mRNA_S-ischiensis_contig83.19982.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19982.1
Unique NamemRNA_S-ischiensis_contig83.19982.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19982.1 vs. uniprot
Match: A0A835ZF90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF90_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.840e-24
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 2 
Query:  206 MSDPVLARKASG-RSASPYKTDVYVDAVEAAKSTGELSVKECLRLAKELKDVSQLPASCRAYLDKQANINKAYAGMGGSQAARATQSQNSTITRGMTHAQLQRRWTSRRDPLAKKK 550
            MS+P +AR+AS  +   P  +D          +TG+L++ ECLRL+K + DV++LPASCRAY+DKQ  + KA+ G GG+ AARAT +++ST  RG+THAQLQRRWT+ RDPL  KK
Sbjct:    1 MSNPAVARRASSSQQLVPDGSD--------NDTTGKLTIGECLRLSKLIADVTELPASCRAYIDKQHAVQKAHDGAGGNMAARATIAKHSTAARGLTHAQLQRRWTTGRDPLKHKK 108
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BLAST of mRNA_S-ischiensis_contig83.19982.1 vs. uniprot
Match: D8LIN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIN1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.980e-17
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 2 
Query:  293 AKSTGELSVKECLRLAKELKDVSQLPASCRAYLDKQANINKAYAGMGGSQAARATQSQNSTITRGMTHAQLQRRWTSRRDPLAK 544
            A S  ++S +EC++LAKELK+VS+LP SCR YLDK+A +++A  GM G Q A  + ++NS I R MTHAQLQRR T+R +PL K
Sbjct:   20 ADSASDVSFEECVKLAKELKEVSRLPVSCRQYLDKKAVLHQACEGMTGDQLAEVSVARNSKIGRNMTHAQLQRRLTARENPLRK 103
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BLAST of mRNA_S-ischiensis_contig83.19982.1 vs. uniprot
Match: A0A4D9D738_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D738_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.920e-6
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 2 
Query:  206 MSDPVLARKASGRSASPYKTDVYVDAVEAAKSTGELSVKECLRLAKELKDVSQLPASCRAYLDKQANINKAYAGMGGSQAAR-ATQSQNSTITRGMTHAQLQRRWTSRRDPLAK 544
            MSD  L+RK S  S  PY  + Y    E     G+ +  +CLRLAK L D+SQ+PA C+  +  +  + KA+ G   +  AR A  ++  TI+    H QLQRR TS  + +A+
Sbjct:    1 MSDAKLSRKLSRTSDEPYLYESYSKDNE----DGKYTKTDCLRLAKTLTDLSQVPAPCKEVVQNEQAMRKAFEGATVTDRARHAIAARKGTIS----HHQLQRRLTSTSETMAR 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZF90_9STRA7.840e-2452.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LIN1_ECTSI4.980e-1755.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D738_9STRA5.920e-637.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:227282..233288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004500.1
Exons3
Model size1674
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19982.1prot_S-ischiensis_contig83.19982.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 228403..233083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817327.9706697-UTR-S-ischiensis_contig83:227281..2284021622817327.9706697-UTR-S-ischiensis_contig83:227281..228402Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 227282..228402 -
1695741029.9859543-UTR-S-ischiensis_contig83:227281..2284021695741029.9859543-UTR-S-ischiensis_contig83:227281..228402Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 227282..228402 -
1622817328.0191386-UTR-S-ischiensis_contig83:233083..2332881622817328.0191386-UTR-S-ischiensis_contig83:233083..233288Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 233084..233288 -
1695741030.0366948-UTR-S-ischiensis_contig83:233083..2332881695741030.0366948-UTR-S-ischiensis_contig83:233083..233288Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 233084..233288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817327.984436-CDS-S-ischiensis_contig83:228402..2285131622817327.984436-CDS-S-ischiensis_contig83:228402..228513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 228403..228513 -
1695741029.9976442-CDS-S-ischiensis_contig83:228402..2285131695741029.9976442-CDS-S-ischiensis_contig83:228402..228513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 228403..228513 -
1622817327.9965942-CDS-S-ischiensis_contig83:232704..2328591622817327.9965942-CDS-S-ischiensis_contig83:232704..232859Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 232705..232859 -
1695741030.011746-CDS-S-ischiensis_contig83:232704..2328591695741030.011746-CDS-S-ischiensis_contig83:232704..232859Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 232705..232859 -
1622817328.006672-CDS-S-ischiensis_contig83:233001..2330831622817328.006672-CDS-S-ischiensis_contig83:233001..233083Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 233002..233083 -
1695741030.0247686-CDS-S-ischiensis_contig83:233001..2330831695741030.0247686-CDS-S-ischiensis_contig83:233001..233083Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 233002..233083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19982.1

>prot_S-ischiensis_contig83.19982.1 ID=prot_S-ischiensis_contig83.19982.1|Name=mRNA_S-ischiensis_contig83.19982.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
MSDPVLARKASGRSASPYKTDVYVDAVEAAKSTGELSVKECLRLAKELKD
VSQLPASCRAYLDKQANINKAYAGMGGSQAARATQSQNSTITRGMTHAQL
QRRWTSRRDPLAKKK*
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mRNA from alignment at S-ischiensis_contig83:227282..233288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19982.1 ID=mRNA_S-ischiensis_contig83.19982.1|Name=mRNA_S-ischiensis_contig83.19982.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6007bp|location=Sequence derived from alignment at S-ischiensis_contig83:227282..233288- (Schizocladia ischiensis KU_0333)
GTTGAAGGAGGAGGAGGTTGCTTTTTGCGACACAAGGGCACAGAGGGCAC
CCCACCATCCCCCCAACCCCCTCCAGGCACCCTTGGGAGGTGTGCCGGGT
TGCACAGTTGCTGGCGGGCCCAATTCATCCTTCCGAACTGGGCTTGCAGC
AACAAAAGACTCGCCTCACCTGGCCGGTTTTTTGGAAGCCCCGGTTCCAG
GCGACATGAGTGACCCAGTGCTCGCGCGCAAGGCGTCTGGGAGGTCGGCA
TCCCCGTACAAGACCGATGTCTACGTGGATGCAGTCGGTGCGTGGCATCA
TTCGCTGTTTTCCGGACGGGGCGTTTTCCCGGGCGTGCGCATTTTGGGGC
TTGTAGCGCAACATGCACCCTTTTGTGCGCGGCGAGTTTGCTGACCGTCA
CACTGCCCGCCGCCCCCTGGCCCTTTCAGAGGCTGCAAAGTCCACGGGCG
AACTGTCTGTTAAGGAGTGCCTGCGACTGGCGAAGGAGCTGAAGGACGTC
TCCCAGCTCCCGGCCTCCTGCCGCGCGTATCTTGACAAGCAGGCCAACAT
CAATAAGGCGTACGCTGGCATGGGTGGCTCGCAGGTGTGTTAAGGTTTTC
TGAGAATGCCTTGCAGTCTGCCTGGTACCCCCTAGCCTGAACACGACCCC
AGTACGGACCAAGGGCCATGATTTATGTGCTCGGTTGAGCCCTTTTGGCA
GCCGAAAAGGTACTGCACACGCATACTCGTACTGAGAAACCTTTGCGTGC
GCCATGAGACGGAAAGAGAGCCGCGGGGAATAGCGTGGGAACCATATGGT
AGGTGTCTGCAACGAGCCCCCGCCGCTCTTGTCTTATCTCCGCCGGGTAT
TTTCTCGCGTACCCTAAATACATGCTTGTGCGCGTCTTTTATGTTTGAGC
GAATTTTTTTGCCCAGCTCGGGCCTCTTTTCGGGGCAAGAAAGACTGCGG
ACCTAGAACTGCTCGGGGGGGGGGGGAAGCGAGTGGGTTGCAGTGGAGCT
TGGGGGCAGAGAGAAACAACGGGTGGCATCGAAACAATGGCAGGATATTT
TTTGTTGCCTTGGAAATGCGCGTCCAAGCTGGTCCTGGCCTCCAGGGGCT
TGAACCAGCAGGTCGCAGTGAGAGAGCCCTTGGCACACACCTAGTACCGG
AATCGTCGGAGAGCCCTTGCGTGCAAAATGTATGAAACGGGCGTCGAGTT
TACTGCATCAACTTCGGAAGGCAACACCTCTCCGCATGCAACAGCTCTAG
GTTCATTGGCCCGTCGGGGCCCGAGTTTGCTACGCCATCTTCCCGAGGGC
AAAACGCCTCCACCAAGCAAAACCCTCGGGCGATGATCGGCACGTTGGGG
GGTGTATTTCAAATGTATCGGAGGGCAAACCCGAAGTTTCGACTTGGGGC
TGTCGGCATTGCGCGCACAGTTATGTCGCAAGACAAGCCAATGAGTACAT
ATATATATATATTTCAAAGCGGCAATGGTGGATCCGGGGGGGCAAGCGGG
CACCAAGCACCCTGCCCCATGGCCGTTTGAGCTCACGTACAACAGGGGAG
GCAAGCTGCAAGAACAGAACATTCACAATCGACACGAAAATGGCCTCATC
GTCGTACTTGTTGCCCAGGCCCGGGGGGGGGCAAAATATACGAAAGAAAA
AAATGGGCGGAGGGCCCATAACCGCTACGACGTGCAAAACCGCTAAATTC
CACGAAGAAAATGCCTTTTGAACAGTGCTTAAAACGGCAAAGATGCGCAA
AAGCGACAAGGCCCGCAAGGTCTCTCTGACGATTTAAGGTATATTGTACT
TGGAAGTATATATGTATACTCGAGTATGTACTCACGTGGTGTTTGCCGTA
GTCCCGAGAGCATTGACCCCGCGCCTTGTTCGAGGCAGAGCAGGATATGC
AAGTATGTATGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGTCGAAAC
TTCGGGTTTGCGGCATTGCACGCAAGGTTATGTCGCAAGACAAGCCCATG
AGTACATACTACGTGCTGTAGTATATACGTACGAGTATATATGTATTCAC
GTCTAACAGAGCTAGCCGTAGTCACGAGAATGCTGATCCCGTACCTCGAC
CGAAACGGAGCATATATATATATGTGTATATATATATCATATATACATAT
ATACATACTCGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGAC
CACGCGCCTCGTACTGACTGGTTTATTTGAAGCGTACCCTCCCGACTACC
GGGATGTTTAAGAAAACAAAAGTTAAAAAAAAAGGCCCGTAGGGACTTGC
TCACGGCAAGCTCATCACAGCGTGGCTACTGGAGCTACTGTGCACTAGTT
TATGTGCACAGCGTATGCTATAGCTGGCTTGGGAAATCCATACAATAGCG
TCTGAGAGCAATTGGCGCGGCATTGAAACTGCAAGCACGTGTGAGTACGT
ATATATATGTACTCATGTGGTGCTTGCCGTAGTCCTGAGACCATTGACCC
CGCGCCTCGTGCGAGGCGGAATATATGTATATATATATATACTGAAGCGC
GTGCGTCTATAGTAGGCATTTTCTTCAAGCACATTAGCTTGGCCTGCACG
GCGAACCTCGAATATATTGGGGCCCCCGCCATGCACGCAGCGGCGACGTC
GATAGACATGGCCGGCGTTGGCACTTAACCCCTAGGTGGTGCCCTTTTAG
GCGCTGCACTAGAGGTAGTTCCGGTTAATTAGACCTTAAATGAAGGCTAG
TTTGGCCCTAGTTAACCTCTAAGTGCCAGCCCTGGACAGGGCGCCTTCCA
CTCCATGAGAGACTCCGGGCTGTGGGCGTTAATTGGGGGTAGCTAGACCT
AAAACAAAGGCTAATTAAGCCCTAATTAACCTGTATGTGCCAACCCTGGA
CAGGGCGCCTTCCGCTCCATGGGAGACTCCGGGTTGTGGGCGGCCAACAC
ACGCGGCAGCCTTGTCAGAACACGCCTCCCACTTCACTAGAGAACTCCGT
CGTGTCGGCCATGCGCACGCGCTGCGGCGGCCGTATTCCATCGAAAGACG
CCTCCCAGTTCGCGAGTACTTCGCACAGTATTTATAGTTATGCGACTGTG
CTGTACTGTGCGCATTGCTAGTAATTAACTAGCAAGGATAAGCCACGGGC
TTTGCCGTTTTCCTACGGGCTTAGCGCAGGTAAAACCCCGTGGGGGTCCA
ACCGCGACGAGATAGCGCCCGCCACTTGTCAACGAAGTGGCCCGTGGTAT
CAGCTTCCAATCGGTACCGTCAGATATCAAATCGAATATCGGAATCGACA
TGGGAAGCATCCAAAGCCGTCGGCCCACGGGAAAAATCGAACGGCCCTGG
GACCACGGTCCTAACAAGCTTCGGGAGCTAGCATCCGATGTAGGCCGTCC
CGGCGTTCGATGAAATACGATTCTGAAAGAGCTCGATTTGCTCGGTATCC
ACATACTCACAAGCCGGCACGATTCCGGACGTACGATTCGCGCACAAATC
CTGCAGACTTTATTAGCCGGTAACGGGCGGCCCGTGTCTATCCTTGGTAG
TTAGGTTAGGTATGCTTCTCCGTGTCGACCGAGGCGTGTGGTCAATGGTC
TCGGGACTACGGCAAGCACAACGTGAGTACATATATATAATGAGCACGTG
TATGTGCCCATTTCTCTCGTTGGGTGCCGCCGGGCCTCGTGGAGACATTT
GCTCGATGGCACTCCCTTTCGCGGGGAGGAGAAGTCTGGCCGGAGGTCAT
GTCCGTGTGTGTTGCAACGCCGTACATATGTAGGCACGTACGTGTTTGTC
TTTCCATGAGTACAGTACGGGAAGGAGCAAAGACGAGGATCGTTCGGGTA
CAGGGCATGCGCAGAGACGTGAGCGAGTAAACTCAGTGTTCGTACATTGT
ACCCACTCTACCTTTATCGTCTGTACTCCACTATATATTTGTACAGTCAG
GTGGCCGCTTTCTCCCGCAAAAATAGGCGTTTCACGAACATAGGCGCAAG
AAAGATGTATGGGTTGCACTGCTTCCTGCCCGTGATAGCCAACCCTCCGG
CTTTGCTCGCCTGATCAAGGGACAATGGCAGAAGAGCCGTTATCCCGGGG
GCCCAATGGCGAGCCGCGGATTGGTGTGCACCCATCGCCTGGCCAGTGAG
AACCCGGTATGCTCCGTCCCGGCGAAATTGTGGGGACGCGTGGCCAATGG
GCGAAAGGCTACCCTGCGGGGGCTGGCCGGCGGTCCGGCAAGTAGTATGC
TGCTGTCATGTGATATATACTCTAGTGTACAGTAGTTTGACATCACATCA
CATCTCATCATCACATCAAAGTCCGGCAAGTAGTATCCTGGGCCGGCGGT
CGGTGGCATGCACGGGATGGGGTGATCATAACCCTGTCCAACGTGAGTAC
ACACACACAGTACAGTACCTTGCGGTGCTCGTAGTACAGTAACAATCATA
CTGAACACTATTTCCAAGTATGCAAGCACTGCAGCGCGCGAACATACCTT
CAGCGCGTGTGTTCCCCCACCCCTCCCCCATGGCCCCCCCTCCCCACTCC
CCCCCTCCATCTCCCCCTTCCGTGCCTCCTGCTGTTTCCCCCATCCCCCA
TCCAGTGATGGAGTATCTAAGCAAATCAACCTATTTATCGACAGCGCTAA
TCTCTGTATCTATCGATAGTCGATATTCGATAGTTTGACCGACACTAAAT
CCACGTACAGTAGTTAGTAACGCCACCCACAAAATCAGTCGAGCCCGACA
ATTGTCCCCCATCCCCCATCTGCAGGCGGCCCGGGCAACCCAGTCACAGA
ACAGCACCATCACGCGGGGGATGACCCACGCGCAGCTGCAGCGGCGGTGG
ACCTCCAGGAGGGACCCCCTGGCCAAGAAGAAATGAAGTGAGGGGACAGA
GCTCCCCTCACTGGGCAAGCGGGCGGTGATCGCGGCGGCCAAGACAGCTG
CCTGTTCGCCCGCCCACCCCTGGGCGGGCGAGCCCGCGTCGGCCAGCCCG
GGCTCCGCCGCCTGGCCCCATGCCCCCTCCTCCCCCCACCATGGCACATA
GTTCCCCCGTGGGCGGGCGGGAGGGTTCCCCCCTACCGCCCGTTTCATCG
CTCAGAGGCGCCCGCCTGCCTGCTGCCGCCGCCGCCGCCACGCACCTGTC
CACCGTTTATTGCCGGCCCTATCCCCGCCCCAGCCGCAGAGGCCCACAGC
CGGTCTGCCCTGGCCCGTGGCTGTTTACAGTTTGTATGCACGTGGGGTGG
GCCGGGGGGGCGATTCCCCCGCAGGGGGGGAGGGGGTTGCGCCGACTTTC
GGTTGGAGCGGGCGGCGCCCTTGACTGACAAGCAGGCGTCCATTGTCTCG
GGCCAGGGAGCTTGGTGCCCGCCCGTGGCGGGTGGCAGGCAGGCGCCCGG
AATCTGTTGCCCCTGCAGCCGCCGCCGCCCCTGCCGCTGCAGGCTCTCTG
GCGATTGAGGCGATGGGGCAGGATGGCAGGATCGCGCCGCAGCTCTGCAT
GTCTGTGTGGCCTGGGCACTGTTGCCGTCTCTCGCTGCTGGTGCTGCTGC
TGCTGCTGCTGCTGCCGCCGGCGGTGGGCCTTGGAAGCCCTAACCCTGGG
GTGACAGGGTCGGCAAGGGCGGTCAGCCGATGGCTGCAAGCGGCGTTGCT
TGGCCGGGCCGAGGCCTGCCCCCAGCCTCGCATGCCACCCCCACCCACTG
TGTGCGTGAGCAGATAGCGTCACTCGTTGCCTTGCAGCTGATGGCAAGTC
TCCTTGCTCTTGGATTTGTACCTGCTGTACGGTAGAATATTTCCGCGCCC
CAGGGGGAGGGGAGGGGACGGAGAGCGCGAGTTCTGGCGCAGCCTGCAGC
GATTCCCGTGATCCTTCCCGGCCCCGAACCCTCCCTGGGCCGCCGCGATC
GAATGCCGTGCCGGCATGCCTGAATTATGGGGTTACGGAGCAGCTTTCTT
ATGACTGTACTATATGCCACAGGCAGTGCTGTTGGGGCATGTCGCAGGCG
TTTCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:227282..233288-

>mRNA_S-ischiensis_contig83.19982.1 ID=mRNA_S-ischiensis_contig83.19982.1|Name=mRNA_S-ischiensis_contig83.19982.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=696bp|location=Sequence derived from alignment at S-ischiensis_contig83:227282..233288- (Schizocladia ischiensis KU_0333)
ATGAGTGACCCAGTGCTCGCGCGCAAGGCGTCTGGGAGGTCGGCATCCCC
GTACAAGACCGATGTCTACGTGGATGCAGTCGATGAGTGACCCAGTGCTC
GCGCGCAAGGCGTCTGGGAGGTCGGCATCCCCGTACAAGACCGATGTCTA
CGTGGATGCAGTCGAGGCTGCAAAGTCCACGGGCGAACTGTCTGTTAAGG
AGTGCCTGCGACTGGCGAAGGAGCTGAAGGACGTCTCCCAGCTCCCGGCC
TCCTGCCGCGCGTATCTTGACAAGCAGGCCAACATCAATAAGGCGTACGC
TGGCATGGGTGGCTCGCAGAGGCTGCAAAGTCCACGGGCGAACTGTCTGT
TAAGGAGTGCCTGCGACTGGCGAAGGAGCTGAAGGACGTCTCCCAGCTCC
CGGCCTCCTGCCGCGCGTATCTTGACAAGCAGGCCAACATCAATAAGGCG
TACGCTGGCATGGGTGGCTCGCAGGCGGCCCGGGCAACCCAGTCACAGAA
CAGCACCATCACGCGGGGGATGACCCACGCGCAGCTGCAGCGGCGGTGGA
CCTCCAGGAGGGACCCCCTGGCCAAGAAGAAATGAGCGGCCCGGGCAACC
CAGTCACAGAACAGCACCATCACGCGGGGGATGACCCACGCGCAGCTGCA
GCGGCGGTGGACCTCCAGGAGGGACCCCCTGGCCAAGAAGAAATGA
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