mRNA_S-ischiensis_contig83.19963.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19963.1
Unique NamemRNA_S-ischiensis_contig83.19963.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A6H5KJ10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ10_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.320e-59
Identity = 102/147 (69.39%), Postives = 116/147 (78.91%), Query Frame = 2
Query:    5 TVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
            TV++RVA E+G        Y+VRFDDR S  T IKYMTDGVLLREAMSDP LS YS IVLDEAHERSL TD+LFGL+RR+Q +RP L+VVVMSATLD  LF  FF+DS S+HVPGR HPVD+MYA E QD +LDA L TCLQIH +E
Sbjct:  443 TVAKRVAAEVGCXXXXXXXYTVRFDDRTSKSTRIKYMTDGVLLREAMSDPLLSAYSAIVLDEAHERSLDTDILFGLVRRLQPKRPDLKVVVMSATLDVDLFRRFFRDSVSLHVPGRMHPVDIMYATEDQDDYLDACLMTCLQIHEDE 589          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A7S1DUJ4_HEMAN (RNA helicase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DUJ4_HEMAN)

HSP 1 Score: 172 bits (436), Expect = 1.120e-50
Identity = 80/145 (55.17%), Postives = 112/145 (77.24%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIH 436
             +V+RRVAEEM  ELG +VGY++RF+D    +T ++YMTDG+LLREAM+DP L +YS IVLDEAHER++ TDVLFGL++ V ++RP L+++VMSATLD   F  +F ++  V VPGRT PV++ Y  E++  +L+AA+ T +QIH
Sbjct:   91 MSVARRVAEEMDVELGQQVGYTIRFEDLTGPQTILRYMTDGMLLREAMNDPLLERYSCIVLDEAHERTVATDVLFGLVKEVVRQRPDLKLIVMSATLDAGKFQQYFNNAPRVDVPGRTFPVEIFYTQEAERDYLEAAIRTAVQIH 235          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A7S1X6I8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6I8_9CHLO)

HSP 1 Score: 175 bits (444), Expect = 1.280e-50
Identity = 83/149 (55.70%), Postives = 113/149 (75.84%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPG-LRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
              V+RRVA+EMG E+GG VGYSVRF+D+ S  T IKY+TDG+LLRE + DPRL +Y V+++DEAHER++ TDVLFGL++ V  ERP   R++VMSATLD   FL +F+ + +++V GR  PV +MY  + +D +LDAALT  +QIH +E
Sbjct:  101 IAVARRVAQEMGAEVGGLVGYSVRFEDKTSGDTRIKYLTDGMLLREVLRDPRLGRYKVVIVDEAHERTVATDVLFGLLKGVMAERPSDFRLIVMSATLDAAAFLQYFKGARAIYVQGRQFPVQLMYTPQPEDDYLDAALTAVMQIHFDE 249          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A1D6PBU1_MAIZE (Pre-mRNA-splicing factor ATP-dependent RNA helicase n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6PBU1_MAIZE)

HSP 1 Score: 176 bits (445), Expect = 1.380e-50
Identity = 84/145 (57.93%), Postives = 110/145 (75.86%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIH 436
             +VSRRVAEEM   +G  VGYS+RF+D  S +T +KY+TDG+LLREAM+DP L KY VIVLDEAHER+L TDVLFGL++ V K RP L++VVMSATL+ + F  +F D+  + VPGR HPV++ Y  E +  +L+AA+ T +QIH
Sbjct:   13 MSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSDAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIH 157          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A642VE99_9ASCO (RNA helicase n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VE99_9ASCO)

HSP 1 Score: 180 bits (457), Expect = 2.060e-50
Identity = 83/148 (56.08%), Postives = 115/148 (77.70%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
             +V++RVA+EM  +LG  VGYS+RF+D+ S +T +KYMTDG+LLREAM+DP+L +YS I+LDEAHER+L TD+L GLI++V + RP L+++VMSATLD + F  +F D+  V VPGRTHPV++ Y  E Q  +L++A+ T LQIH  E
Sbjct:  117 MSVAQRVADEMDVDLGQEVGYSIRFEDKTSSKTFLKYMTDGMLLREAMTDPQLDRYSCIILDEAHERTLATDILMGLIKQVAERRPDLKIIVMSATLDAQKFQKYFNDAPLVAVPGRTHPVEIYYTPEYQKDYLESAIRTVLQIHASE 264          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A1D2VBN0_9ASCO (YGL120Cp-like protein (Fragment) n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VBN0_9ASCO)

HSP 1 Score: 179 bits (453), Expect = 2.780e-50
Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
             +V++RVA+EM  +LG  VGYS+RF+++ SD+T +KYMTDG+LLREAM D  LS+YS I+LDEAHER+L TD+L GLI++V K RP L+++VMSATLD + F  +F D+  + VPGRTHPV++ Y  E Q  +LD+A+ T +QIH  E
Sbjct:    1 MSVAKRVADEMDVKLGEEVGYSIRFENKTSDKTILKYMTDGMLLREAMDDHDLSRYSCIILDEAHERTLATDILMGLIKQVAKRRPNLKIIVMSATLDAQKFQSYFSDAPILAVPGRTHPVEIYYTPEFQRDYLDSAIRTVIQIHATE 148          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: U9T7N3_RHIID (Helicase ATP-binding domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9T7N3_RHIID)

HSP 1 Score: 169 bits (428), Expect = 3.140e-50
Identity = 80/159 (50.31%), Postives = 115/159 (72.33%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPG-----------LRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
             +++ RV++E GT+LG +VGYSVRFDD+ S  T IKY+TDG+LLRE +SDP L KYS+++LDEAHER+++TD+LFG+++R Q+ R             L++++MSATLD + F  +F  ST + +PGR  PV + YA E Q  +LDAALTT +QIH ++
Sbjct:   37 ISLASRVSQEFGTQLGQKVGYSVRFDDKSSHSTIIKYLTDGMLLRELLSDPLLLKYSIVILDEAHERTMRTDILFGMVKRAQEIRKNKSNQEDKNYEPLKIIIMSATLDAEKFARYFNTSTILKIPGRQFPVTINYASEPQSDYLDAALTTTMQIHMDQ 195          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A6D2HYX1_9BRAS (RNA helicase n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HYX1_9BRAS)

HSP 1 Score: 179 bits (453), Expect = 3.480e-50
Identity = 86/145 (59.31%), Postives = 110/145 (75.86%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIH 436
             +VSRRV+EEM  ELG  VGY+VRFDD  S RT +KY+TDG+LLREAM DP LS+Y  IVLDEAHER+L TD+LFGL++RV   RP L++VVMSATL+T  F  +F  S  + VPGR HPV+++Y  E +  +L+AA+ T +QIH
Sbjct:   89 MSVSRRVSEEMDVELGEEVGYTVRFDDCTSPRTVLKYLTDGMLLREAMVDPLLSRYKAIVLDEAHERTLATDLLFGLVKRVLSNRPDLKLVVMSATLETDKFHKYFSGSPLIKVPGRLHPVEILYTLEPEMDYLEAAINTVIQIH 233          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A1Y3NGH3_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NGH3_PIRSE)

HSP 1 Score: 177 bits (450), Expect = 4.160e-50
Identity = 83/148 (56.08%), Postives = 115/148 (77.70%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
             +V++RV+EE+  +LG  VGYS+RF+D  SD+T +KYMTDG+LLREAM+DP L++YS I+LDEAHER+L TD+L GLI+ V K+RP L+++VMSATLD + F  +F D+  + VPGRT+PV++ Y  E +  +L+AAL T LQIH  E
Sbjct:   36 MSVAKRVSEELDVKLGEEVGYSIRFEDCTSDKTFLKYMTDGMLLREAMTDPLLTRYSAIILDEAHERTLSTDILMGLIKEVAKKRPELKIIVMSATLDAEKFQKYFDDAPLLTVPGRTYPVEIYYTSEPERDYLEAALRTALQIHTYE 183          
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A512UI32_9ASCO (RNA helicase n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UI32_9ASCO)

HSP 1 Score: 176 bits (447), Expect = 6.120e-50
Identity = 82/148 (55.41%), Postives = 112/148 (75.68%), Query Frame = 2
Query:    2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
             +V++RVA+EM  ELG  VGYS+RF+++ S +T +KYMTDG+LLREAM D  LS+YS I+LDEAHER+L TD+L GL+++V   RP L++++MSATLD + F  +F D+  + VPGRTHPV++ Y  E Q  +LDAA+ T LQIH  E
Sbjct:  154 MSVAKRVADEMDVELGEEVGYSIRFENKTSAKTILKYMTDGMLLREAMEDHNLSRYSCIILDEAHERTLSTDILMGLLKQVTLRRPDLKIIIMSATLDAEKFQSYFNDAPLLAVPGRTHPVEIYYTPEYQKDYLDAAIRTVLQIHATE 301          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ10_9PHAE3.320e-5969.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1DUJ4_HEMAN1.120e-5055.17RNA helicase (Fragment) n=1 Tax=Hemiselmis anderse... [more]
A0A7S1X6I8_9CHLO1.280e-5055.70Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1D6PBU1_MAIZE1.380e-5057.93Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A642VE99_9ASCO2.060e-5056.08RNA helicase n=1 Tax=Trichomonascus ciferrii TaxID... [more]
A0A1D2VBN0_9ASCO2.780e-5056.08YGL120Cp-like protein (Fragment) n=1 Tax=Ascoidea ... [more]
U9T7N3_RHIID3.140e-5050.31Helicase ATP-binding domain-containing protein n=1... [more]
A0A6D2HYX1_9BRAS3.480e-5059.31RNA helicase n=2 Tax=Microthlaspi erraticum TaxID=... [more]
A0A1Y3NGH3_PIRSE4.160e-5056.08Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]
A0A512UI32_9ASCO6.120e-5055.41RNA helicase n=1 Tax=Metschnikowia sp. JCM 33374 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:148729..150870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score169.1
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog72019.SARC_07950T0
Preferred nameDHX33
KEGG rclassRC00063
KEGG koko:K00759,ko:K12818,ko:K14781,ko:K17820
KEGG ReactionR00190,R01229,R04378
KEGG Pathwayko00230,ko01100,ko03040,ko04621,map00230,map01100,map03040,map04621
GOsGO:0000166,GO:0000182,GO:0000462,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022613,GO:0023051,GO:0023056,GO:0030490,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032479,GO:0032481,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033613,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0042325,GO:0042327,GO:0042623,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043408,GO:0043410,GO:0043565,GO:0043603,GO:0043604,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045937,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0060255,GO:0061702,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0072559,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1900225,GO:1900227,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.helicase activity
EggNOG OGs38GIR@33154,COG1643@1,KOG0922@2759
EC2.4.2.7,3.6.4.13
COG Functional cat.A
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03041,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelicase, C-terminal
Ec32 orthologEc-22_003680.1
Exons5
Model size446
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19963.1prot_S-ischiensis_contig83.19963.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 148729..150839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817327.3642423-CDS-S-ischiensis_contig83:148728..1487821622817327.3642423-CDS-S-ischiensis_contig83:148728..148782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 148729..148782 -
1695741029.455067-CDS-S-ischiensis_contig83:148728..1487821695741029.455067-CDS-S-ischiensis_contig83:148728..148782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 148729..148782 -
1622817327.3771389-CDS-S-ischiensis_contig83:149108..1491771622817327.3771389-CDS-S-ischiensis_contig83:149108..149177Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 149109..149177 -
1695741029.471483-CDS-S-ischiensis_contig83:149108..1491771695741029.471483-CDS-S-ischiensis_contig83:149108..149177Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 149109..149177 -
1622817327.3896852-CDS-S-ischiensis_contig83:149607..1497391622817327.3896852-CDS-S-ischiensis_contig83:149607..149739Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 149608..149739 -
1695741029.4832017-CDS-S-ischiensis_contig83:149607..1497391695741029.4832017-CDS-S-ischiensis_contig83:149607..149739Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 149608..149739 -
1622817327.4024613-CDS-S-ischiensis_contig83:150072..1501661622817327.4024613-CDS-S-ischiensis_contig83:150072..150166Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 150073..150166 -
1695741029.495664-CDS-S-ischiensis_contig83:150072..1501661695741029.495664-CDS-S-ischiensis_contig83:150072..150166Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 150073..150166 -
1622817327.4130938-CDS-S-ischiensis_contig83:150774..1508391622817327.4130938-CDS-S-ischiensis_contig83:150774..150839Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 150775..150839 -
1695741029.509285-CDS-S-ischiensis_contig83:150774..1508391695741029.509285-CDS-S-ischiensis_contig83:150774..150839Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 150775..150839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817327.4248104-UTR-S-ischiensis_contig83:150839..1508701622817327.4248104-UTR-S-ischiensis_contig83:150839..150870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 150840..150870 -
1695741029.52237-UTR-S-ischiensis_contig83:150839..1508701695741029.52237-UTR-S-ischiensis_contig83:150839..150870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 150840..150870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19963.1

>prot_S-ischiensis_contig83.19963.1 ID=prot_S-ischiensis_contig83.19963.1|Name=mRNA_S-ischiensis_contig83.19963.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
MGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIV
LDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDST
SVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE
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mRNA from alignment at S-ischiensis_contig83:148729..150870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19963.1 ID=mRNA_S-ischiensis_contig83.19963.1|Name=mRNA_S-ischiensis_contig83.19963.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2142bp|location=Sequence derived from alignment at S-ischiensis_contig83:148729..150870- (Schizocladia ischiensis KU_0333)
ATTCACGGTGTCGCGGCGGGTGGCGGAGGAGATGGGGACTGAGCTGGGCG GCCGTGTGGGGTACAGCGTGCGCTTCGACGACCGCTGCAGTGATAGGTGG GTGGTGGCGGCGGCGGCGGCGGCGGCAGAGAGTGGAGTCTGTGTTGTCGT AGGAGTGCCGTAGCCAGTCGCTGACACTTGCCGCGATGTGCGCTTTCCGA TACGCGTGTGGTTTGTAGGGCGCGTGGGCTTGCTGCACGACCTTTGGTGA TGGCGGCTGCGGGCAGGCGCACGCGTCAGGCAGCGATGAAATGTATACAC ACCGCGTCCTCCTCCTCCTATTCACTTGTCTCCTGTGCTCTCACTGCCCC ACCCCCTCTCCCCCCACCCGCTTTCTCTCCCCCCCTCCCTCCCCCCCCCC CCTTCCCCACCTCTCTCTCTCATACACGCTCTCTCTCCCCCCCCTTCTCT CTCCCCCCCCCCCCCGTCTCTCTCTCACACACATTCCCTCTCTTTCTCTT CCCCCCCCCCGCTGTCTCTCTGTGTTTCCCTCTCACACACATTCTCTCCC TCTACCCGTGTCTCTCTGTCTCTCTCTCTCCCCCCCTCCCTCACCCCCCC TGTCTCTCTCTCATACACACTCTCTCGCACACACTTTCTCTCCCTCTACC CGTGTCCTCTCTGTCTCTCTCCCCCTCTCTTCCTCTCTTTGTCTCCTCCC GCAGGACCGCCATCAAGTACATGACGGACGGTGTGTTGCTTCGCGAGGCC ATGAGTGACCCCCGCCTCTCCAAGTACTCGGTCATCGTGCTCGATGAGGT ATGTCATGTGATGCCATGAGATATACACACGACAGTGCTGCGGTTTGACA TCACATCACACTACGGCATACCAGCCGGGTGTGTGTGTATGTGTGTGTGT ACTTGTGCCAATGGTCTCGGGACTGCGGCAAGCACAACTGAGTACTTCGA AGTATATATACACTCGTACGAGTGCATACTTACATACCTCAAAGTATATA TATACGAGTACATTATCACGTCACACCACACCACACCACACCACATCACA TCTCACCGTCACACCACATCGCTGGGCCTGGTGCCGCTGTTCGCCTACGA CAATACTTGTGCTGCCCTCGACACGACCCAGGCCCACGAGCGGAGCCTCC AGACGGACGTCCTGTTTGGCCTCATCCGCCGGGTGCAGAAGGAGCGGCCC GGGCTAAGGGTGGTGGTAATGTCCGCCACTCTGGACACCAAGCTCTTCCT TGACTTCTTTCAGGTACTTTGAAGTACGAAGTACTTGGGACTGAAAAAGG TCTGCGGCACGAGTGGGAATGATATTGTACTACGTGTATGTCGGTGATGT GCTCGAGCGCAGACAATATGAAGTGAAACTGTGTACTTCCGGAAGTATTA GAGTGTCTATACTACGAGTGTGTACATACACTAGTTGAGGTGTGTGTGCG TGTGTGGTGGTCATGTCCGATTTCAACCATCTAGTTCAGCTCCACACATA TATCGGAAACCCTATCACAGTACCTAAGAAGGGTAATCTTTGAAGCACAG TAGATTTCGTCGACGTCCGTGGCTGGAAGTACAGCACATTTGGATCGACA GACCGCTTGTATGCCGATAGTCGAGTGGGTGTGCATCACAGTGGGTACCT ATGTCTGCCCTGCACCACACCAAGCCACACTTACCCCCTGCAGGACTCAA CGAGTGTGCACGTGCCTGGCCGCACCCACCCCGTTGACGTCATGTACGCC TTCGAGAGCCAGGTGTGTGCAAACATGCCAGGCATGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGCGCGCGCGCGCGCCTATATGTGCACGCACACGTG TGCGCCGATAATCATGGGCGCGCAAAGCTTGTGTGTGCTCTCGAGCCACG TGTTGGCAGTGCTTTCTTTGAGGTCCTGGCACAGATGGCATATCTCTGTC TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCGCTTTCGC TCTCGGCCTCGTCTGACCACCCCCCTCTCTCCCCGTCCCGCTGCGTGTAC ACGTATGCCCCCCACCCCCCCCCCCCTTCCTTCAAAAGGATGCATTTCTG GACGCTGCCCTCACCACCTGCCTGCAGATCCACGGGGAGGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:148729..150870-

>mRNA_S-ischiensis_contig83.19963.1 ID=mRNA_S-ischiensis_contig83.19963.1|Name=mRNA_S-ischiensis_contig83.19963.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig83:148729..150870- (Schizocladia ischiensis KU_0333)
ATGGGGACTGAGCTGGGCGGCCGTGTGGGGTACAGCGTGCGCTTCGACGA
CCGCTGCAGTGATAGATGGGGACTGAGCTGGGCGGCCGTGTGGGGTACAG
CGTGCGCTTCGACGACCGCTGCAGTGATAGGACCGCCATCAAGTACATGA
CGGACGGTGTGTTGCTTCGCGAGGCCATGAGTGACCCCCGCCTCTCCAAG
TACTCGGTCATCGTGCTCGATGAGGACCGCCATCAAGTACATGACGGACG
GTGTGTTGCTTCGCGAGGCCATGAGTGACCCCCGCCTCTCCAAGTACTCG
GTCATCGTGCTCGATGAGGCCCACGAGCGGAGCCTCCAGACGGACGTCCT
GTTTGGCCTCATCCGCCGGGTGCAGAAGGAGCGGCCCGGGCTAAGGGTGG
TGGTAATGTCCGCCACTCTGGACACCAAGCTCTTCCTTGACTTCTTTCAG
GCCCACGAGCGGAGCCTCCAGACGGACGTCCTGTTTGGCCTCATCCGCCG
GGTGCAGAAGGAGCGGCCCGGGCTAAGGGTGGTGGTAATGTCCGCCACTC
TGGACACCAAGCTCTTCCTTGACTTCTTTCAGGACTCAACGAGTGTGCAC
GTGCCTGGCCGCACCCACCCCGTTGACGTCATGTACGCCTTCGAGAGCCA
GGACTCAACGAGTGTGCACGTGCCTGGCCGCACCCACCCCGTTGACGTCA
TGTACGCCTTCGAGAGCCAGGATGCATTTCTGGACGCTGCCCTCACCACC
TGCCTGCAGATCCACGGGGAGGAAGATGCATTTCTGGACGCTGCCCTCAC
CACCTGCCTGCAGATCCACGGGGAGGAA
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