mRNA_S-ischiensis_contig83.19962.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19962.1
Unique NamemRNA_S-ischiensis_contig83.19962.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19962.1 vs. uniprot
Match: A0A6H5KJ10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ10_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-5
Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   22 GDVLVFLPGQDDIEALSHLLRERLEAYRAEASR 120
            GDVLVFLPGQDDIEALS LLRE L   RAE SR
Sbjct:  593 GDVLVFLPGQDDIEALSQLLRENLATLRAEKSR 625
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BLAST of mRNA_S-ischiensis_contig83.19962.1 vs. uniprot
Match: D7FZX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX9_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.400e-5
Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   22 GDVLVFLPGQDDIEALSHLLRERLEAYRAEASR 120
            GDVLVFLPGQDDIEALS LLRE L   RAE SR
Sbjct:  575 GDVLVFLPGQDDIEALSQLLRENLATLRAEKSR 607
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ10_9PHAE1.390e-581.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZX9_ECTSI1.400e-581.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:148198..148689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.6933098-CDS-S-ischiensis_contig83:148198..1483191622817323.6933098-CDS-S-ischiensis_contig83:148198..148319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 148199..148319 -
1695741027.015792-CDS-S-ischiensis_contig83:148198..1483191695741027.015792-CDS-S-ischiensis_contig83:148198..148319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 148199..148319 -
1622817323.7043493-CDS-S-ischiensis_contig83:148570..1486891622817323.7043493-CDS-S-ischiensis_contig83:148570..148689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 148571..148689 -
1695741027.02556-CDS-S-ischiensis_contig83:148570..1486891695741027.02556-CDS-S-ischiensis_contig83:148570..148689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 148571..148689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19962.1prot_S-ischiensis_contig83.19962.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 148199..148689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19962.1

>prot_S-ischiensis_contig83.19962.1 ID=prot_S-ischiensis_contig83.19962.1|Name=mRNA_S-ischiensis_contig83.19962.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
NGGGRDGGDVLVFLPGQDDIEALSHLLRERLEAYRAEASRMAAHLRAEAQ
SQASSGYDSDGAPPSDQGNGKGQQPWWQNG
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mRNA from alignment at S-ischiensis_contig83:148198..148689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19962.1 ID=mRNA_S-ischiensis_contig83.19962.1|Name=mRNA_S-ischiensis_contig83.19962.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig83:148198..148689- (Schizocladia ischiensis KU_0333)
AACGGCGGCGGCAGGGATGGCGGTGATGTCCTGGTGTTCCTTCCGGGGCA
GGATGACATCGAGGCCCTCTCGCATCTTCTCCGGGAGCGGCTGGAGGCCT
ACAGGGCCGAGGCCTCCAGGTGCGCCCCTCCTGTCTCCTCCTCCTCCTCC
TCCTCCTCCCCCCTTCCCCCCTCCCCGTCCCCCTCCTTCTGCTCGCCCTC
CTTCTGCCTCCCTCCCCCTCCCCCTCCTCCCCCGCCCCCCCTAAACCCGC
GGGTTCAACGGTTTGTGCAGCACCTTCTCAGTCCGTCCAGGTACTGTAGC
CGTCTGCTACTCCCCCTTCGGCCCACGCCTGCGCATGCACTCACATGGTT
ACCCCCCCGGTACATGGTAGGATGGCGGCGCATTTGCGGGCAGAAGCCCA
GTCTCAGGCTTCCTCAGGCTATGACTCGGATGGCGCCCCCCCCTCCGACC
AAGGGAATGGGAAGGGGCAGCAGCCGTGGTGGCAGAACGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:148198..148689-

>mRNA_S-ischiensis_contig83.19962.1 ID=mRNA_S-ischiensis_contig83.19962.1|Name=mRNA_S-ischiensis_contig83.19962.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig83:148198..148689- (Schizocladia ischiensis KU_0333)
AACGGCGGCGGCAGGGATGGCGGTGATGTCCTGGTGTTCCTTCCGGGGCA
GGATGACATCGAGGCCCTCTCGCATCTTCTCCGGGAGCGGCTGGAGGCCT
ACAGGGCCGAGGCCTCCAGAACGGCGGCGGCAGGGATGGCGGTGATGTCC
TGGTGTTCCTTCCGGGGCAGGATGACATCGAGGCCCTCTCGCATCTTCTC
CGGGAGCGGCTGGAGGCCTACAGGGCCGAGGCCTCCAGGATGGCGGCGCA
TTTGCGGGCAGAAGCCCAGTCTCAGGCTTCCTCAGGCTATGACTCGGATG
GCGCCCCCCCCTCCGACCAAGGGAATGGGAAGGGGCAGCAGCCGTGGTGG
CAGAACGGGGATGGCGGCGCATTTGCGGGCAGAAGCCCAGTCTCAGGCTT
CCTCAGGCTATGACTCGGATGGCGCCCCCCCCTCCGACCAAGGGAATGGG
AAGGGGCAGCAGCCGTGGTGGCAGAACGGG
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