mRNA_S-ischiensis_contig83.19971.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19971.1
Unique NamemRNA_S-ischiensis_contig83.19971.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:200928..202013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size621
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19971.1prot_S-ischiensis_contig83.19971.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 201101..202013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.8203752-UTR-S-ischiensis_contig83:200927..2011001622817323.8203752-UTR-S-ischiensis_contig83:200927..201100Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 200928..201100 +
1695741027.0838614-UTR-S-ischiensis_contig83:200927..2011001695741027.0838614-UTR-S-ischiensis_contig83:200927..201100Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 200928..201100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.8344324-CDS-S-ischiensis_contig83:201100..2013271622817323.8344324-CDS-S-ischiensis_contig83:201100..201327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 201101..201327 +
1695741027.0979524-CDS-S-ischiensis_contig83:201100..2013271695741027.0979524-CDS-S-ischiensis_contig83:201100..201327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 201101..201327 +
1622817323.8474457-CDS-S-ischiensis_contig83:201793..2020131622817323.8474457-CDS-S-ischiensis_contig83:201793..202013Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 201794..202013 +
1695741027.110771-CDS-S-ischiensis_contig83:201793..2020131695741027.110771-CDS-S-ischiensis_contig83:201793..202013Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 201794..202013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19971.1

>prot_S-ischiensis_contig83.19971.1 ID=prot_S-ischiensis_contig83.19971.1|Name=mRNA_S-ischiensis_contig83.19971.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
MLHVLKSCSSERNAHPDGQQYVRLDIPRRGRFGRFAEVRVFARSSSSVDD
AVFGEVGIVNEEGKELELLGCGRRRRYPVRKAQAFGGRGPRWSEDEHIFG
HQHPVTMSLARGRAVVLYTVPGHRLEHAEIVALYPEELPQEPDATWRGD
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mRNA from alignment at S-ischiensis_contig83:200928..202013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19971.1 ID=mRNA_S-ischiensis_contig83.19971.1|Name=mRNA_S-ischiensis_contig83.19971.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig83:200928..202013+ (Schizocladia ischiensis KU_0333)
TTAAAGCTCTCTGGAAGATGTGCGAAGAGTTGGATCACCGGTCATCGTCT
TGACCCTAAGGCCTCAACGAAGCTCCAGCGCTCGCCTCCGCGACACGGAA
GGGTTCGACGTGGACTGTTGCCGGGCACCATCCCCCCCTTGTCCGCCCCG
CTGCCAGTCCGTGTCGAGTAGTGATGCTGCACGTGTTGAAGTCGTGTTCA
TCGGAAAGGAATGCACATCCCGATGGGCAACAATACGTCCGGCTGGACAT
CCCGAGGCGAGGCCGCTTCGGAAGGTTTGCCGAGGTTCGAGTTTTCGCCA
GGTCGTCATCCAGCGTAGACGATGCGGTCTTCGGGGAAGTGGGCATTGTG
AACGAAGAGGGCAAGGAGCTGGAGTTGTTGGGGTGCGGCAGGCGGCGAAG
GTGAACCTCGTAACTAGCTGACACAAACCCGAGCAGTTCTCCACAATTCC
ACCGTCTATCGGTGGCACGCCAATTCTGAGGGGGTGGCCACATCTAGGGC
TCTCTAGTCATGGCTTGCGTCGCATTTCTGCCCTTCCGGTCTCTTGCACG
GCCGTTTCAGACAAAGTACGCCAATTGCACGGAGCTCAAGGCCTGTGAAA
CACTGCACCAGACCACGTCCCCTGCTGGATTGCACTTCTGAGACTGTCTC
GCCCTGTTCGCTCCACCCAGCAAAGAAAATACCACAATGTTGGGTTGCGG
GCAGCCAAAACATATGCATACCCATTCATGCACCAGGTGTGTTAGAGTAA
GAAATGGCAACCACGTGCCTCCCTTGCCCCCATGCACCGGTGCTCCCCAA
AACCCAACCTCCCGCGCCCCCCGGATCCCGCTACCCAAACACATGCACGG
CACACCTCGGCAACAGGTACCCCGTGCGCAAGGCACAAGCATTCGGGGGC
CGCGGGCCCCGCTGGAGCGAGGACGAACACATATTCGGGCACCAGCACCC
GGTAACCATGAGCCTTGCCCGGGGCCGGGCGGTCGTCCTATACACGGTGC
CAGGGCACCGCTTAGAGCATGCCGAAATCGTGGCGCTCTATCCGGAGGAG
CTGCCGCAAGAACCAGATGCCACGTGGCGGGGGGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:200928..202013+

>mRNA_S-ischiensis_contig83.19971.1 ID=mRNA_S-ischiensis_contig83.19971.1|Name=mRNA_S-ischiensis_contig83.19971.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig83:200928..202013+ (Schizocladia ischiensis KU_0333)
ATGCTGCACGTGTTGAAGTCGTGTTCATCGGAAAGGAATGCACATCCCGA
TGGGCAACAATACGTCCGGCTGGACATCCCGAGGCGAGGCCGCTTCGGAA
GGTTTGCCGAGGTTCGAGTTTTCGCCAGGTCGTCATCCAGCGTAGACGAT
GCGGTCTTCGGGGAAGTGGGCATTGTGAACGAAGAGGGCAAGGAGCTGGA
GTTGTTGGGGTGCGGCAGGCGGCGAAGATGCTGCACGTGTTGAAGTCGTG
TTCATCGGAAAGGAATGCACATCCCGATGGGCAACAATACGTCCGGCTGG
ACATCCCGAGGCGAGGCCGCTTCGGAAGGTTTGCCGAGGTTCGAGTTTTC
GCCAGGTCGTCATCCAGCGTAGACGATGCGGTCTTCGGGGAAGTGGGCAT
TGTGAACGAAGAGGGCAAGGAGCTGGAGTTGTTGGGGTGCGGCAGGCGGC
GAAGGTACCCCGTGCGCAAGGCACAAGCATTCGGGGGCCGCGGGCCCCGC
TGGAGCGAGGACGAACACATATTCGGGCACCAGCACCCGGTAACCATGAG
CCTTGCCCGGGGCCGGGCGGTCGTCCTATACACGGTGCCAGGGCACCGCT
TAGAGCATGCCGAAATCGTGGCGCTCTATCCGGAGGAGCTGCCGCAAGAA
CCAGATGCCACGTGGCGGGGGGACGTACCCCGTGCGCAAGGCACAAGCAT
TCGGGGGCCGCGGGCCCCGCTGGAGCGAGGACGAACACATATTCGGGCAC
CAGCACCCGGTAACCATGAGCCTTGCCCGGGGCCGGGCGGTCGTCCTATA
CACGGTGCCAGGGCACCGCTTAGAGCATGCCGAAATCGTGGCGCTCTATC
CGGAGGAGCTGCCGCAAGAACCAGATGCCACGTGGCGGGGGGAC
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