mRNA_S-ischiensis_contig83.19947.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19947.1
Unique NamemRNA_S-ischiensis_contig83.19947.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:84890..85361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19947.1prot_S-ischiensis_contig83.19947.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 84892..85194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.080014-UTR-S-ischiensis_contig83:84889..848911622817325.080014-UTR-S-ischiensis_contig83:84889..84891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 84890..84891 +
1695741027.8366377-UTR-S-ischiensis_contig83:84889..848911695741027.8366377-UTR-S-ischiensis_contig83:84889..84891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 84890..84891 +
1622817325.1059146-UTR-S-ischiensis_contig83:85194..853611622817325.1059146-UTR-S-ischiensis_contig83:85194..85361Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 85195..85361 +
1695741027.8583093-UTR-S-ischiensis_contig83:85194..853611695741027.8583093-UTR-S-ischiensis_contig83:85194..85361Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 85195..85361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.0913622-CDS-S-ischiensis_contig83:84891..851941622817325.0913622-CDS-S-ischiensis_contig83:84891..85194Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 84892..85194 +
1695741027.8463597-CDS-S-ischiensis_contig83:84891..851941695741027.8463597-CDS-S-ischiensis_contig83:84891..85194Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 84892..85194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19947.1

>prot_S-ischiensis_contig83.19947.1 ID=prot_S-ischiensis_contig83.19947.1|Name=mRNA_S-ischiensis_contig83.19947.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
MFFELSDLRACSIQWRPCRTAVGMGARVSLERENLHCCCLGGARFCAGVG
EGELYEGAYRARVTAPRGLHSVRYDRLWILPLLLGCPSGVTEIFRRVGGV
*
back to top

mRNA from alignment at S-ischiensis_contig83:84890..85361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19947.1 ID=mRNA_S-ischiensis_contig83.19947.1|Name=mRNA_S-ischiensis_contig83.19947.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=472bp|location=Sequence derived from alignment at S-ischiensis_contig83:84890..85361+ (Schizocladia ischiensis KU_0333)
GGATGTTCTTTGAATTGTCGGACTTGCGAGCTTGCAGCATTCAGTGGCGA
CCCTGTCGTACGGCAGTGGGCATGGGTGCAAGGGTGTCCCTGGAGCGCGA
GAACTTGCATTGCTGCTGCCTTGGCGGGGCACGTTTCTGTGCTGGAGTGG
GCGAGGGCGAACTGTATGAGGGTGCGTATCGTGCGAGGGTCACGGCGCCC
AGAGGACTGCACTCAGTCCGATATGATAGGCTGTGGATATTGCCTCTGCT
ACTCGGTTGCCCAAGCGGAGTGACAGAAATTTTTCGGAGGGTAGGAGGCG
TGTAGTGTCTTCAGGGGCCCGGGGTCCACCCGGCGGGCGACATGATGCAC
AGCAGTGTCCGAGTATCGTAGGAAATGTGGAATTATACTTGATCAGAAGG
TAATCTTCACATCGATACTGTACGGCTCTTGAGTGGCAGATACGCGGCGA
GTTCCAGGCCCCATGCCCAAAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig83:84890..85361+

>mRNA_S-ischiensis_contig83.19947.1 ID=mRNA_S-ischiensis_contig83.19947.1|Name=mRNA_S-ischiensis_contig83.19947.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig83:84890..85361+ (Schizocladia ischiensis KU_0333)
ATGTTCTTTGAATTGTCGGACTTGCGAGCTTGCAGCATTCAGTGGCGACC
CTGTCGTACGGCAGTGGGCATGGGTGCAAGGGTGTCCCTGGAGCGCGAGA
ACTTGCATTGCTGCTGCCTTGGCGGGGCACGTTTCTGTGCTGGAGTGGGC
GAGGGCGAACTGTATGAGGGTGCGTATCGTGCGAGGGTCACGGCGCCCAG
AGGACTGCACTCAGTCCGATATGATAGGCTGTGGATATTGCCTCTGCTAC
TCGGTTGCCCAAGCGGAGTGACAGAAATTTTTCGGAGGGTAGGAGGCGTG
TAGATGTTCTTTGAATTGTCGGACTTGCGAGCTTGCAGCATTCAGTGGCG
ACCCTGTCGTACGGCAGTGGGCATGGGTGCAAGGGTGTCCCTGGAGCGCG
AGAACTTGCATTGCTGCTGCCTTGGCGGGGCACGTTTCTGTGCTGGAGTG
GGCGAGGGCGAACTGTATGAGGGTGCGTATCGTGCGAGGGTCACGGCGCC
CAGAGGACTGCACTCAGTCCGATATGATAGGCTGTGGATATTGCCTCTGC
TACTCGGTTGCCCAAGCGGAGTGACAGAAATTTTTCGGAGGGTAGGAGGC
GTGTAG
back to top