mRNA_S-ischiensis_contig83.19969.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19969.1
Unique NamemRNA_S-ischiensis_contig83.19969.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:187704..188655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size952
Cds size552
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.330168-UTR-S-ischiensis_contig83:187703..1881031622817325.330168-UTR-S-ischiensis_contig83:187703..188103Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 187704..188103 +
1695741027.926818-UTR-S-ischiensis_contig83:187703..1881031695741027.926818-UTR-S-ischiensis_contig83:187703..188103Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 187704..188103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.3444495-CDS-S-ischiensis_contig83:188103..1886551622817325.3444495-CDS-S-ischiensis_contig83:188103..188655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 188104..188655 +
1695741027.9386308-CDS-S-ischiensis_contig83:188103..1886551695741027.9386308-CDS-S-ischiensis_contig83:188103..188655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 188104..188655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19969.1prot_S-ischiensis_contig83.19969.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 188104..188655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19969.1

>prot_S-ischiensis_contig83.19969.1 ID=prot_S-ischiensis_contig83.19969.1|Name=mRNA_S-ischiensis_contig83.19969.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
MWCDMMRCDSPSKALQFDITSHITSNQRTNDKRGAVRVANDSSREPSRLT
RVQYDVMWCDKHSKVRPASSSTSHQRGERMGTEHCLPLSLEGGRYDQALN
YGSLRYYDCQTAEELAPPPGQLSGGHFSANADRIGMEVLSHMFRTKALGN
PEDSSLLFRWISRYSGTCPAGTVPQESTRRGGG*
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mRNA from alignment at S-ischiensis_contig83:187704..188655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19969.1 ID=mRNA_S-ischiensis_contig83.19969.1|Name=mRNA_S-ischiensis_contig83.19969.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=952bp|location=Sequence derived from alignment at S-ischiensis_contig83:187704..188655+ (Schizocladia ischiensis KU_0333)
GGGTCTTCGTGGGGGGGGAAAAACTGCTACACCTACGCCCAGAGGTCGGC
CGGGCTTCTTGTAAACGCCTCCCCATCTCACCTTGGAGATCTCTGAGCAG
AAGACCTCATTGCCCGCCTCATCCGCTAGGAAATACCTGCGTCCGCACCG
GCCAGGCAGAGCATTTTTTAGCAAGAACAGGCGAGGCGCGGTCCACGCCG
CTATTGTAGTGACTTCAAACCTTGTGATGTGCTGTGATGTGATGTGACTT
GCACTCTAAAGTACTGTAGTTCGACATCACATCACATCACACCACATCAC
ATCAGAGAACAAAAACAGGCGAGTCGCGGTCCCCGTCGCTAGTGCAGTGC
CTTCAACCTTGCCTTCCCTTCTCACGAGGGTACAATAAAAAAATCTTCAG
ATGTGGTGTGATATGATGCGATGTGACTCGCCCTCTAAAGCACTGCAGTT
CGACATCACATCACACATCACATCAAATCAGAGAACGAACGACAAACGAG
GTGCGGTTCGCGTTGCTAACGACTCCAGCCGTGAGCCTTCCCGTCTCACA
AGGGTACAATACGATGTGATGTGGTGCGACAAACACTCTAAAGTACGGCC
AGCAAGTAGTTCGACATCACATCAGCGGGGGGAACGCATGGGGACGGAGC
ACTGCCTCCCTCTTTCACTGGAAGGGGGGAGATATGACCAGGCCTTGAAC
TACGGTAGTCTACGGTACTATGATTGTCAGACAGCTGAAGAACTTGCCCC
CCCCCCGGGCCAACTATCGGGAGGGCATTTCTCGGCGAATGCTGATCGGA
TTGGCATGGAAGTGCTAAGTCATATGTTTCGGACAAAGGCCCTTGGGAAC
CCAGAGGATTCTTCGTTGTTGTTCCGATGGATTTCACGGTATTCCGGGAC
ATGTCCGGCGGGAACCGTTCCCCAAGAATCGACGCGGCGGGGGGGGGGGT
AA
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:187704..188655+

>mRNA_S-ischiensis_contig83.19969.1 ID=mRNA_S-ischiensis_contig83.19969.1|Name=mRNA_S-ischiensis_contig83.19969.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig83:187704..188655+ (Schizocladia ischiensis KU_0333)
ATGTGGTGTGATATGATGCGATGTGACTCGCCCTCTAAAGCACTGCAGTT
CGACATCACATCACACATCACATCAAATCAGAGAACGAACGACAAACGAG
GTGCGGTTCGCGTTGCTAACGACTCCAGCCGTGAGCCTTCCCGTCTCACA
AGGGTACAATACGATGTGATGTGGTGCGACAAACACTCTAAAGTACGGCC
AGCAAGTAGTTCGACATCACATCAGCGGGGGGAACGCATGGGGACGGAGC
ACTGCCTCCCTCTTTCACTGGAAGGGGGGAGATATGACCAGGCCTTGAAC
TACGGTAGTCTACGGTACTATGATTGTCAGACAGCTGAAGAACTTGCCCC
CCCCCCGGGCCAACTATCGGGAGGGCATTTCTCGGCGAATGCTGATCGGA
TTGGCATGGAAGTGCTAAGTCATATGTTTCGGACAAAGGCCCTTGGGAAC
CCAGAGGATTCTTCGTTGTTGTTCCGATGGATTTCACGGTATTCCGGGAC
ATGTCCGGCGGGAACCGTTCCCCAAGAATCGACGCGGCGGGGGGGGGGGT
AAATGTGGTGTGATATGATGCGATGTGACTCGCCCTCTAAAGCACTGCAG
TTCGACATCACATCACACATCACATCAAATCAGAGAACGAACGACAAACG
AGGTGCGGTTCGCGTTGCTAACGACTCCAGCCGTGAGCCTTCCCGTCTCA
CAAGGGTACAATACGATGTGATGTGGTGCGACAAACACTCTAAAGTACGG
CCAGCAAGTAGTTCGACATCACATCAGCGGGGGGAACGCATGGGGACGGA
GCACTGCCTCCCTCTTTCACTGGAAGGGGGGAGATATGACCAGGCCTTGA
ACTACGGTAGTCTACGGTACTATGATTGTCAGACAGCTGAAGAACTTGCC
CCCCCCCCGGGCCAACTATCGGGAGGGCATTTCTCGGCGAATGCTGATCG
GATTGGCATGGAAGTGCTAAGTCATATGTTTCGGACAAAGGCCCTTGGGA
ACCCAGAGGATTCTTCGTTGTTGTTCCGATGGATTTCACGGTATTCCGGG
ACATGTCCGGCGGGAACCGTTCCCCAAGAATCGACGCGGCGGGGGGGGGG
GTAA
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