mRNA_S-ischiensis_contig82.19938.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19938.1
Unique NamemRNA_S-ischiensis_contig82.19938.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:626947..631802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size507
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19938.1prot_S-ischiensis_contig82.19938.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 626949..631802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.2223833-CDS-S-ischiensis_contig82:626948..6272311622817323.2223833-CDS-S-ischiensis_contig82:626948..627231Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 626949..627231 -
1695741026.6885817-CDS-S-ischiensis_contig82:626948..6272311695741026.6885817-CDS-S-ischiensis_contig82:626948..627231Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 626949..627231 -
1622817323.2333467-CDS-S-ischiensis_contig82:627838..6279181622817323.2333467-CDS-S-ischiensis_contig82:627838..627918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 627839..627918 -
1695741026.700775-CDS-S-ischiensis_contig82:627838..6279181695741026.700775-CDS-S-ischiensis_contig82:627838..627918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 627839..627918 -
1622817323.246087-CDS-S-ischiensis_contig82:631661..6318021622817323.246087-CDS-S-ischiensis_contig82:631661..631802Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 631662..631802 -
1695741026.7124636-CDS-S-ischiensis_contig82:631661..6318021695741026.7124636-CDS-S-ischiensis_contig82:631661..631802Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 631662..631802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19938.1

>prot_S-ischiensis_contig82.19938.1 ID=prot_S-ischiensis_contig82.19938.1|Name=mRNA_S-ischiensis_contig82.19938.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
RAGGPGVADIVTVFEPQVPWPQGGVRRPGPAGFVLVISSAITRPNHTARR
ELVCTFDGRPARAVWLSWSMVLCSTVGLAAGAVTTLHLSFQGRRISGDHA
FRHLPNPPHSRLALPTGEPSPDSLLLHRRRHYQKNSSPGGGDATIGGGRS
ESGRSGEGEQAASPESVH
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mRNA from alignment at S-ischiensis_contig82:626947..631802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19938.1 ID=mRNA_S-ischiensis_contig82.19938.1|Name=mRNA_S-ischiensis_contig82.19938.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4856bp|location=Sequence derived from alignment at S-ischiensis_contig82:626947..631802- (Schizocladia ischiensis KU_0333)
CGTGCTGGTGGGCCGGGGGTGGCAGACATTGTGACAGTGTTTGAGCCGCA
GGTGCCATGGCCACAAGGGGGGGTGCGGAGGCCGGGGCCGGCGGGGTTCG
TACTGGTGATCAGCAGTGCCATCACTCGTCCCAACCACACGGTGTGTCAC
TACCTGCCTGCGTATTATACCTTTTGCATGGGAGGGGCAGACGCCGTGGA
GCGGAGTGCAACTCCTTTCGTATGGGGGTCGCGCGGAAAACGTGAAGTTT
TTTTACCTGCAGGGTGCATTTCGGCTCGGATGTCTGTCCGTGGTAACGCT
TTGTGGCGGCCTCGACACCGAGAACTCGCGCTGTGGTGCACCGTTCACGA
TACGCCTGGCGCCAAAAGAAAGATAGAAATTAGCGGTATGTTCCACAATT
TGAAACACCGTTAGATTTCAATCTCCCACAAACAAACCCGAAGTTTCGAC
TTGGGGCTGTCGGCATTGCACGCACGGTTATGTCGCAAGACAAACCAATG
AGCACATATCTCCCACACGTGCGATTGTGCCTCGTTACGAAGTACAATGT
ATATGAATCACCATCGTTTACATCTCACTTTAGCGCGAGCAATGTCGCCT
GAGGTGGCCGTTTGCGTGTCGGGATTTGCACCGCAATAGAGCCGGTACCA
GTATTTTGACAGCCCACAAGCTGGTTCAGCCAAAAAGCACCAAAATCTGT
CCGCGGCGATTTCTCAAAAACGGCATCGAGTTGACACAAATTGCACACAG
CGACATGATTGCGTCGTCCCCACAGATTGGTGTGCCCGTTGGCCGTAAAA
GCGCCGTCGGTATCGCTTTCAATGGCAAAAGCCTTTTTCGTCGACCGTTG
ACGGCTATTTTCGGCCAAAATTTAGCGCAAAATTCTCACTCGAATATTGC
GAGTTGGGGGATGCTGCTTTGCGCGATTGTTCTTTGCAGCCAAATAATAA
ACTTGACAACCATATCCGAAAGAACAACAGCAGTATTTCCATCAAAATTG
GCGTTTTATGAATTCAGAATAATTGCAATATTTCACTCAATTTCAATTTT
TGTTCCTGGATTGGGTGTCAAGCTATTCGTTTGGTTGCAAGGAACACACA
TGCAAAACAGCACCTCTCAACTCCAAAAACTCGTGTGAGAAGTTTTTTCG
CCCGCTTGCCCGAACCAGCTTGTACTGCAGGTACGGAGGGGTGCCCCTCC
CATACTTCCAATCTCGTATGTGCCATACAGGTCTACCGTATACCTACTTC
GATGTAGGTCTGACAGATAATGTAGCCCCCACAAGACATGCAGGGGAGAT
CACATTGCATGCGAGCGAGTTTCGAGGCACTGGTTCCACAATCACCCACA
AGAAATTCCGCCTGGTCCTGATGTTGCTCTTTTGTTTATGCAAATCTTCT
CACCATGATCTATTGTGGGAGGATCGCTCTCATGAGAGATTGCCTGGGGG
GCCAAAATCTGTGAACTCTCTCAAATATTGCATGAGGCACGATATCCCCT
CCACCTTACCATCTGCGTTGCTTGTGGCAACAAAGACTGGAGGTACTGTA
CTGCACAGTAGTAGTGGAAATACTGTACACTACAGTAGTCAGTCTGCCCG
GACAGAGGATACAACGCTCTGGGTCGCTCATGCCTCAAGTTAGTGTCTGA
TATGCAGTGTGTGCATGCCCAAGGGCGTGCAGGCCATGTCCAGCAGGTCA
AGACAGAATTGCATCTTGACACGTACCATCCATCTGTCGCTTGAGTATAT
TTGGGGAAAGATGTTACCTCATTAGAAGCATTTGGTTGTATACCAACCCG
TACTATTACTATCCGTTTGGGCTTCCAAATATACTTCAATCCATCTTACA
TGCAGAGTGGTGCTATGGAATAGTCCCACCCTATATAGTTGTCAGCAGCA
AGGTTTTGATCATGTACTCGCACTCGTATGAAATTCTTTCAAGTGCGCGA
CACTATGTCAACCCCTGCTATAGTAGACTCGGAGTGCAACAAGCTGCCCC
CCCGCCCCAAAATTGGACATACAATATACACAAACATTGTACTGTATTGT
ATCGAGTACATGAGTGTGGCCCGACACAAGTACTGCAGTAGAGTGCTTTT
GCTTTTCTTCCCCGCAGTATAATTTCTCAAAATGCAGGTAATGTATCAAG
GCATGCCATATACAGTGAGGCAAGCTAACCCTTGGATGAGTACAGTACAG
CACCGCCCAGTACAATACAAGTACACTGCACCAAGATTGATAGATAGTGT
ACTTGATACTTGCAAGTGTTACAGTACCGGCGTCCTATGATGGCTAGCGG
GTATAGTACATACTGTAGTAGCCAGCAGTGTTTAGACAGGGACAGCCTGA
ACCGCTGCATGCACACAGCGCTTGCCTGCAAGGGCACTTGTCCGAGATGG
TGAATGCCATTTGCCATGTCTGGAAGCTGTCAACGTTCGAACTAACACAT
GCTAGTTTGGGTGTGGCGGAGCCATCCCGCACAGTCTCGAGGTCTAGTTC
GGACTCGCTGAGGTGTTTGTACTTCTGGAGGTTGCCTGAACAGTTACCGG
TCCCATAAATCGGTGCACCGTCGGTAAATTATGCCGCCCAGTATAACGTA
CTCGAATTGACTGTCTTGCCGGCTACAATTTCAAGCTCGATGTATGGATC
CAGATCAACCTGTGGAGCCTTGTAGAGCCCTGCAACCTTGACCTAGCCCC
TCTAAAAGACCATGGCTCGTCGATTGGCGCCTTGGGATCGGCCTGTCTGG
GCCTCCTTGAGAGCTTTTTACAGTAGTGCATTCCCCCATGTTCTGCTGCC
CACCTCCCATATTGCAACAGCGTCAGACGTACACTACTGTAGGTGATACC
ATGAGGACAACACTCGTACGAGTACATATTTTGGTGTGGTTTGGTTGTTA
ATTCCGTCCATATGTCGGTGGCCAGTTTATCTCGGCAAGCGCCCAAGATG
GAGTGGAACGAGACGGGGATTTGAGCCAGAAACATCGCCCCATGTTGATA
GTCACCCATGGCTATGTCGAGGCAAGCTAACGTACGAGTACAACTTGCAA
GTGTTTATCGAAAGATGTATTCTATTCATTGTTCCAAGTATATACGCGGT
ACAACTCGAGGCTGTTTTCCTGTAGTGTACTGTTATGTCCATCAATATAC
TATGTTCTGTAGTACTTCACACATACAGTAGTTGAATCCATACACGAAGT
GCTTCCAAGTAGATAGAGTCATTTTGACATGTTACTGCTCCTTCTCGAAC
GAGGCGCGGGGTCAATGATCTCGGGACTACGGCAAGCACCACGTGAACAC
ATATATACACTTAAAGCCCGCTACGTCTCGGTCACGCTGATGGTCTTGGG
ACTACGGCAAGCACATGCGAGTATGGAGTAAACATATACGTACTGGCAGA
GTAGTTGGTAAGGGTTTCGAAGTACATACAGTGGGTATGTGTGCCGTGTG
CAGTATTTGCTCGACGCTACTATTCCTACGGTAGTATATACTGAATACTC
CGAAGTATTTCAACATAACAATGTCAACCCTGATGTTCGTGAACAGTGCA
CTCTCCCTAGCCTCCATCTGCTGCAGTCTATCGACCCCAGAGTTTGACTA
TTTGGTACGCCGCTCATCTGAGAGGGGATGGGCTCCTCCCTCCCTGGCTT
GGAGGGACGTGGAGGGCTGCTCTGACCTCAGTCAGTTGATGATGCGGTCA
ATGATCTCTGGGCCACAGCAAACAATGTGACCATGTACAGTATGAACAAG
TTACTACCAGTATGCCTGTGCGCCGATTGACTTTGCAGTGTTTGACTGCC
TGCGCGTTGCACGTGCTGGTCGCCTGCCTTGTGTCATGGCCCTCTGTGTG
TCTTGATGGGTGGACTGCCTCTGTCCTGCCACAGGCCCGGAGGGAGCTGG
TGTGCACATTTGATGGACGCCCGGCGCGTGCAGTGTGGCTGTCGTGGAGC
ATGGTCCTCTGCAGGTGCGTGTGGACTACTGTACATTTTCATGGCTGTTT
CGACTCTCTGCTACACCACTACAAAGTATACTGTACTGTAGCTAGGCTGC
AACACCTCCCATAGCTCGGTCAGAGTTGGAATCCCATTGTGGCGTGATGT
GCTTGCATGGGCTTCGAGTTGATACATCACGTCATGCAGGCAAAACGATA
GGGACGGTACTGGCGAGAAAATGTATTTCCGAGAGCCAGAGCGGAGGGTT
TGCGTGGCAAGCGAGTGAGGTATCTATCGTGCTCTGCTTGGCACTCTTTG
CAATGCCTAATCGTGTGTGGAGAATGTACGCTGATTGCTTGAAGAAAAAC
TGTGCATGCTCTCCTCAAGTAATCTTTTGTTTTGGGTGCTAACTATAGAA
CTGTGGGGGTGGAGAATGCAAGGACTGCTTGCGGTAGAAAATCCACGGAA
GAACGGTGCACTGCACCACTGTACTGTAGGTACTCTACTGCAGGTGTTGC
AGAAAACACTCCCTTCACCAACCCCAAGTATTTCAATACTTTGTGCGCTG
TTCCTCCAACTGGCACACTGACTACTGTCAGATACTGCTGTGCTAACAAC
AGTACCTTTGCGGCCCCCCAGCACTGTGGGCCTGGCCGCCGGGGCTGTAA
CTACCCTGCACCTCTCCTTCCAGGGCCGGCGCATCAGTGGAGACCATGCA
TTTCGCCACCTTCCGAACCCCCCGCACTCCCGCCTCGCCCTCCCCACTGG
GGAGCCCTCCCCAGACTCCCTACTCCTACACCGCCGCCGCCATTACCAGA
AAAATTCATCCCCTGGGGGGGGTGACGCCACAATTGGTGGTGGCAGAAGT
GAGAGCGGCAGGAGCGGGGAAGGAGAGCAGGCGGCCAGCCCAGAATCTGT
ACATGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:626947..631802-

>mRNA_S-ischiensis_contig82.19938.1 ID=mRNA_S-ischiensis_contig82.19938.1|Name=mRNA_S-ischiensis_contig82.19938.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig82:626947..631802- (Schizocladia ischiensis KU_0333)
CGTGCTGGTGGGCCGGGGGTGGCAGACATTGTGACAGTGTTTGAGCCGCA
GGTGCCATGGCCACAAGGGGGGGTGCGGAGGCCGGGGCCGGCGGGGTTCG
TACTGGTGATCAGCAGTGCCATCACTCGTCCCAACCACACGCGTGCTGGT
GGGCCGGGGGTGGCAGACATTGTGACAGTGTTTGAGCCGCAGGTGCCATG
GCCACAAGGGGGGGTGCGGAGGCCGGGGCCGGCGGGGTTCGTACTGGTGA
TCAGCAGTGCCATCACTCGTCCCAACCACACGGCCCGGAGGGAGCTGGTG
TGCACATTTGATGGACGCCCGGCGCGTGCAGTGTGGCTGTCGTGGAGCAT
GGTCCTCTGCAGGCCCGGAGGGAGCTGGTGTGCACATTTGATGGACGCCC
GGCGCGTGCAGTGTGGCTGTCGTGGAGCATGGTCCTCTGCAGCACTGTGG
GCCTGGCCGCCGGGGCTGTAACTACCCTGCACCTCTCCTTCCAGGGCCGG
CGCATCAGTGGAGACCATGCATTTCGCCACCTTCCGAACCCCCCGCACTC
CCGCCTCGCCCTCCCCACTGGGGAGCCCTCCCCAGACTCCCTACTCCTAC
ACCGCCGCCGCCATTACCAGAAAAATTCATCCCCTGGGGGGGGTGACGCC
ACAATTGGTGGTGGCAGAAGTGAGAGCGGCAGGAGCGGGGAAGGAGAGCA
GGCGGCCAGCCCAGAATCTGTACATCACTGTGGGCCTGGCCGCCGGGGCT
GTAACTACCCTGCACCTCTCCTTCCAGGGCCGGCGCATCAGTGGAGACCA
TGCATTTCGCCACCTTCCGAACCCCCCGCACTCCCGCCTCGCCCTCCCCA
CTGGGGAGCCCTCCCCAGACTCCCTACTCCTACACCGCCGCCGCCATTAC
CAGAAAAATTCATCCCCTGGGGGGGGTGACGCCACAATTGGTGGTGGCAG
AAGTGAGAGCGGCAGGAGCGGGGAAGGAGAGCAGGCGGCCAGCCCAGAAT
CTGTACAT
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