mRNA_S-ischiensis_contig83.19942.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19942.1
Unique NamemRNA_S-ischiensis_contig83.19942.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:9025..11097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size783
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.372284-CDS-S-ischiensis_contig83:9026..96711622817323.372284-CDS-S-ischiensis_contig83:9026..9671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 9027..9671 -
1695741026.794395-CDS-S-ischiensis_contig83:9026..96711695741026.794395-CDS-S-ischiensis_contig83:9026..9671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 9027..9671 -
1622817323.3839326-CDS-S-ischiensis_contig83:10962..110971622817323.3839326-CDS-S-ischiensis_contig83:10962..11097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 10963..11097 -
1695741026.8058095-CDS-S-ischiensis_contig83:10962..110971695741026.8058095-CDS-S-ischiensis_contig83:10962..11097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 10963..11097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19942.1prot_S-ischiensis_contig83.19942.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 9027..11097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19942.1

>prot_S-ischiensis_contig83.19942.1 ID=prot_S-ischiensis_contig83.19942.1|Name=mRNA_S-ischiensis_contig83.19942.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=260bp
VPFRVSIFHRVLLGFPPTSWLQHMAELALSILGAILGAFGAVLGTHGSRG
GRDLGGCRGADGPSLPGNAPPSHEGACRAAKLCFRLSGGPGLGLVCVEIP
DTDALLANCPRTLRDVNEAADPFAVAWSRPTRRPPGQDRQLLPTAPERGH
YATARVLTPGTSHIVAHGWWPRSALTCTDVCPPNMTGGGTLAVQSGAPRK
RRLRARICRVRVRCWYCFGPVRRGHSLGVGSRQLGTLWPPHSLRSRYCLP
RWQIGSVCWP
back to top

mRNA from alignment at S-ischiensis_contig83:9025..11097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19942.1 ID=mRNA_S-ischiensis_contig83.19942.1|Name=mRNA_S-ischiensis_contig83.19942.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2073bp|location=Sequence derived from alignment at S-ischiensis_contig83:9025..11097- (Schizocladia ischiensis KU_0333)
GTTCCATTCCGTGTCTCAATTTTCCACCGGGTGCTACTCGGTTTCCCACC
AACGTCGTGGCTGCAGCATATGGCTGAACTTGCGTTGAGCATACTCGGTG
CGATTTTGGGGGCATTCGGTGCGGTGCTCGGGACGGCTTCCTTTGTTCAC
ACACGTAAACAGGACGCTGTCAATCGCTACGTGGGAATCGTGCAGAGATA
TACAAACGTGCAGGAGGACATAGCCCTGCTTTTGGCTGTAAAAGGACGAG
TTGAGGTGAGTCCGGACGCTTTCACGGGCCCTGGGCCCTGAAAACACACC
GCTCTCCCCTCTGCGTCACGTCATGCGAGCACGCCCCCCCCCCCTGTTCT
TGGCCGGTTTTACCGCATCCGCCCAGGCACAGCAAGCCGCCGCCGCTCGC
CCGGAGCCTTGGTACATTGCGGTGTACCGAGATATGGCGGTCACGACAGC
CGAAGTGGAACCAGCGAGGCAGCGGCTGAACGCGTTTTGGGACGAGGCCA
CAACTTTGCATGAGGAGGGCATGGTGCCGGACGACAAGTTGTTTGGTGGT
GGCGACAAGTGGTTTTACCGCGCCCGCCGTTACCTTTCGGTCTGCCTGCC
GCTCGATCTTGCAAATCTTCGTCGCCTCGGACTCCCAGGGCCTGCAGGCC
CAGGTCGCCGCTACCGCCTAATCACCGAACTGCGCGACGAGCGTTTCGGC
CCCGATGACGAGGAGAATAGGCGAGTCCGCGAAGAGGTTAGCCAAGCGGA
TCTTGACGCGCAGCAAGCTTGGGGGCCCGTGCACCAGGTCGCCGCTACCG
CCTAATCACCCAACTGTGCCACGAGCGTTTCGGCCCCAATGACGAGGAGA
ATAGGCGAGTCCGCGAAGAGGTTTGAGCAGGCGGATCATCAGGCGATGCA
AGCTTGGAGGCCCGCGAAGCTGTGAGAAGTGCGTAGCCCTCGAATTCACA
CCCGTTCGGCAAGGTCTCCGCGCCGGTTATCGCGGTGAGGCGGGGCCGCG
AAGGGAGCGCCTCGACCACACGTAAGCGTGAGAGATGAAGATAATACTAC
GTGCATTCAATCCTCGCGCACCGTCACTTCCCTCTCGCACGTTTCCCGCG
CCCTCGGGGTGGACGCGACGCCGTCGCCGGCCGAAGCCCTCCGAAAGGCC
GTTGAGATGCACAGGACTTGAGCGGGCGGCGAGAGAGCACTCGTGGCGTC
GCAGGGCTTGCTGCGGGGCAGGCGAGCCACCGCTGCAGACGCCGGGAACC
GGGTCGACGGGACAACGCGGAAGTACCGGGTCGTGACTTCATGGGCCACG
TATGACGATGTTGACTGAGCACGTACGTACAGGACCCAGAAGGGCAGGGC
CACATGGCTCAGTTCCATTCCATCTCTCAATTTTCCACCGGGTGCTACTC
GGTTTCCCACGAACGTCGTGCTGCAGCATGGCTCCCGGGGTGGTCGTGAT
CTCGGTGGTTGTCGGGGCGCTGACGGCCCATCACTACCAGGCAATGCACC
TCCCAGCCATGAGGGTGCGTGTCGTGCTGCCAAACTTTGTTTTCGTCTCT
CGGGCGGCCCCGGCCTTGGCCTCGTGTGTGTAGAGATTCCTGACACCGAC
GCGCTCCTGGCGAACTGTCCGCGCACGCTCCGGGACGTCAACGAGGCCGC
GGACCCTTTCGCGGTGGCCTGGTCAAGGCCGACGCGCCGTCCACCTGGTC
AAGACCGGCAGCTTCTTCCCACGGCCCCGGAGCGTGGGCACTACGCGACA
GCGCGCGTGTTAACTCCCGGTACTTCACACATTGTGGCGCACGGCTGGTG
GCCGCGGAGCGCTCTGACTTGCACCGACGTCTGCCCGCCCAATATGACAG
GCGGCGGTACCCTGGCTGTCCAATCTGGAGCACCCCGTAAGCGTCGTTTG
CGTGCCCGCATTTGTCGTGTGCGTGTTCGCTGCTGGTATTGTTTTGGCCC
TGTTCGACGTGGACACAGTCTGGGTGTTGGTTCAAGACAGCTTGGGACTT
TGTGGCCTCCGCACAGCCTGCGCTCCAGGTACTGCTTACCGCGCTGGCAG
ATTGGGAGCGTATGTTGGCCCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig83:9025..11097-

>mRNA_S-ischiensis_contig83.19942.1 ID=mRNA_S-ischiensis_contig83.19942.1|Name=mRNA_S-ischiensis_contig83.19942.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1560bp|location=Sequence derived from alignment at S-ischiensis_contig83:9025..11097- (Schizocladia ischiensis KU_0333)
GTTCCATTCCGTGTCTCAATTTTCCACCGGGTGCTACTCGGTTTCCCACC
AACGTCGTGGCTGCAGCATATGGCTGAACTTGCGTTGAGCATACTCGGTG
CGATTTTGGGGGCATTCGGTGCGGTGCTCGGGACGGTTCCATTCCGTGTC
TCAATTTTCCACCGGGTGCTACTCGGTTTCCCACCAACGTCGTGGCTGCA
GCATATGGCTGAACTTGCGTTGAGCATACTCGGTGCGATTTTGGGGGCAT
TCGGTGCGGTGCTCGGGACGCATGGCTCCCGGGGTGGTCGTGATCTCGGT
GGTTGTCGGGGCGCTGACGGCCCATCACTACCAGGCAATGCACCTCCCAG
CCATGAGGGTGCGTGTCGTGCTGCCAAACTTTGTTTTCGTCTCTCGGGCG
GCCCCGGCCTTGGCCTCGTGTGTGTAGAGATTCCTGACACCGACGCGCTC
CTGGCGAACTGTCCGCGCACGCTCCGGGACGTCAACGAGGCCGCGGACCC
TTTCGCGGTGGCCTGGTCAAGGCCGACGCGCCGTCCACCTGGTCAAGACC
GGCAGCTTCTTCCCACGGCCCCGGAGCGTGGGCACTACGCGACAGCGCGC
GTGTTAACTCCCGGTACTTCACACATTGTGGCGCACGGCTGGTGGCCGCG
GAGCGCTCTGACTTGCACCGACGTCTGCCCGCCCAATATGACAGGCGGCG
GTACCCTGGCTGTCCAATCTGGAGCACCCCGTAAGCGTCGTTTGCGTGCC
CGCATTTGTCGTGTGCGTGTTCGCTGCTGGTATTGTTTTGGCCCTGTTCG
ACGTGGACACAGTCTGGGTGTTGGTTCAAGACAGCTTGGGACTTTGTGGC
CTCCGCACAGCCTGCGCTCCAGGTACTGCTTACCGCGCTGGCAGATTGGG
AGCGTATGTTGGCCCCATGGCTCCCGGGGTGGTCGTGATCTCGGTGGTTG
TCGGGGCGCTGACGGCCCATCACTACCAGGCAATGCACCTCCCAGCCATG
AGGGTGCGTGTCGTGCTGCCAAACTTTGTTTTCGTCTCTCGGGCGGCCCC
GGCCTTGGCCTCGTGTGTGTAGAGATTCCTGACACCGACGCGCTCCTGGC
GAACTGTCCGCGCACGCTCCGGGACGTCAACGAGGCCGCGGACCCTTTCG
CGGTGGCCTGGTCAAGGCCGACGCGCCGTCCACCTGGTCAAGACCGGCAG
CTTCTTCCCACGGCCCCGGAGCGTGGGCACTACGCGACAGCGCGCGTGTT
AACTCCCGGTACTTCACACATTGTGGCGCACGGCTGGTGGCCGCGGAGCG
CTCTGACTTGCACCGACGTCTGCCCGCCCAATATGACAGGCGGCGGTACC
CTGGCTGTCCAATCTGGAGCACCCCGTAAGCGTCGTTTGCGTGCCCGCAT
TTGTCGTGTGCGTGTTCGCTGCTGGTATTGTTTTGGCCCTGTTCGACGTG
GACACAGTCTGGGTGTTGGTTCAAGACAGCTTGGGACTTTGTGGCCTCCG
CACAGCCTGCGCTCCAGGTACTGCTTACCGCGCTGGCAGATTGGGAGCGT
ATGTTGGCCC
back to top