mRNA_S-ischiensis_contig83.19963.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A6H5KJ10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ10_9PHAE) HSP 1 Score: 205 bits (521), Expect = 3.320e-59 Identity = 102/147 (69.39%), Postives = 116/147 (78.91%), Query Frame = 2
Query: 5 TVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
TV++RVA E+G Y+VRFDDR S T IKYMTDGVLLREAMSDP LS YS IVLDEAHERSL TD+LFGL+RR+Q +RP L+VVVMSATLD LF FF+DS S+HVPGR HPVD+MYA E QD +LDA L TCLQIH +E
Sbjct: 443 TVAKRVAAEVGCXXXXXXXYTVRFDDRTSKSTRIKYMTDGVLLREAMSDPLLSAYSAIVLDEAHERSLDTDILFGLVRRLQPKRPDLKVVVMSATLDVDLFRRFFRDSVSLHVPGRMHPVDIMYATEDQDDYLDACLMTCLQIHEDE 589
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A7S1DUJ4_HEMAN (RNA helicase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DUJ4_HEMAN) HSP 1 Score: 172 bits (436), Expect = 1.120e-50 Identity = 80/145 (55.17%), Postives = 112/145 (77.24%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIH 436
+V+RRVAEEM ELG +VGY++RF+D +T ++YMTDG+LLREAM+DP L +YS IVLDEAHER++ TDVLFGL++ V ++RP L+++VMSATLD F +F ++ V VPGRT PV++ Y E++ +L+AA+ T +QIH
Sbjct: 91 MSVARRVAEEMDVELGQQVGYTIRFEDLTGPQTILRYMTDGMLLREAMNDPLLERYSCIVLDEAHERTVATDVLFGLVKEVVRQRPDLKLIVMSATLDAGKFQQYFNNAPRVDVPGRTFPVEIFYTQEAERDYLEAAIRTAVQIH 235
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A7S1X6I8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6I8_9CHLO) HSP 1 Score: 175 bits (444), Expect = 1.280e-50 Identity = 83/149 (55.70%), Postives = 113/149 (75.84%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPG-LRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
V+RRVA+EMG E+GG VGYSVRF+D+ S T IKY+TDG+LLRE + DPRL +Y V+++DEAHER++ TDVLFGL++ V ERP R++VMSATLD FL +F+ + +++V GR PV +MY + +D +LDAALT +QIH +E
Sbjct: 101 IAVARRVAQEMGAEVGGLVGYSVRFEDKTSGDTRIKYLTDGMLLREVLRDPRLGRYKVVIVDEAHERTVATDVLFGLLKGVMAERPSDFRLIVMSATLDAAAFLQYFKGARAIYVQGRQFPVQLMYTPQPEDDYLDAALTAVMQIHFDE 249
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A1D6PBU1_MAIZE (Pre-mRNA-splicing factor ATP-dependent RNA helicase n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6PBU1_MAIZE) HSP 1 Score: 176 bits (445), Expect = 1.380e-50 Identity = 84/145 (57.93%), Postives = 110/145 (75.86%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIH 436
+VSRRVAEEM +G VGYS+RF+D S +T +KY+TDG+LLREAM+DP L KY VIVLDEAHER+L TDVLFGL++ V K RP L++VVMSATL+ + F +F D+ + VPGR HPV++ Y E + +L+AA+ T +QIH
Sbjct: 13 MSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSDAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIH 157
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A642VE99_9ASCO (RNA helicase n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VE99_9ASCO) HSP 1 Score: 180 bits (457), Expect = 2.060e-50 Identity = 83/148 (56.08%), Postives = 115/148 (77.70%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
+V++RVA+EM +LG VGYS+RF+D+ S +T +KYMTDG+LLREAM+DP+L +YS I+LDEAHER+L TD+L GLI++V + RP L+++VMSATLD + F +F D+ V VPGRTHPV++ Y E Q +L++A+ T LQIH E
Sbjct: 117 MSVAQRVADEMDVDLGQEVGYSIRFEDKTSSKTFLKYMTDGMLLREAMTDPQLDRYSCIILDEAHERTLATDILMGLIKQVAERRPDLKIIVMSATLDAQKFQKYFNDAPLVAVPGRTHPVEIYYTPEYQKDYLESAIRTVLQIHASE 264
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A1D2VBN0_9ASCO (YGL120Cp-like protein (Fragment) n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VBN0_9ASCO) HSP 1 Score: 179 bits (453), Expect = 2.780e-50 Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
+V++RVA+EM +LG VGYS+RF+++ SD+T +KYMTDG+LLREAM D LS+YS I+LDEAHER+L TD+L GLI++V K RP L+++VMSATLD + F +F D+ + VPGRTHPV++ Y E Q +LD+A+ T +QIH E
Sbjct: 1 MSVAKRVADEMDVKLGEEVGYSIRFENKTSDKTILKYMTDGMLLREAMDDHDLSRYSCIILDEAHERTLATDILMGLIKQVAKRRPNLKIIVMSATLDAQKFQSYFSDAPILAVPGRTHPVEIYYTPEFQRDYLDSAIRTVIQIHATE 148
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: U9T7N3_RHIID (Helicase ATP-binding domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9T7N3_RHIID) HSP 1 Score: 169 bits (428), Expect = 3.140e-50 Identity = 80/159 (50.31%), Postives = 115/159 (72.33%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPG-----------LRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
+++ RV++E GT+LG +VGYSVRFDD+ S T IKY+TDG+LLRE +SDP L KYS+++LDEAHER+++TD+LFG+++R Q+ R L++++MSATLD + F +F ST + +PGR PV + YA E Q +LDAALTT +QIH ++
Sbjct: 37 ISLASRVSQEFGTQLGQKVGYSVRFDDKSSHSTIIKYLTDGMLLRELLSDPLLLKYSIVILDEAHERTMRTDILFGMVKRAQEIRKNKSNQEDKNYEPLKIIIMSATLDAEKFARYFNTSTILKIPGRQFPVTINYASEPQSDYLDAALTTTMQIHMDQ 195
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A6D2HYX1_9BRAS (RNA helicase n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HYX1_9BRAS) HSP 1 Score: 179 bits (453), Expect = 3.480e-50 Identity = 86/145 (59.31%), Postives = 110/145 (75.86%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIH 436
+VSRRV+EEM ELG VGY+VRFDD S RT +KY+TDG+LLREAM DP LS+Y IVLDEAHER+L TD+LFGL++RV RP L++VVMSATL+T F +F S + VPGR HPV+++Y E + +L+AA+ T +QIH
Sbjct: 89 MSVSRRVSEEMDVELGEEVGYTVRFDDCTSPRTVLKYLTDGMLLREAMVDPLLSRYKAIVLDEAHERTLATDLLFGLVKRVLSNRPDLKLVVMSATLETDKFHKYFSGSPLIKVPGRLHPVEILYTLEPEMDYLEAAINTVIQIH 233
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A1Y3NGH3_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NGH3_PIRSE) HSP 1 Score: 177 bits (450), Expect = 4.160e-50 Identity = 83/148 (56.08%), Postives = 115/148 (77.70%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
+V++RV+EE+ +LG VGYS+RF+D SD+T +KYMTDG+LLREAM+DP L++YS I+LDEAHER+L TD+L GLI+ V K+RP L+++VMSATLD + F +F D+ + VPGRT+PV++ Y E + +L+AAL T LQIH E
Sbjct: 36 MSVAKRVSEELDVKLGEEVGYSIRFEDCTSDKTFLKYMTDGMLLREAMTDPLLTRYSAIILDEAHERTLSTDILMGLIKEVAKKRPELKIIVMSATLDAEKFQKYFDDAPLLTVPGRTYPVEIYYTSEPERDYLEAALRTALQIHTYE 183
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Match: A0A512UI32_9ASCO (RNA helicase n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UI32_9ASCO) HSP 1 Score: 176 bits (447), Expect = 6.120e-50 Identity = 82/148 (55.41%), Postives = 112/148 (75.68%), Query Frame = 2
Query: 2 FTVSRRVAEEMGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVLDEAHERSLQTDVLFGLIRRVQKERPGLRVVVMSATLDTKLFLDFFQDSTSVHVPGRTHPVDVMYAFESQDAFLDAALTTCLQIHGEE 445
+V++RVA+EM ELG VGYS+RF+++ S +T +KYMTDG+LLREAM D LS+YS I+LDEAHER+L TD+L GL+++V RP L++++MSATLD + F +F D+ + VPGRTHPV++ Y E Q +LDAA+ T LQIH E
Sbjct: 154 MSVAKRVADEMDVELGEEVGYSIRFENKTSAKTILKYMTDGMLLREAMEDHNLSRYSCIILDEAHERTLSTDILMGLLKQVTLRRPDLKIIIMSATLDAEKFQSYFNDAPLLAVPGRTHPVEIYYTPEYQKDYLDAAIRTVLQIHATE 301 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig83.19963.1 >prot_S-ischiensis_contig83.19963.1 ID=prot_S-ischiensis_contig83.19963.1|Name=mRNA_S-ischiensis_contig83.19963.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp MGTELGGRVGYSVRFDDRCSDRTAIKYMTDGVLLREAMSDPRLSKYSVIVback to top mRNA from alignment at S-ischiensis_contig83:148729..150870- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig83.19963.1 ID=mRNA_S-ischiensis_contig83.19963.1|Name=mRNA_S-ischiensis_contig83.19963.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2142bp|location=Sequence derived from alignment at S-ischiensis_contig83:148729..150870- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig83:148729..150870- >mRNA_S-ischiensis_contig83.19963.1 ID=mRNA_S-ischiensis_contig83.19963.1|Name=mRNA_S-ischiensis_contig83.19963.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig83:148729..150870- (Schizocladia ischiensis KU_0333)back to top |