mRNA_S-ischiensis_contig83.19966.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19966.1
Unique NamemRNA_S-ischiensis_contig83.19966.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:171305..171849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.2460341-CDS-S-ischiensis_contig83:171304..1718471622817325.2460341-CDS-S-ischiensis_contig83:171304..171847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 171305..171847 +
1695741027.8964388-CDS-S-ischiensis_contig83:171304..1718471695741027.8964388-CDS-S-ischiensis_contig83:171304..171847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 171305..171847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19966.1prot_S-ischiensis_contig83.19966.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 171305..171847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19966.1

>prot_S-ischiensis_contig83.19966.1 ID=prot_S-ischiensis_contig83.19966.1|Name=mRNA_S-ischiensis_contig83.19966.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
PPSRADKVQRRLSRLLHAGAAGDVLTQASRRINDVERERAGARLRSRMSK
GAGSWAGSKPRRPHSTFTEVVFQVMMARWLGVGDADEAMARGLLCPGVAC
RRRGQLLMWHHAEVCAQLGLQNHAHHGLVRDGLLPLLRDECHIIALREDG
SAFHDGSGKAMDVFVPQGQLHHGQEAPGPEW
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mRNA from alignment at S-ischiensis_contig83:171305..171849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19966.1 ID=mRNA_S-ischiensis_contig83.19966.1|Name=mRNA_S-ischiensis_contig83.19966.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=545bp|location=Sequence derived from alignment at S-ischiensis_contig83:171305..171849+ (Schizocladia ischiensis KU_0333)
CCACCGTCGCGGGCGGACAAGGTGCAACGCCGCCTCTCCCGCCTTCTCCA
CGCCGGGGCTGCCGGGGACGTGCTCACCCAAGCATCCCGCCGCATCAACG
ATGTCGAGCGCGAGCGAGCCGGTGCCCGCCTCCGTTCCCGAATGTCCAAG
GGGGCTGGGAGCTGGGCGGGCTCCAAGCCACGTCGTCCCCACTCCACCTT
CACCGAGGTTGTGTTCCAGGTGATGATGGCCCGGTGGCTCGGGGTTGGGG
ACGCCGACGAAGCTATGGCGCGAGGGCTCCTATGTCCGGGGGTGGCCTGC
CGCCGGCGGGGGCAGCTCCTCATGTGGCACCACGCGGAGGTTTGCGCCCA
GCTTGGCCTGCAGAACCACGCGCACCACGGGCTCGTGCGTGACGGCCTTC
TTCCCCTGCTTCGGGACGAGTGCCACATCATCGCTCTCCGGGAGGACGGT
TCGGCCTTCCACGACGGCTCGGGGAAGGCCATGGACGTCTTCGTGCCGCA
GGGCCAGCTGCACCACGGCCAGGAGGCGCCTGGACCCGAGTGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:171305..171849+

>mRNA_S-ischiensis_contig83.19966.1 ID=mRNA_S-ischiensis_contig83.19966.1|Name=mRNA_S-ischiensis_contig83.19966.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig83:171305..171849+ (Schizocladia ischiensis KU_0333)
CCACCGTCGCGGGCGGACAAGGTGCAACGCCGCCTCTCCCGCCTTCTCCA
CGCCGGGGCTGCCGGGGACGTGCTCACCCAAGCATCCCGCCGCATCAACG
ATGTCGAGCGCGAGCGAGCCGGTGCCCGCCTCCGTTCCCGAATGTCCAAG
GGGGCTGGGAGCTGGGCGGGCTCCAAGCCACGTCGTCCCCACTCCACCTT
CACCGAGGTTGTGTTCCAGGTGATGATGGCCCGGTGGCTCGGGGTTGGGG
ACGCCGACGAAGCTATGGCGCGAGGGCTCCTATGTCCGGGGGTGGCCTGC
CGCCGGCGGGGGCAGCTCCTCATGTGGCACCACGCGGAGGTTTGCGCCCA
GCTTGGCCTGCAGAACCACGCGCACCACGGGCTCGTGCGTGACGGCCTTC
TTCCCCTGCTTCGGGACGAGTGCCACATCATCGCTCTCCGGGAGGACGGT
TCGGCCTTCCACGACGGCTCGGGGAAGGCCATGGACGTCTTCGTGCCGCA
GGGCCAGCTGCACCACGGCCAGGAGGCGCCTGGACCCGAGTGGCCACCGT
CGCGGGCGGACAAGGTGCAACGCCGCCTCTCCCGCCTTCTCCACGCCGGG
GCTGCCGGGGACGTGCTCACCCAAGCATCCCGCCGCATCAACGATGTCGA
GCGCGAGCGAGCCGGTGCCCGCCTCCGTTCCCGAATGTCCAAGGGGGCTG
GGAGCTGGGCGGGCTCCAAGCCACGTCGTCCCCACTCCACCTTCACCGAG
GTTGTGTTCCAGGTGATGATGGCCCGGTGGCTCGGGGTTGGGGACGCCGA
CGAAGCTATGGCGCGAGGGCTCCTATGTCCGGGGGTGGCCTGCCGCCGGC
GGGGGCAGCTCCTCATGTGGCACCACGCGGAGGTTTGCGCCCAGCTTGGC
CTGCAGAACCACGCGCACCACGGGCTCGTGCGTGACGGCCTTCTTCCCCT
GCTTCGGGACGAGTGCCACATCATCGCTCTCCGGGAGGACGGTTCGGCCT
TCCACGACGGCTCGGGGAAGGCCATGGACGTCTTCGTGCCGCAGGGCCAG
CTGCACCACGGCCAGGAGGCGCCTGGACCCGAGTGG
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