mRNA_S-ischiensis_contig83.19991.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19991.1
Unique NamemRNA_S-ischiensis_contig83.19991.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19991.1 vs. uniprot
Match: D7FWX4_ECTSI (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.210e-18
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:   13 GIVEVTSLEGYTEQLEAVLVRATVEAAAARQDFLERDMEFQNLARRHVDLKLVHAQLRERLEDTQIQLMRKAQSPAMRFFS 255
            G+VE  ++E Y E+LE VLVRATVEAA ARQD LE D++ Q + R+ V LKLVHAQLRE LEDTQ++L  K+QS A R  +
Sbjct: 1601 GLVEGLTMEKYAEELEVVLVRATVEAATARQDHLEADLQCQGVTRQLVGLKLVHAQLRECLEDTQVKLEHKSQSAARRLLN 1681
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX4_ECTSI3.210e-1860.49Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:275237..276883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7FWX4
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0245@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-09_004810.1
Exons3
Model size280
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19991.1prot_S-ischiensis_contig83.19991.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 275237..276883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817328.4952586-CDS-S-ischiensis_contig83:275236..2753081622817328.4952586-CDS-S-ischiensis_contig83:275236..275308Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 275237..275308 -
1695741030.4520278-CDS-S-ischiensis_contig83:275236..2753081695741030.4520278-CDS-S-ischiensis_contig83:275236..275308Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 275237..275308 -
1622817328.5088606-CDS-S-ischiensis_contig83:276181..2762831622817328.5088606-CDS-S-ischiensis_contig83:276181..276283Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 276182..276283 -
1695741030.467247-CDS-S-ischiensis_contig83:276181..2762831695741030.467247-CDS-S-ischiensis_contig83:276181..276283Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 276182..276283 -
1622817328.522041-CDS-S-ischiensis_contig83:276778..2768831622817328.522041-CDS-S-ischiensis_contig83:276778..276883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 276779..276883 -
1695741030.4778416-CDS-S-ischiensis_contig83:276778..2768831695741030.4778416-CDS-S-ischiensis_contig83:276778..276883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 276779..276883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19991.1

>prot_S-ischiensis_contig83.19991.1 ID=prot_S-ischiensis_contig83.19991.1|Name=mRNA_S-ischiensis_contig83.19991.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
EGGDGIVEVTSLEGYTEQLEAVLVRATVEAAAARQDFLERDMEFQNLARR
HVDLKLVHAQLRERLEDTQIQLMRKAQSPAMRFFSKLTGGAGH
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mRNA from alignment at S-ischiensis_contig83:275237..276883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19991.1 ID=mRNA_S-ischiensis_contig83.19991.1|Name=mRNA_S-ischiensis_contig83.19991.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1647bp|location=Sequence derived from alignment at S-ischiensis_contig83:275237..276883- (Schizocladia ischiensis KU_0333)
GAAGGAGGGGACGGCATTGTCGAGGTGACCAGCCTTGAGGGGTACACGGA
ACAGCTGGAGGCGGTGCTGGTGCGGGCCACGGTGGAGGCGGCGGCGGCGC
GGCAGGTGCGATGTGATGTGATGTGATGTGATGGTGATGTGTGCTCTAAA
GTGCTGTGCCTGGTTAGGATGATGATCATACCGCATTGGACTGGTAAAGT
CCCTGTCGCATTGGGGGGGGGGGAGGGTTGCACTAATGTGTACCAGTGGA
AGAGAGCGCCTTGGAAGCGCGTTGTGCTTGGTACATAGTGGAAGGGCATG
CGGGTACGCAGTCGTAGCAACATGCAAAAGGGGGGGAAGCTTTCTTGCTA
TGGCCTTCCATTTCGCCGGGGTGGGAACCGAGCCCCGATTTATCGTTTCT
GTACAGCATGCGGAGCCGATTCACACACATGTATATATACGAGTATACGA
AGTACTTCGGAGTATATAATACATACTTCGAAGTACACATACTACTGTTT
CCTCTTTGCGGGCGCGGCCTGCAGTTCAATGAGTCCTTTCCCGGCCTCGA
AACGGCGAAGAGCAAAATACAAACGAAGCCGATGTAAAACCGGCCGGCAG
GACTTCCTGGAGAGGGACATGGAGTTCCAGAACCTGGCCAGGCGGCACGT
GGACCTCAAGCTCGTGCACGCGCAGCTCCGTGAGCGGCTGGAGGACACGC
AGGTGTGTGTGTATGTGTGTGTGTGTGCGCGCGCATGGGTGCGTGTACGC
GTGCGTGTACGTGTGTGCACGCGTGTGTGTCTGCACGTGCGTGCGTGCGT
GTGTGTGTGTGTTTGCGTGCGTGTGTGCGTGTGTATGTGCGTGTGTGCGT
GTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGCAT
GCGTGCGTGCGTGCAGGTGCGTGTCCGTGTATATGCGTGCGTGTGTGAGC
TTCATCGCTTCTCCGCGGCGTGCGCCCGCGCACGCTCACGCACGCACATT
TCGCTTTTGCGGCCACTTGCGTGCGAAGATGATGACCGCATCGAAAAACG
AGCGGATTGCCTATAGGGAGGGGAGGATACCTGCTGTAGGCCTTTGGCGG
GCATGTCCCGTGCAGCATCATGGCCCACCAACATCACCATCACACCACAC
CACATCAAATTACACCACACTGCACCACACCACACCACATTGCATTTCAC
TTCAACGTCACATCACATCACACTCGCCCTTTCCCCACTGGGAAATTGGA
CCCCCATTCTAAGAATACTATGACCATTCGGACCCCAGGGGTAACAGGGT
TAAGCTTACCAAGTACATGACGTTTAGCGGTACTCGGACCCGCCGCAACG
ACTTGATGGCACCTCAGGCTGTTGTGATACTGACGTGGTACTGATGTTAC
GTGGTGTGATGCGCTGGGCACTCTAATGGACCTTGAGGCACTGCGGCTTG
ACATCACATCACACTGCACTAGGGGTGCCGATGCGGCACGACCCGGACAC
AACTCGAAGTACCTCTCCACCCTCTCGCCAACCCCCACTTTGCACACCAT
CCACGCCGCACGGTGTGCAATGCAGATCCAGCTAATGCGCAAGGCTCAGA
GCCCGGCCATGCGCTTCTTCAGCAAGCTCACGGGCGGGGCAGGTCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:275237..276883-

>mRNA_S-ischiensis_contig83.19991.1 ID=mRNA_S-ischiensis_contig83.19991.1|Name=mRNA_S-ischiensis_contig83.19991.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig83:275237..276883- (Schizocladia ischiensis KU_0333)
GAAGGAGGGGACGGCATTGTCGAGGTGACCAGCCTTGAGGGGTACACGGA
ACAGCTGGAGGCGGTGCTGGTGCGGGCCACGGTGGAGGCGGCGGCGGCGC
GGCAGGAAGGAGGGGACGGCATTGTCGAGGTGACCAGCCTTGAGGGGTAC
ACGGAACAGCTGGAGGCGGTGCTGGTGCGGGCCACGGTGGAGGCGGCGGC
GGCGCGGCAGGACTTCCTGGAGAGGGACATGGAGTTCCAGAACCTGGCCA
GGCGGCACGTGGACCTCAAGCTCGTGCACGCGCAGCTCCGTGAGCGGCTG
GAGGACACGCAGGACTTCCTGGAGAGGGACATGGAGTTCCAGAACCTGGC
CAGGCGGCACGTGGACCTCAAGCTCGTGCACGCGCAGCTCCGTGAGCGGC
TGGAGGACACGCAGATCCAGCTAATGCGCAAGGCTCAGAGCCCGGCCATG
CGCTTCTTCAGCAAGCTCACGGGCGGGGCAGGTCACATCCAGCTAATGCG
CAAGGCTCAGAGCCCGGCCATGCGCTTCTTCAGCAAGCTCACGGGCGGGG
CAGGTCAC
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