CDS-S-ischiensis_contig83:279831..2803111622817325.5420504-CDS-S-ischiensis_contig83:279831..280311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 279832..280311 +
1695741028.0496297-CDS-S-ischiensis_contig83:279831..2803111695741028.0496297-CDS-S-ischiensis_contig83:279831..280311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 279832..280311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19992.1prot_S-ischiensis_contig83.19992.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 279832..280311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19992.1

>prot_S-ischiensis_contig83.19992.1 ID=prot_S-ischiensis_contig83.19992.1|Name=mRNA_S-ischiensis_contig83.19992.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp
MPRAGRRGPPLAQPPPLPLPPPPPPQPPASSGPSPPRAGGPAPPGPEPPP
LAQRQAPWRGLPAGRRGQSPAPGPPHLQRPLLPVEPGIASLRAAGPALPG
PGPPPPSQMQARPRGPPAGMPTRPPAIGPPSPLPPPPLPLPHPVPGTEPL
RGAGPAVPGP
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mRNA from alignment at S-ischiensis_contig83:279824..280311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19992.1 ID=mRNA_S-ischiensis_contig83.19992.1|Name=mRNA_S-ischiensis_contig83.19992.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=488bp|location=Sequence derived from alignment at S-ischiensis_contig83:279824..280311+ (Schizocladia ischiensis KU_0333)
GGCAGCCAATGCCTCGCGCAGGGCGGAGAGGGCCACCTCTTGCGCAGCCG
CCGCCTCTGCCGCTGCCGCCGCCGCCACCGCCTCAGCCTCCCGCTTCAAG
CGGGCCGTCTCCTCCACGTGCAGGCGGTCCCGCTCCGCCAGGGCCTGAGC
CCCCTCCTCTCGCGCAGAGGCAAGCTCCGTGGCGTGGGCTTCCCGCAGGG
AGGAGAGGGCAGTCTCCTGCTCCCGGGCCGCCACATCTGCAGCGGCCTCT
GCTTCCTGTTGAGCCCGGGATAGCCTCGCTGCGTGCAGCTGGTCCCGCTC
TGCCAGGGCCCGGGCCCCCTCCTCCCTCACAGATGCAAGCTCGGCCGCGT
GGGCCTCCCGCAGGGATGCCAACGCGGCCTCCCGCAATTGGACCGCCCTC
GCCGCTGCCTCCCCCGCCTCTACCCCTGCCTCATCCCGTGCCTGGGACAG
AGCCTCTGCGTGGAGCCGGTCCCGCTGTGCCAGGGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:279824..280311+

>mRNA_S-ischiensis_contig83.19992.1 ID=mRNA_S-ischiensis_contig83.19992.1|Name=mRNA_S-ischiensis_contig83.19992.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig83:279824..280311+ (Schizocladia ischiensis KU_0333)
ATGCCTCGCGCAGGGCGGAGAGGGCCACCTCTTGCGCAGCCGCCGCCTCT
GCCGCTGCCGCCGCCGCCACCGCCTCAGCCTCCCGCTTCAAGCGGGCCGT
CTCCTCCACGTGCAGGCGGTCCCGCTCCGCCAGGGCCTGAGCCCCCTCCT
CTCGCGCAGAGGCAAGCTCCGTGGCGTGGGCTTCCCGCAGGGAGGAGAGG
GCAGTCTCCTGCTCCCGGGCCGCCACATCTGCAGCGGCCTCTGCTTCCTG
TTGAGCCCGGGATAGCCTCGCTGCGTGCAGCTGGTCCCGCTCTGCCAGGG
CCCGGGCCCCCTCCTCCCTCACAGATGCAAGCTCGGCCGCGTGGGCCTCC
CGCAGGGATGCCAACGCGGCCTCCCGCAATTGGACCGCCCTCGCCGCTGC
CTCCCCCGCCTCTACCCCTGCCTCATCCCGTGCCTGGGACAGAGCCTCTG
CGTGGAGCCGGTCCCGCTGTGCCAGGGCCCATGCCTCGCGCAGGGCGGAG
AGGGCCACCTCTTGCGCAGCCGCCGCCTCTGCCGCTGCCGCCGCCGCCAC
CGCCTCAGCCTCCCGCTTCAAGCGGGCCGTCTCCTCCACGTGCAGGCGGT
CCCGCTCCGCCAGGGCCTGAGCCCCCTCCTCTCGCGCAGAGGCAAGCTCC
GTGGCGTGGGCTTCCCGCAGGGAGGAGAGGGCAGTCTCCTGCTCCCGGGC
CGCCACATCTGCAGCGGCCTCTGCTTCCTGTTGAGCCCGGGATAGCCTCG
CTGCGTGCAGCTGGTCCCGCTCTGCCAGGGCCCGGGCCCCCTCCTCCCTC
ACAGATGCAAGCTCGGCCGCGTGGGCCTCCCGCAGGGATGCCAACGCGGC
CTCCCGCAATTGGACCGCCCTCGCCGCTGCCTCCCCCGCCTCTACCCCTG
CCTCATCCCGTGCCTGGGACAGAGCCTCTGCGTGGAGCCGGTCCCGCTGT
GCCAGGGCCC
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