mRNA_S-ischiensis_contig83.19978.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19978.1
Unique NamemRNA_S-ischiensis_contig83.19978.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19978.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 9.960e-10
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:   31 VLVTTAVVQHLRRKSRGRASLD--ASAGGAIGGPLRITLEDLEGVSPATSPTLNLGGT-AGAAGLAQPGGGLGTGLVAVGSKGAWFNREKLRWEGFEEPDMSGFTLSDGST 354
            +  T+  V+H+R+++R R  L+  A AG  + GP++ITLEDL+        +L  GG  AG+A    PG        +  + GA FNR K+ WEGFEEPD++GF  +D  +
Sbjct: 1107 MTATSIAVEHVRKRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDRMSLGAGGEDAGSAKSISPG--------STAAAGARFNRRKMCWEGFEEPDLTGFDTTDSES 1209
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZY2_ECTSI9.960e-1038.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:214998..217129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size759
Cds size756
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19978.1prot_S-ischiensis_contig83.19978.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 214998..217127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.1378896-CDS-S-ischiensis_contig83:214997..2151531622817324.1378896-CDS-S-ischiensis_contig83:214997..215153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 214998..215153 +
1695741027.2692053-CDS-S-ischiensis_contig83:214997..2151531695741027.2692053-CDS-S-ischiensis_contig83:214997..215153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 214998..215153 +
1622817324.1501184-CDS-S-ischiensis_contig83:216167..2163141622817324.1501184-CDS-S-ischiensis_contig83:216167..216314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 216168..216314 +
1695741027.2806902-CDS-S-ischiensis_contig83:216167..2163141695741027.2806902-CDS-S-ischiensis_contig83:216167..216314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 216168..216314 +
1622817324.1639829-CDS-S-ischiensis_contig83:216674..2171271622817324.1639829-CDS-S-ischiensis_contig83:216674..217127Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 216675..217127 +
1695741027.2905712-CDS-S-ischiensis_contig83:216674..2171271695741027.2905712-CDS-S-ischiensis_contig83:216674..217127Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 216675..217127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19978.1

>prot_S-ischiensis_contig83.19978.1 ID=prot_S-ischiensis_contig83.19978.1|Name=mRNA_S-ischiensis_contig83.19978.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=252bp
GDGAVSEGEGVLVTTAVVQHLRRKSRGRASLDASAGGAIGGPLRITLEDL
EGVSPATSPTLNLGGTAGAAGLAQPGGGLGTGLVAVGSKGAWFNREKLRW
EGFEEPDMSGFTLSDGSTSPTGGASPKPFGGDAPPPGPAAAAGTAQADEA
ELCKEGRTEDEGEKVAPAAAAAAAAAAASGGQEKEKEKEEDEDGEESDWD
ADAELAAAAAAAGPGCDGPGPAPSAPLLLAGLLASSSSRPAVGLAPAGQA
VR
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mRNA from alignment at S-ischiensis_contig83:214998..217129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19978.1 ID=mRNA_S-ischiensis_contig83.19978.1|Name=mRNA_S-ischiensis_contig83.19978.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2132bp|location=Sequence derived from alignment at S-ischiensis_contig83:214998..217129+ (Schizocladia ischiensis KU_0333)
GGCGACGGGGCCGTGAGCGAGGGCGAGGGTGTGCTGGTGACGACGGCTGT
GGTGCAGCACCTGCGGCGCAAGAGCCGGGGGCGGGCCAGCTTGGATGCCT
CCGCGGGGGGTGCCATCGGAGGCCCGCTGCGCATCACGCTGGAGGACCTG
GAAGGGGTGAGCTTGCTGCTTCGTAGAAATGGTATTGTCTTTTTTATCGT
CATTATCACGGTTGTTCTTGTTGTTGTTATACTGCTCCGTCTCGAACGAG
GCCCGTGGTCAATGGTCTCGGGATTACGGCTAGCACCACATGAGTACGTA
GAGCTATATATATTGTGTGTTTGTACGAGTACTGTCACCGTTAACTTGCA
GGTGGTTTGGGCCAGGATCGGCAAAAAAAATTGATCTTGGCGAATTGAGT
GAGTTCGGCCATTGATGCAGTCCGCCATGGTCTAGAGTAGTACCGATTCT
AGCCCATCTCATGAGCTTCCATTGCACCATCGCAGACCTTGTGCCTCTTG
GTGGTTGGCGAGTTGTGGGGCCGATATGCAGGGAAAGTATCGCGGATATC
GGAATATTATCGACCAATTGCCGATTACTCGTCAACCATTGAACGGCCCA
AGATCTGCGATGGTGCAATCGAAAGCTGAAGAGATGGGCTTGAATCGTTA
TTATATCATCGAGGTCTGAATTTCTACATGTGTGAGTCTAGTGAGTGGCC
CCTCATCCAGCTTGCCGACTCCGAGGGTTCACGGCATTCCGGGCTTGGCC
AGTGCCCGGCCTGGCCGGTGCAAACCCGGCATGCTCCACCCCGGCCTTGA
AGTTGGGCGAGAGTCCATGGCTAAATAGCTACTCTACTCCTGTCGGAGGG
CGAACCTGCAGTTTCGACGTAGGGCGGTCGGCAAAATGCATGCAAGGTGA
CGTCGCAGGCCCAGTCGATAAGATCATATAAACAATAGGAAGGGCTTCCG
GGGGTGGGGCCCTGAAGTCGCGTATGTAGGTAAACCTTTTCTTTCCCACT
CGCGTGTTTGTCTTGTTGTGCAAAAATAGACTTGCAAGCATATAACAATA
CAATCGACCCACGCATCCGGGGCGTGTTTGAAAGAGAAAACTGACCAGCC
CGGGCTGCCGCCGCCGCTGCCGCTGCCGCCAACCTCCACCACGCGGCCTG
GTGGTATGGCATGTGAACAGGTATCTCCGGCAACATCCCCCACTCTTAAC
CTGGGTGGGACGGCGGGGGCCGCGGGTCTCGCACAGCCCGGGGGGGGGCT
GGGGACCGGGCTGGTGGCGGTGGGCAGCAAGGGCGCCTGGTTCAACCGGG
AGAAGCTGCGCTGGGAGGTGGTGTGATGTGATGCAGTGCGATGTGATGTG
TTGTGATGTAATGTGATGGGATGTGTTGTGTGCTCTATGGACACTATAGT
ATGGGGTGCCTGGTTCAACTGGGAGAAGCTGCGCTGGGAGGTGATGTGTG
GTATGTGATGTGATGTGTGCTCTATGTAGAACATGGTACAACAAGTGGTG
TAGTTCTGTATACTACTACTGTGCTCCCGTACGACAAGTTGTGGACGTGG
AATAACACGTCACCATACCCCTCCACGCGCCATACTGTACTACTGCAGGG
CTTTCCAGCGCGATGACTGATGCCCTACTACCTCACGTGCTGCCGCGTCC
GTCCCTCCATCCGTCCCTCAATGCCAGGGGTTTGAGGAGCCCGACATGTC
CGGCTTCACCCTAAGCGACGGCTCCACCTCCCCCACCGGCGGCGCCTCTC
CCAAACCTTTTGGCGGGGACGCCCCCCCCCCGGGCCCCGCGGCGGCCGCC
GGTACAGCCCAGGCGGATGAGGCGGAGCTTTGCAAGGAAGGGCGGACCGA
GGACGAGGGGGAGAAGGTAGCGCCGGCGGCGGCAgcgGCGGCGGCGGCCG
CCGCCGCATCCgGGGGGCAGGAGAAGGAGAAGGAGAAGGAGGAGGACGAG
GACGGAGAAGAGAGCGACTGGGATGCGGATGCAGAGCTGGCGGCGGCGGC
GGCGGCGGCAGGCCCTGGCTGCGACGGCCCGGGTCCTGCGCCGTCAGCAC
CATTGTTGCTGGCAGGGCTGTTGGCGTCTTCGTCGTCCCGCCCCGCTGTG
GGCCTGGCGCCCGCGGGGCAGGCAGTAAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:214998..217129+

>mRNA_S-ischiensis_contig83.19978.1 ID=mRNA_S-ischiensis_contig83.19978.1|Name=mRNA_S-ischiensis_contig83.19978.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1512bp|location=Sequence derived from alignment at S-ischiensis_contig83:214998..217129+ (Schizocladia ischiensis KU_0333)
GGCGACGGGGCCGTGAGCGAGGGCGAGGGTGTGCTGGTGACGACGGCTGT
GGTGCAGCACCTGCGGCGCAAGAGCCGGGGGCGGGCCAGCTTGGATGCCT
CCGCGGGGGGTGCCATCGGAGGCCCGCTGCGCATCACGCTGGAGGACCTG
GAAGGGGGCGACGGGGCCGTGAGCGAGGGCGAGGGTGTGCTGGTGACGAC
GGCTGTGGTGCAGCACCTGCGGCGCAAGAGCCGGGGGCGGGCCAGCTTGG
ATGCCTCCGCGGGGGGTGCCATCGGAGGCCCGCTGCGCATCACGCTGGAG
GACCTGGAAGGGGTATCTCCGGCAACATCCCCCACTCTTAACCTGGGTGG
GACGGCGGGGGCCGCGGGTCTCGCACAGCCCGGGGGGGGGCTGGGGACCG
GGCTGGTGGCGGTGGGCAGCAAGGGCGCCTGGTTCAACCGGGAGAAGCTG
CGCTGGGAGGTATCTCCGGCAACATCCCCCACTCTTAACCTGGGTGGGAC
GGCGGGGGCCGCGGGTCTCGCACAGCCCGGGGGGGGGCTGGGGACCGGGC
TGGTGGCGGTGGGCAGCAAGGGCGCCTGGTTCAACCGGGAGAAGCTGCGC
TGGGAGGGGTTTGAGGAGCCCGACATGTCCGGCTTCACCCTAAGCGACGG
CTCCACCTCCCCCACCGGCGGCGCCTCTCCCAAACCTTTTGGCGGGGACG
CCCCCCCCCCGGGCCCCGCGGCGGCCGCCGGTACAGCCCAGGCGGATGAG
GCGGAGCTTTGCAAGGAAGGGCGGACCGAGGACGAGGGGGAGAAGGTAGC
GCCGGCGGCGGCAgcgGCGGCGGCGGCCGCCGCCGCATCCgGGGGGCAGG
AGAAGGAGAAGGAGAAGGAGGAGGACGAGGACGGAGAAGAGAGCGACTGG
GATGCGGATGCAGAGCTGGCGGCGGCGGCGGCGGCGGCAGGCCCTGGCTG
CGACGGCCCGGGTCCTGCGCCGTCAGCACCATTGTTGCTGGCAGGGCTGT
TGGCGTCTTCGTCGTCCCGCCCCGCTGTGGGCCTGGCGCCCGCGGGGCAG
GCAGTAAGGGGGTTTGAGGAGCCCGACATGTCCGGCTTCACCCTAAGCGA
CGGCTCCACCTCCCCCACCGGCGGCGCCTCTCCCAAACCTTTTGGCGGGG
ACGCCCCCCCCCCGGGCCCCGCGGCGGCCGCCGGTACAGCCCAGGCGGAT
GAGGCGGAGCTTTGCAAGGAAGGGCGGACCGAGGACGAGGGGGAGAAGGT
AGCGCCGGCGGCGGCAgcgGCGGCGGCGGCCGCCGCCGCATCCgGGGGGC
AGGAGAAGGAGAAGGAGAAGGAGGAGGACGAGGACGGAGAAGAGAGCGAC
TGGGATGCGGATGCAGAGCTGGCGGCGGCGGCGGCGGCGGCAGGCCCTGG
CTGCGACGGCCCGGGTCCTGCGCCGTCAGCACCATTGTTGCTGGCAGGGC
TGTTGGCGTCTTCGTCGTCCCGCCCCGCTGTGGGCCTGGCGCCCGCGGGG
CAGGCAGTAAGG
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