mRNA_S-ischiensis_contig83.19967.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19967.1
Unique NamemRNA_S-ischiensis_contig83.19967.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:171876..172528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size627
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.2771509-UTR-S-ischiensis_contig83:171875..1719011622817325.2771509-UTR-S-ischiensis_contig83:171875..171901Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 171876..171901 +
1695741027.905993-UTR-S-ischiensis_contig83:171875..1719011695741027.905993-UTR-S-ischiensis_contig83:171875..171901Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 171876..171901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.2906466-CDS-S-ischiensis_contig83:171901..1725281622817325.2906466-CDS-S-ischiensis_contig83:171901..172528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 171902..172528 +
1695741027.9151354-CDS-S-ischiensis_contig83:171901..1725281695741027.9151354-CDS-S-ischiensis_contig83:171901..172528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 171902..172528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19967.1prot_S-ischiensis_contig83.19967.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 171902..172528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19967.1

>prot_S-ischiensis_contig83.19967.1 ID=prot_S-ischiensis_contig83.19967.1|Name=mRNA_S-ischiensis_contig83.19967.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
MCAPASRAGGHAAEAAAKGKHHHYLSSFDPASNELIPFAAEAYGALNRKA
GLLLREMATHMAGAPGAPGTDALGRSSFMHRARERISCVLQRHQSWRLLA
TASLALRARVHAAPQGGGGDGGGGGGGDGDGGGGGGGGAAGDNGVCGGGG
DGGGTAGEGSGGRDGSGGGGGDGDGGAGSGGSAAGDDGGSGGGGGGGGAA
GDGSGGRDG
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mRNA from alignment at S-ischiensis_contig83:171876..172528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19967.1 ID=mRNA_S-ischiensis_contig83.19967.1|Name=mRNA_S-ischiensis_contig83.19967.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=653bp|location=Sequence derived from alignment at S-ischiensis_contig83:171876..172528+ (Schizocladia ischiensis KU_0333)
CCATCATCCACCCTGGCAACAGGACCATGTGCGCCCCCGCCAGCCGGGCG
GGCGGGCACGCCGCGGAGGCCGCGGCGAAGGGAAAACACCACCACTATCT
GAGTTCTTTCGACCCGGCTAGCAACGAGCTCATCCCCTTCGCTGCCGAGG
CCTACGGTGCCCTGAACCGCAAGGCTGGCCTTCTCCTCCGCGAGATGGCA
ACGCACATGGCTGGTGCCCCTGGGGCCCCTGGCACCGACGCCCTGGGCCG
CTCGTCGTTCATGCACCGGGCGCGAGAGCGCATCTCGTGCGTGCTGCAAC
GCCACCAGTCTTGGCGGTTGCTCGCCACCGCATCGCTGGCGTTGCGTGCT
CGGGTGCACGCCGCCCCCCAAGGTGGCGGTGGTGACGGTGGCGGCGGCGG
CGGTGGTGATGGTGACGGCGGCGGTGGCGGCGGCGGTGGTGCTGCCGGGG
ACAACGGGGTCTGTGGAGGCGGTGGTGACGGTGGCGGCACTGCCGGGGAA
GGCAGTGGCGGCAGAGACGGTAGCGGCGGCGGCGGTGGTGATGGGGACGG
CGGCGCTGGCAGCGGCGGCAGTGCTGCCGGGGACGACGGTGGCAGCGGAG
GCGGTGGCGGTGGTGGCGGCGCTGCCGGGGACGGCAGTGGCGGCAGAGAC
GGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:171876..172528+

>mRNA_S-ischiensis_contig83.19967.1 ID=mRNA_S-ischiensis_contig83.19967.1|Name=mRNA_S-ischiensis_contig83.19967.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig83:171876..172528+ (Schizocladia ischiensis KU_0333)
ATGTGCGCCCCCGCCAGCCGGGCGGGCGGGCACGCCGCGGAGGCCGCGGC
GAAGGGAAAACACCACCACTATCTGAGTTCTTTCGACCCGGCTAGCAACG
AGCTCATCCCCTTCGCTGCCGAGGCCTACGGTGCCCTGAACCGCAAGGCT
GGCCTTCTCCTCCGCGAGATGGCAACGCACATGGCTGGTGCCCCTGGGGC
CCCTGGCACCGACGCCCTGGGCCGCTCGTCGTTCATGCACCGGGCGCGAG
AGCGCATCTCGTGCGTGCTGCAACGCCACCAGTCTTGGCGGTTGCTCGCC
ACCGCATCGCTGGCGTTGCGTGCTCGGGTGCACGCCGCCCCCCAAGGTGG
CGGTGGTGACGGTGGCGGCGGCGGCGGTGGTGATGGTGACGGCGGCGGTG
GCGGCGGCGGTGGTGCTGCCGGGGACAACGGGGTCTGTGGAGGCGGTGGT
GACGGTGGCGGCACTGCCGGGGAAGGCAGTGGCGGCAGAGACGGTAGCGG
CGGCGGCGGTGGTGATGGGGACGGCGGCGCTGGCAGCGGCGGCAGTGCTG
CCGGGGACGACGGTGGCAGCGGAGGCGGTGGCGGTGGTGGCGGCGCTGCC
GGGGACGGCAGTGGCGGCAGAGACGGTATGTGCGCCCCCGCCAGCCGGGC
GGGCGGGCACGCCGCGGAGGCCGCGGCGAAGGGAAAACACCACCACTATC
TGAGTTCTTTCGACCCGGCTAGCAACGAGCTCATCCCCTTCGCTGCCGAG
GCCTACGGTGCCCTGAACCGCAAGGCTGGCCTTCTCCTCCGCGAGATGGC
AACGCACATGGCTGGTGCCCCTGGGGCCCCTGGCACCGACGCCCTGGGCC
GCTCGTCGTTCATGCACCGGGCGCGAGAGCGCATCTCGTGCGTGCTGCAA
CGCCACCAGTCTTGGCGGTTGCTCGCCACCGCATCGCTGGCGTTGCGTGC
TCGGGTGCACGCCGCCCCCCAAGGTGGCGGTGGTGACGGTGGCGGCGGCG
GCGGTGGTGATGGTGACGGCGGCGGTGGCGGCGGCGGTGGTGCTGCCGGG
GACAACGGGGTCTGTGGAGGCGGTGGTGACGGTGGCGGCACTGCCGGGGA
AGGCAGTGGCGGCAGAGACGGTAGCGGCGGCGGCGGTGGTGATGGGGACG
GCGGCGCTGGCAGCGGCGGCAGTGCTGCCGGGGACGACGGTGGCAGCGGA
GGCGGTGGCGGTGGTGGCGGCGCTGCCGGGGACGGCAGTGGCGGCAGAGA
CGGT
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