mRNA_S-ischiensis_contig83.19949.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19949.1
Unique NamemRNA_S-ischiensis_contig83.19949.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:90843..92945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size697
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19949.1prot_S-ischiensis_contig83.19949.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 90843..92793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.619299-CDS-S-ischiensis_contig83:90842..908971622817326.619299-CDS-S-ischiensis_contig83:90842..90897Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 90843..90897 -
1695741028.722357-CDS-S-ischiensis_contig83:90842..908971695741028.722357-CDS-S-ischiensis_contig83:90842..90897Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 90843..90897 -
1622817326.630421-CDS-S-ischiensis_contig83:91212..913381622817326.630421-CDS-S-ischiensis_contig83:91212..91338Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 91213..91338 -
1695741028.7322319-CDS-S-ischiensis_contig83:91212..913381695741028.7322319-CDS-S-ischiensis_contig83:91212..91338Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 91213..91338 -
1622817326.6404195-CDS-S-ischiensis_contig83:91475..915811622817326.6404195-CDS-S-ischiensis_contig83:91475..91581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 91476..91581 -
1695741028.7434008-CDS-S-ischiensis_contig83:91475..915811695741028.7434008-CDS-S-ischiensis_contig83:91475..91581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 91476..91581 -
1622817326.6510105-CDS-S-ischiensis_contig83:92537..927931622817326.6510105-CDS-S-ischiensis_contig83:92537..92793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 92538..92793 -
1695741028.753279-CDS-S-ischiensis_contig83:92537..927931695741028.753279-CDS-S-ischiensis_contig83:92537..92793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 92538..92793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.664612-UTR-S-ischiensis_contig83:92793..929451622817326.664612-UTR-S-ischiensis_contig83:92793..92945Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 92794..92945 -
1695741028.7664523-UTR-S-ischiensis_contig83:92793..929451695741028.7664523-UTR-S-ischiensis_contig83:92793..92945Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 92794..92945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19949.1

>prot_S-ischiensis_contig83.19949.1 ID=prot_S-ischiensis_contig83.19949.1|Name=mRNA_S-ischiensis_contig83.19949.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
MARLDNDGGAWKSREGIGRDRTEHRDADFPFTRHPDGPGSGACPYLVDDS
SHDHSPMGGRDGDTGPRELWMADMTPWRTGNKFTAAIHLLGMGFCCKAVV
TLPGHGAAPLRDEPFEAIARRFDFSGAPDVSPLYANLSTTDSLCYDPPRQ
GLDGTSLYNLKLRPMRRHGRLAHCMSKVRSR
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mRNA from alignment at S-ischiensis_contig83:90843..92945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19949.1 ID=mRNA_S-ischiensis_contig83.19949.1|Name=mRNA_S-ischiensis_contig83.19949.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2103bp|location=Sequence derived from alignment at S-ischiensis_contig83:90843..92945- (Schizocladia ischiensis KU_0333)
CCCGGCAACTCTGCGAGGGGGCCTCGTTGGGCCATGGGCGCTGTCGGGGC
CTCTGAGCCCCATGGAGGCTGTGCCCATGTTCAACGCATCCCTGGTGCTG
CGCATAATAATAAGTTGCAGGGAAGGGTAGCGCAGAACCAGTTCTGCCTA
CAATGGCGAGACTTGACAACGATGGAGGGGCGTGGAAGAGCCGTGAAGGG
ATTGGTCGAGACAGGACGGAGCACCGGGATGCGGACTTTCCGTTCACAAG
GCATCCCGACGGCCCGGGCTCCGGTGCTTGTCCGTATCTCGTGGACGACA
GTAGCCATGACCACAGTCCCATGGGCGGTCGTGATGGGGACACGGGGCCG
CGGGAGCTGTGGATGGCAGATATGACTCCATGGCGAACGGGCAACAAGTT
CACTGCAGGTGGGGTCACGGATAGCTGTAGCGGAAGGCGAGGCCAGAATA
TAAGTCTCGGGATGGCATGGTGGTCCTTCAACTTCCCCTGCACGACATAG
AGCTATGATGCATGCTATCTAAATGCCAGGTGGCTTCTCAGAGGGCGTGC
ACTTGCTTTAGGAGACAGGTTCAGTTCGAGCCAGGACAACGCATCTGACC
GACATACGGTTGTTTTGAGCGTGTTATCACGGGCACCAACCACACTGTCA
GGCTGCACGGCAGGTTGCATTGCTACTCGTACAGGCCTTTTTCCCAGCCA
AGAGTCAACCCATGTTCCAGTCGTTCGCTCAGAAGACCCGTCACCGGGAG
AGTTTCCATAGTACGTAGATTTGAATATGTGTGTGGGGGGGGTGCTTTGT
CTCGGTCAAGGCGTGGGGTCAATGATCTCGGGACTACCTTACGGCAAGCA
CAACGGGAGTACATGTACTTCGAAGTCTAATTATGTGTGTGTGCGTGCCC
CCTTGTTACCCGAAAACTTGATGGGTGATTACGGACCATACTCATTGGGT
AAGTACAGTAGTGCCTCACTCAGCGTAACAGGTTAAGAGCTACGTATGGG
GTCCCATTGCAGTGTTCCTGGGAGTGCAGCAGAGTTTCTTTCAACAAGTT
ACTTCAAAGAGGTACTCAGTGCTCTTGCCGATGCTGGTGCATCATCAGAG
ACACACCGCACACTCATCAACGAGCACCCCAACCCATGGTGGCCACTGCC
TGCGCTGCAAACAGGCGTGGCGGCCTGCACTCCAGCACGTGCATATCCCC
AACCTCACCGCTCCCTCAACCTGCCCCCCCCTTCTCCTGCCTCCCCCCCC
CACCCCACCCCCGGTTGTACCTCTCTCTTCTCCTCTCGTCTCTCCCTGCC
TCCCTGCCTCCCTTCCCCCCTCGCTCCGTTTCCCCCCGGACCAAAAACAC
GCCTGGCTTCCCAGCCATCCACCTCCTGGGCATGGGGTTCTGCTGCAAGG
CCGTGGTGACGCTGCCCGGGCACGGAGCGGCACCGCTGAGGGACGAGCCC
TTCGAGGCCATCGCGAGGAGGTGTGATTCATAACACATGTCTCCCGATGC
CAACGCTTGTGTTGCTCCGTCCCGCACACTTGCCCTGGCTTTTGAGGAAT
ACAAGGCAAAAATTCCACCAATTAATGAATTCTTTCATGTTTTGCTCTGT
CCCACAGGTTTGACTTCTCGGGCGCCCCAGACGTGTCTCCCCTGTATGCC
AACCTTTCCACCACGGACAGCCTCTGCTACGACCCCCCCCGGCAGGGCTT
GGACGGGACGAGCCTCTACAACCTCAAACTCAGGTGATGTGGTGTGATGT
GATGCGATGTCGGCTTGTGCTCGCTGTGATGTGATGCGATGCTGTGTGTT
GGGACGTGGACAAGCCTCTACAACCTCAAACTCAGGTGGTGTGGCGTGAT
GTGATGTGATGTCGGCTTTGTGCTCGCTGCGATGTGATGCGACGTCATGC
GACGCGGTGTGTCGGGACGTGACTACATTAGTGCAGTAAGCGCCTTAGGC
GCTTGGGTGACGTGTCGCATTGTGTTGATCCGACTGGCCGTCTAGCGCTC
CGCTGATGTCTGTCTGCCCCTCCCTTTGTGTTTCTCGTGCGTCGGCAGGC
CTATGCGCCGCCATGGGAGGCTGGCCCACTGCATGTCCAAGGTGAGATCC
CGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:90843..92945-

>mRNA_S-ischiensis_contig83.19949.1 ID=mRNA_S-ischiensis_contig83.19949.1|Name=mRNA_S-ischiensis_contig83.19949.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig83:90843..92945- (Schizocladia ischiensis KU_0333)
ATGGCGAGACTTGACAACGATGGAGGGGCGTGGAAGAGCCGTGAAGGGAT
TGGTCGAGACAGGACGGAGCACCGGGATGCGGACTTTCCGTTCACAAGGC
ATCCCGACGGCCCGGGCTCCGGTGCTTGTCCGTATCTCGTGGACGACAGT
AGCCATGACCACAGTCCCATGGGCGGTCGTGATGGGGACACGGGGCCGCG
GGAGCTGTGGATGGCAGATATGACTCCATGGCGAACGGGCAACAAGTTCA
CTGCAGATGGCGAGACTTGACAACGATGGAGGGGCGTGGAAGAGCCGTGA
AGGGATTGGTCGAGACAGGACGGAGCACCGGGATGCGGACTTTCCGTTCA
CAAGGCATCCCGACGGCCCGGGCTCCGGTGCTTGTCCGTATCTCGTGGAC
GACAGTAGCCATGACCACAGTCCCATGGGCGGTCGTGATGGGGACACGGG
GCCGCGGGAGCTGTGGATGGCAGATATGACTCCATGGCGAACGGGCAACA
AGTTCACTGCAGCCATCCACCTCCTGGGCATGGGGTTCTGCTGCAAGGCC
GTGGTGACGCTGCCCGGGCACGGAGCGGCACCGCTGAGGGACGAGCCCTT
CGAGGCCATCGCGAGGAGCCATCCACCTCCTGGGCATGGGGTTCTGCTGC
AAGGCCGTGGTGACGCTGCCCGGGCACGGAGCGGCACCGCTGAGGGACGA
GCCCTTCGAGGCCATCGCGAGGAGGTTTGACTTCTCGGGCGCCCCAGACG
TGTCTCCCCTGTATGCCAACCTTTCCACCACGGACAGCCTCTGCTACGAC
CCCCCCCGGCAGGGCTTGGACGGGACGAGCCTCTACAACCTCAAACTCAG
GTTTGACTTCTCGGGCGCCCCAGACGTGTCTCCCCTGTATGCCAACCTTT
CCACCACGGACAGCCTCTGCTACGACCCCCCCCGGCAGGGCTTGGACGGG
ACGAGCCTCTACAACCTCAAACTCAGGCCTATGCGCCGCCATGGGAGGCT
GGCCCACTGCATGTCCAAGGTGAGATCCCGGGCCTATGCGCCGCCATGGG
AGGCTGGCCCACTGCATGTCCAAGGTGAGATCCCGG
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