mRNA_S-ischiensis_contig83.19985.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19985.1
Unique NamemRNA_S-ischiensis_contig83.19985.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:255525..257599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size808
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19985.1prot_S-ischiensis_contig83.19985.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 255825..257599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.2493677-UTR-S-ischiensis_contig83:255524..2558241622817324.2493677-UTR-S-ischiensis_contig83:255524..255824Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 255525..255824 +
1695741027.3319175-UTR-S-ischiensis_contig83:255524..2558241695741027.3319175-UTR-S-ischiensis_contig83:255524..255824Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 255525..255824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.2604327-CDS-S-ischiensis_contig83:255824..2559261622817324.2604327-CDS-S-ischiensis_contig83:255824..255926Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 255825..255926 +
1695741027.344862-CDS-S-ischiensis_contig83:255824..2559261695741027.344862-CDS-S-ischiensis_contig83:255824..255926Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 255825..255926 +
1622817324.271997-CDS-S-ischiensis_contig83:257194..2575991622817324.271997-CDS-S-ischiensis_contig83:257194..257599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 257195..257599 +
1695741027.358812-CDS-S-ischiensis_contig83:257194..2575991695741027.358812-CDS-S-ischiensis_contig83:257194..257599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 257195..257599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19985.1

>prot_S-ischiensis_contig83.19985.1 ID=prot_S-ischiensis_contig83.19985.1|Name=mRNA_S-ischiensis_contig83.19985.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MMPGGGGNALGPQSFDTVDDVFLVAGLEAWEDLGGALPSGSSSIQPFPLE
DQSLYTGSETGGRSQRQQQQQSQQQQLQQQQQQQQQQEQQHHHHHPQNPQ
HGGGGTTAVKPEPHAQTAQPAVASSSPAGAGFLGVGHHHPLHADEPSAAT
AGGGPVGFASSIVVGGGRG
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mRNA from alignment at S-ischiensis_contig83:255525..257599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19985.1 ID=mRNA_S-ischiensis_contig83.19985.1|Name=mRNA_S-ischiensis_contig83.19985.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2075bp|location=Sequence derived from alignment at S-ischiensis_contig83:255525..257599+ (Schizocladia ischiensis KU_0333)
GACGGCTTCAGCCGCAGAGAGTTCCACGGAGGTGGCGCGCTCAACACCAC
ACCAATCAGGCCCAGCTTAAAGGGGGGTGGGGTTACCTGCTGGAACGTCT
TGGTGTCCGCGCACGCCTGTTCTCGGCCTTGCCTCTCCTGCATGTTGCGG
AAGCCCGGACACCACCCGAGTGGAGGGACGCGCCACATTCGGGCCTTCCC
CATGGGACCTCGAGCAGCTTATCTAGCTCGTTGACCGTGAGGGCTTGCTG
AGGGCAGGCCAGTTTGGCGCGACGGGCCAGGGGGCACCGGACAGAAGAAC
ATGATGCCGGGGGGCGGCGGCAATGCGTTGGGGCCGCAGTCATTCGACAC
CGTGGATGATGTGTTTCTCGTCGCTGGCCTCGAAGCGTGGGAGGATCTCG
GGGTGAGCAGTTGTCGCGCTCTCTGTTTGCATGCAGTGAGTGCATGATGC
ACGCGCCACTCACCGTGCTTGCACTGTGTGTGCGCAACGATGGGGGCTCC
CCCTCCAAGTTGTAGTTGTACCTCTTTCACTCTCACGCTGAGTTTTCTGG
CAGTTCCGGGTGACAAATTTTATTTTAGGGGTGGCTGCTTCAGCGGAAGC
CCTCCCCAGGGCATAGTACAACACTTAGTGCAGATATTCGTCAAGCTTCG
GCAAGTTTCTTTTTCATGTGTCGTCGCAGGCCAGGCGCTTTGTCGATTAT
TGCGCCTCGCGCTACTTAGAACTGAGATATGATTGTAGGAGGGACGCGTG
TTGTACCTGCAGGGGGCTGGAATGTACCGTTACTGGCTGCATGGCGGTGC
CTGCCTGCGAATCTCGGGGTCTTGAGCACATGTTTCTTCCAGGGTCAATG
TTGGCCACGGCAGGCGGGCATTGCGGGGGCAACAGTGCGCGCCGAGGGGC
GATCAAACACGGAAACGGCGCCGCTAGATTGCAGCTGGCCATAGGCGCCG
GGTGTTTCCCAAACGGCGCCGCGAAGCGCGAGGAAGAGCGGCCGCTATGG
CCTCCAACGTGTCACGCTATACACACGGACGTGCGCATACATGCACGCGG
CTGCCTGACTATCAATGGAGTTCAAGTACGCTTTGCTCCGCGTCCCCCCG
CCTTTGATACTGAAGCGGCACCTCCGAGGTTGCCCGTTCTCGCGTGCCAG
CACCGAGAGGGTTGAAAGAAAGCCGCCCTTGGTTGGCCCCGGGACGGTTT
GCCTCAAAGTGCACGCACACAAGCACCAGTAGGCCCCCCTCGTTTCACGC
ACTACTGTGGTGCGGTGTAGATCGCGTGCAACTGGGGCAGCAGGGGGCTA
GGGCTGCATCCCTTTGATGACGACGGGCGACTAGCGCGATGTGATGTGAT
ATGAAAACTGCCTCGGGGCCACCTTGCATGGACCGCGGCACTGGGCCTCG
CGCGCACCTCCCGCCCACCTGCCACACCGGAGAGTACAGTAGGCCGCTGG
TTGTCCCTGTTTGGCTTGGCGTGGCTGGCTTTAAAGCGGGACGGGGAGCG
CACGGCCTGCCGTGTCCTTGGGTTACTTACTACAGTACGAGTAGTAGTAT
TGCGTGATCGGGTCGATGCGGGATGGGACCCCGTCGAAATTGCACCTCCG
CCCAGCCTCTCACCGTAATGTGAAACGCCGCGATGTTTGACCGCGTGCGT
GCGTGCGTGCGCACACGCAGGGCGCCCTGCCCAGCGGCAGCTCCTCCATC
CAGCCCTTCCCGCTGGAGGACCAGAGCCTCTACACCGGATCGGAAACGGG
CGGCAGGAGCCAACGGCAGCAGCAGCAGCAGTCGCAGCAACAACAACTGC
AACAGCAGCAGCAGCAACAACAACAACAGGAGCAGCAGCACCACCACCAC
CACCCCCAGAACCCACAACACGGGGGGGGCGGCACCACCGCTGTCAAGCC
GGAGCCGCACGCCCAGACCGCGCAGCCAGCAGTGGCATCGTCGTCGCCAG
CCGGGGCCGGCTTCCTCGGTGTGGGCCACCACCACCCCTTGCATGCCGAC
GAACCCTCCGCGGCCACGGCGGGAGGGGGCCCGGTGGGCTTCGCGTCAAG
CATCGTGGTGGGAGGGGGAAGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:255525..257599+

>mRNA_S-ischiensis_contig83.19985.1 ID=mRNA_S-ischiensis_contig83.19985.1|Name=mRNA_S-ischiensis_contig83.19985.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig83:255525..257599+ (Schizocladia ischiensis KU_0333)
ATGATGCCGGGGGGCGGCGGCAATGCGTTGGGGCCGCAGTCATTCGACAC
CGTGGATGATGTGTTTCTCGTCGCTGGCCTCGAAGCGTGGGAGGATCTCG
GGATGATGCCGGGGGGCGGCGGCAATGCGTTGGGGCCGCAGTCATTCGAC
ACCGTGGATGATGTGTTTCTCGTCGCTGGCCTCGAAGCGTGGGAGGATCT
CGGGGGCGCCCTGCCCAGCGGCAGCTCCTCCATCCAGCCCTTCCCGCTGG
AGGACCAGAGCCTCTACACCGGATCGGAAACGGGCGGCAGGAGCCAACGG
CAGCAGCAGCAGCAGTCGCAGCAACAACAACTGCAACAGCAGCAGCAGCA
ACAACAACAACAGGAGCAGCAGCACCACCACCACCACCCCCAGAACCCAC
AACACGGGGGGGGCGGCACCACCGCTGTCAAGCCGGAGCCGCACGCCCAG
ACCGCGCAGCCAGCAGTGGCATCGTCGTCGCCAGCCGGGGCCGGCTTCCT
CGGTGTGGGCCACCACCACCCCTTGCATGCCGACGAACCCTCCGCGGCCA
CGGCGGGAGGGGGCCCGGTGGGCTTCGCGTCAAGCATCGTGGTGGGAGGG
GGAAGGGGCGGCGCCCTGCCCAGCGGCAGCTCCTCCATCCAGCCCTTCCC
GCTGGAGGACCAGAGCCTCTACACCGGATCGGAAACGGGCGGCAGGAGCC
AACGGCAGCAGCAGCAGCAGTCGCAGCAACAACAACTGCAACAGCAGCAG
CAGCAACAACAACAACAGGAGCAGCAGCACCACCACCACCACCCCCAGAA
CCCACAACACGGGGGGGGCGGCACCACCGCTGTCAAGCCGGAGCCGCACG
CCCAGACCGCGCAGCCAGCAGTGGCATCGTCGTCGCCAGCCGGGGCCGGC
TTCCTCGGTGTGGGCCACCACCACCCCTTGCATGCCGACGAACCCTCCGC
GGCCACGGCGGGAGGGGGCCCGGTGGGCTTCGCGTCAAGCATCGTGGTGG
GAGGGGGAAGGGGC
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